UHGV-1480761 (vOTU-118536)

Viral Genome: UHGV-1480761

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1480761
vOTU ID	vOTU-118536
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0130737
Associated BioSample	SAMEA3664745
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.8 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9693
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.96
Jumbo phage	No

Genome content
Genome length (bp)	18,269
GC content	53.99%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	16
CDS density	89%
Average CDS length (bps)	1,016.81
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 50.8)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1480761_1	K06400	349.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1480761_1	phrog_95	337.8	0	integrase	integration and excision
UniRef90	UHGV-1480761_1	UniRef90_A0A367GJ42	550.0	0	Zn_ribbon_recom domain-containing protein	N/A
eggNOG-mapper	UHGV-1480761_1	903814.ELI_1010	327.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1480761_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1480761_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1480761_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1480761_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1480761_1	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1480761_2	1280696.ATVY01000034_gene3237	114.0	1.43e-28	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	N/A
UniRef90	UHGV-1480761_3	UniRef90_A0A6L6LZF3	152.0	5.90998e-41	Zn_ribbon_recom domain-containing protein	N/A
eggNOG-mapper	UHGV-1480761_3	665956.HMPREF1032_03817	200.0	0	N/A	N/A
COG	UHGV-1480761_3	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
KOfam	UHGV-1480761_4	K24087	97.9	9.5e-29	rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-]	N/A
eggNOG-mapper	UHGV-1480761_4	500632.CLONEX_03425	355.0	0	N/A	N/A
Pfam	UHGV-1480761_4	PF12784	N/A	N/A	PD-(D/E)XK nuclease family transposase	PDDEXK_2
COG	UHGV-1480761_4	COG5464	N/A	N/A	Recombination-promoting DNA endonuclease RpnC/YadD	N/A
structural_annotation	UHGV-1480761_4	PF12784,TIGR01784,COG5464	N/A	N/A	N/A	N/A
PHROG	UHGV-1480761_5	phrog_37799	62.1	2.7e-18	N/A	unknown function
UniRef90	UHGV-1480761_5	UniRef90_R6NA79	137.0	5.71e-38	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-1480761_5	272563.CD630_06610	126.0	3.79e-34	Bacteriophage holin family	N/A
Pfam	UHGV-1480761_5	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1480761_5	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1480761_5	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
KOfam	UHGV-1480761_6	K07273	139.4	3.09995e-41	acm; lysozyme	N/A
PHROG	UHGV-1480761_6	phrog_291	118.5	6.4e-35	endolysin	lysis
UniRef90	UHGV-1480761_6	UniRef90_D1PR98	191.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-1480761_6	411471.SUBVAR_06927	191.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1480761_6	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1480761_6	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1480761_6	PF01183,MF_02227,NF002576,COG3757	N/A	N/A	N/A	N/A
KOfam	UHGV-1480761_9	K00986	57.4	2.1e-16	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-1480761_9	phrog_1423	114.7	7.6e-34	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1480761_9	UniRef90_A0A357TPP5	414.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-1480761_9	657322.FPR_27160	245.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
COG	UHGV-1480761_9	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-1480761_9	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-1480761_10	phrog_17147	434.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1480761_10	411459.RUMOBE_01720	535.0	0	N/A	N/A
PHROG	UHGV-1480761_11	phrog_19280	66.8	2e-19	N/A	unknown function
eggNOG-mapper	UHGV-1480761_11	1160721.RBI_I01572	92.8	3.87e-20	N/A	N/A
structural_annotation	UHGV-1480761_11	PF10651,NF033814,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-1480761_12	phrog_1067	399.3	0	minor head protein	head and packaging
UniRef90	UHGV-1480761_12	UniRef90_A0A3D5L0J3	496.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1480761_12	1160721.RBI_I01574	393.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1480761_12	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1480761_12	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1480761_12	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1480761_12	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1480761_13	phrog_33	70.7	3e-20	distal tail protein Dit	tail
UniRef90	UHGV-1480761_13	UniRef90_A0A1C5W6B6	166.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1480761_13	536233.CLO_0897	92.4	5.79e-20	tail component	N/A
COG	UHGV-1480761_13	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1480761_13	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1480761_14	phrog_1272	214.2	0	tail length tape measure protein	tail
UniRef90	UHGV-1480761_14	UniRef90_A0A174XH68	382.0	0	Phage tail tape measure protein, TP901 family	N/A
eggNOG-mapper	UHGV-1480761_14	610130.Closa_0752	343.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1480761_14	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1480761_14	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1480761_14	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-1480761_15	1415774.U728_1245	66.2	0.000000000000252	N/A	N/A
PHROG	UHGV-1480761_16	phrog_29863	45.4	0.0000000000014	N/A	unknown function
eggNOG-mapper	UHGV-1480761_16	665956.HMPREF1032_00110	52.4	0.0000000524	N/A	N/A