UHGV-1481090 (vOTU-035763)

Viral Genome: UHGV-1481090

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1481090
vOTU ID	vOTU-035763
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0222002
Associated BioSample	SAMN02334000
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.68 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.981
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.84
Jumbo phage	No

Genome content
Genome length (bp)	31,900
GC content	41.53%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	94%
Average CDS length (bps)	682.57
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 80.68)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1481090_4	K14056	47.5	0.00000000000029	puuR; HTH-type transcriptional regulator, repressor for puuD	N/A
PHROG	UHGV-1481090_4	phrog_8	46.4	0.0000000000008	transcriptional regulator	transcription regulation
UniRef90	UHGV-1481090_4	UniRef90_UPI001899A01A	113.0	9.29e-32	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1481090_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1481090_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1481090_4	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1481090_9	phrog_408	59.3	6.2e-17	N/A	unknown function
PHROG	UHGV-1481090_10	phrog_69	336.2	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1481090_10	UniRef90_A0A412L7W2	674.0	0	N/A	N/A
eggNOG-mapper	UHGV-1481090_10	1151292.QEW_2472	354.0	0	N/A	N/A
Pfam	UHGV-1481090_10	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-1481090_10	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-1481090_10	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-1481090_11	phrog_112	216.7	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1481090_11	UniRef90_A0A412UNI7	296.0	0	N/A	N/A
eggNOG-mapper	UHGV-1481090_11	1123288.SOV_6c00600	238.0	0	N/A	N/A
Pfam	UHGV-1481090_11	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-1481090_11	PF10991,MF_04153	N/A	N/A	N/A	N/A
KOfam	UHGV-1481090_12	K02334	909.2	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-1481090_12	phrog_17	417.7	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1481090_12	UniRef90_A0A412UNJ8	1186.0	0	POLAc domain-containing protein	N/A
eggNOG-mapper	UHGV-1481090_12	1274524.BSONL12_06038	759.0	0	DNA polymerase A domain	N/A
Pfam	UHGV-1481090_12	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-1481090_12	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-1481090_12	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-1481090_13	phrog_256	1073.5	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1481090_13	UniRef90_UPI001D06E26F	833.0	0	virulence-associated E family protein	N/A
eggNOG-mapper	UHGV-1481090_13	536232.CLM_2670	818.0	0	virulence-associated E family protein	N/A
Pfam	UHGV-1481090_13	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-1481090_13	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-1481090_13	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
PHROG	UHGV-1481090_14	phrog_93	74.9	1.2e-21	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1481090_14	UniRef90_A0A412UNG8	145.0	1.24716e-43	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1481090_14	879305.HMPREF9290_0155	95.5	1.49e-24	VRR_NUC	N/A
Pfam	UHGV-1481090_14	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1481090_14	PF08774,MF_00130,NF002584	N/A	N/A	N/A	N/A
KOfam	UHGV-1481090_15	K14440	127.3	3.3e-38	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-1481090_15	phrog_62	418.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1481090_15	UniRef90_A0A412L7W0	854.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-1481090_15	97138.C820_00220	617.0	0	snf2 family	N/A
PADLOC	UHGV-1481090_15	ZorD1_00007	84.1	6.3e-25	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-1481090_15	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1481090_15	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1481090_15	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1481090_15	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-1481090_18	phrog_954	202.3	0	DNA methyltransferase	other
UniRef90	UHGV-1481090_18	UniRef90_A0A2N0ULX9	320.0	0	Methyltransf_11 domain-containing protein	N/A
eggNOG-mapper	UHGV-1481090_18	1284352.AOIG01000022_gene3791	201.0	0	methyltransferase	N/A
PADLOC	UHGV-1481090_18	MTase_II_00074	205.9	0	Type II methyltransferase	RM
Pfam	UHGV-1481090_18	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-1481090_18	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-1481090_18	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1481090_19	PF14282,COG5570	N/A	N/A	N/A	N/A
PHROG	UHGV-1481090_20	phrog_36	76.9	3.3e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-1481090_20	UniRef90_A0A2N0UXQ6	261.0	0	N/A	N/A
eggNOG-mapper	UHGV-1481090_20	1401067.HMPREF0872_06835	90.1	3.2e-21	N/A	N/A
Pfam	UHGV-1481090_20	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1481090_20	PF07374,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1481090_21	K06909	400.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1481090_21	phrog_3717	145.2	1.26117e-44	terminase large subunit	head and packaging
UniRef90	UHGV-1481090_21	UniRef90_A0A2N0ULW5	1016.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1481090_21	411461.DORFOR_01162	615.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1481090_21	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1481090_21	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1481090_21	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1481090_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1481090_21	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1481090_22	phrog_533	324.8	0	portal protein	head and packaging
UniRef90	UHGV-1481090_22	UniRef90_A0A2N0ULU9	842.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1481090_22	1304866.K413DRAFT_3035	474.0	0	N/A	N/A
structural_annotation	UHGV-1481090_22	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1481090_23	phrog_581	301.1	0	minor head protein	head and packaging
UniRef90	UHGV-1481090_23	UniRef90_UPI001897AC3D	1090.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1481090_23	1449050.JNLE01000003_gene3892	360.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1481090_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1481090_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1481090_23	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-1481090_24	phrog_3675	106.6	1.1e-31	N/A	unknown function
UniRef90	UHGV-1481090_24	UniRef90_UPI001C02868E	122.0	4.78e-34	YjcQ family protein	N/A
eggNOG-mapper	UHGV-1481090_24	1235799.C818_04221	120.0	3.07e-34	YjcQ protein	N/A
Pfam	UHGV-1481090_24	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-1481090_24	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-1481090_26	phrog_194	100.9	1.6e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-1481090_26	UniRef90_UPI0018995066	338.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1481090_26	742765.HMPREF9457_02126	167.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1481090_26	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1481090_26	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1481090_27	phrog_422	235.1	0	major head protein	head and packaging
eggNOG-mapper	UHGV-1481090_27	693746.OBV_18090	387.0	0	N/A	N/A
structural_annotation	UHGV-1481090_27	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1481090_28	phrog_541	78.8	5.8e-23	head-tail adaptor	connector
eggNOG-mapper	UHGV-1481090_28	1449050.JNLE01000003_gene3888	78.2	5.28e-17	N/A	N/A
PHROG	UHGV-1481090_29	phrog_3366	63.0	2e-18	N/A	unknown function
eggNOG-mapper	UHGV-1481090_29	1449050.JNLE01000003_gene3887	81.6	4.41e-18	N/A	N/A
Pfam	UHGV-1481090_29	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1481090_29	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1481090_30	phrog_556	119.1	1.2e-35	minor head protein	head and packaging
UniRef90	UHGV-1481090_30	UniRef90_UPI00189BC4F9	350.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1481090_30	1449050.JNLE01000003_gene3886	151.0	1.26117e-44	N/A	N/A
Pfam	UHGV-1481090_30	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1481090_30	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1481090_31	phrog_3266	94.2	1.1e-27	tail completion	connector
eggNOG-mapper	UHGV-1481090_31	1449050.JNLE01000003_gene3885	140.0	1.07e-40	N/A	N/A
structural_annotation	UHGV-1481090_31	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1481090_32	phrog_3099	143.5	9.5008e-43	N/A	unknown function
eggNOG-mapper	UHGV-1481090_32	1160721.RBI_II00532	207.0	0	N/A	N/A
structural_annotation	UHGV-1481090_32	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1481090_33	phrog_11299	115.9	2.9e-34	N/A	unknown function
eggNOG-mapper	UHGV-1481090_33	1449050.JNLE01000003_gene3883	70.1	0.000000000000274	N/A	N/A
structural_annotation	UHGV-1481090_33	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1481090_34	phrog_706	141.9	3.59994e-42	N/A	unknown function
UniRef90	UHGV-1481090_34	UniRef90_UPI001B3C82AE	256.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1481090_34	1160721.RBI_II00530	198.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1481090_34	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1481090_34	PF06854	N/A	N/A	N/A	N/A
KOfam	UHGV-1481090_35	K22300	67.8	2.1e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1481090_35	phrog_8	67.0	3.1e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1481090_35	UniRef90_UPI0005E915F7	78.2	0.00000000000000113	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1481090_35	658086.HMPREF0994_05289	66.6	0.00000000000387	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
PADLOC	UHGV-1481090_35	Control_protein_00002	51.0	0.000000000000029	control protein	RM
Pfam	UHGV-1481090_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1481090_35	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1481090_35	PF01381,MF_02017,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1481090_36	UniRef90_A0A1C5V1G9	56.2	0.00000000565	Predicted transcriptional regulator	N/A
eggNOG-mapper	UHGV-1481090_36	1507.HMPREF0262_00305	50.1	0.000000244	sequence-specific DNA binding	N/A
Pfam	UHGV-1481090_36	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1481090_36	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
PHROG	UHGV-1481090_38	phrog_1760	127.7	9.5e-38	anti-termination protein	transcription regulation
UniRef90	UHGV-1481090_38	UniRef90_UPI00189A9092	329.0	0	ORF6N domain-containing protein	N/A
eggNOG-mapper	UHGV-1481090_38	1408823.AXUS01000025_gene2655	145.0	1.82001e-40	ORF6N domain	N/A
Pfam	UHGV-1481090_38	PF10543	N/A	N/A	ORF6N domain	ORF6N
COG	UHGV-1481090_38	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
PHROG	UHGV-1481090_39	phrog_1535	304.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1481090_39	33035.JPJF01000093_gene2243	328.0	0	phage tail tape measure protein	N/A
COG	UHGV-1481090_39	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1481090_39	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1481090_40	phrog_1194	62.7	5.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-1481090_40	397290.C810_05238	96.3	1.27e-23	N/A	N/A
Pfam	UHGV-1481090_40	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1481090_40	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1481090_41	phrog_18190	62.9	6.6e-30	N/A	unknown function
eggNOG-mapper	UHGV-1481090_41	483218.BACPEC_01143	70.9	0.0000000003	N/A	N/A
structural_annotation	UHGV-1481090_41	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
UniRef90	UHGV-1481090_42	UniRef90_A0A1C6HHE5	106.0	5.11e-23	BppU_N domain-containing protein	N/A
structural_annotation	UHGV-1481090_42	PF01664	N/A	N/A	N/A	N/A
KOfam	UHGV-1481090_44	K07273	187.3	0	acm; lysozyme	N/A
PHROG	UHGV-1481090_44	phrog_291	173.8	0	endolysin	lysis
UniRef90	UHGV-1481090_44	UniRef90_R6NXV5	414.0	0	Glycoside Hydrolase Family 25-like lysozyme/endolysin	N/A
eggNOG-mapper	UHGV-1481090_44	246199.CUS_5914	158.0	8.12753e-44	hydrolase, family 25	N/A
Pfam	UHGV-1481090_44	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1481090_44	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1481090_44	PF01183,TIGR04303,COG3757,COG5492	N/A	N/A	N/A	N/A