UHGV-1483792 (vOTU-127714)

Viral Genome: UHGV-1483792

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1483792
vOTU ID	vOTU-127714
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0250534
Associated BioSample	SAMEA3879546
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.1 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9826
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.62
Jumbo phage	No

Genome content
Genome length (bp)	36,821
GC content	60.23%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	40
CDS density	95%
Average CDS length (bps)	871.88
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 89.1)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1483792_1	K24213	83.2	2.3e-24	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-1483792_1	phrog_6320	92.2	5.8e-27	tail fiber protein	tail
Pfam	UHGV-1483792_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-1483792_2	phrog_22978	761.2	0	N/A	unknown function
UniRef90	UHGV-1483792_2	UniRef90_A0A1Y4WLF7	805.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-1483792_2	1410650.JHWL01000003_gene2814	496.0	0	N/A	N/A
Pfam	UHGV-1483792_2	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
eggNOG-mapper	UHGV-1483792_3	1410650.JHWL01000003_gene2815	85.1	0.00000000000000577	N/A	N/A
PHROG	UHGV-1483792_5	phrog_38190	62.9	4.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-1483792_5	762211.BSTEL_0610	71.2	0.00000000000277	N/A	N/A
PHROG	UHGV-1483792_7	phrog_511	171.3	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1483792_7	1410650.JHWL01000003_gene2827	269.0	0	N/A	N/A
structural_annotation	UHGV-1483792_7	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-1483792_8	phrog_12105	130.2	8e-39	N/A	unknown function
eggNOG-mapper	UHGV-1483792_8	1226322.HMPREF1545_03850	88.2	8.54e-21	N/A	N/A
PHROG	UHGV-1483792_9	phrog_15239	51.1	0.000000000000021	N/A	unknown function
PHROG	UHGV-1483792_10	phrog_1357	215.7	0	major head protein	head and packaging
UniRef90	UHGV-1483792_10	UniRef90_A0A2V2CFL5	595.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1483792_10	1410650.JHWL01000003_gene2830	272.0	0	N/A	N/A
NCBIFam	UHGV-1483792_10	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1483792_10	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1483792_11	phrog_13908	192.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1483792_11	1410650.JHWL01000003_gene2831	117.0	1.94e-27	N/A	N/A
KOfam	UHGV-1483792_12	K07584	43.0	0.0000000000064	N/A	N/A
PHROG	UHGV-1483792_12	phrog_4478	53.1	0.0000000000000033	peptidase	other
UniRef90	UHGV-1483792_12	UniRef90_UPI001A8F44BB	55.1	0.000000147	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-1483792_12	521098.Aaci_1816	56.2	0.0000000088	Cysteine protease Prp	N/A
Pfam	UHGV-1483792_12	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-1483792_12	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1483792_12	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1483792_13	phrog_156	295.4	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1483792_13	1410650.JHWL01000003_gene2833	522.0	0	N/A	N/A
structural_annotation	UHGV-1483792_13	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-1483792_14	K06909	127.7	1e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1483792_14	phrog_979	127.8	2.8e-39	terminase large subunit	head and packaging
UniRef90	UHGV-1483792_14	UniRef90_A0A810Q5R0	608.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1483792_14	1410650.JHWL01000003_gene2834	565.0	0	N/A	N/A
Pfam	UHGV-1483792_14	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1483792_14	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1483792_14	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1483792_15	phrog_1206	41.2	0.0000000000053	terminase small subunit	head and packaging
KOfam	UHGV-1483792_16	K01160	56.8	6.5e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1483792_16	phrog_1682	79.2	5.8e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1483792_16	UniRef90_A0A174WGH7	120.0	1.49e-32	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-1483792_16	1235790.C805_00029	116.0	3.19e-32	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1483792_16	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1483792_16	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1483792_17	phrog_474	114.3	1.7e-33	phosphofructokinase	other
UniRef90	UHGV-1483792_17	UniRef90_A0A7V6W4J9	114.0	2.5e-30	N/A	N/A
eggNOG-mapper	UHGV-1483792_17	665956.HMPREF1032_00639	112.0	1.51e-30	N/A	N/A
Pfam	UHGV-1483792_17	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-1483792_17	PF19905	N/A	N/A	N/A	N/A
PHROG	UHGV-1483792_18	phrog_21498	300.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1483792_18	78346.BRUM_0376	248.0	0	DNA binding	N/A
COG	UHGV-1483792_18	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1483792_18	PF05869,TIGR01712	N/A	N/A	N/A	N/A
UniRef90	UHGV-1483792_20	UniRef90_A0A8D9PDK2	70.9	0.0000000000000838	Zinc-ribbon containing domain	N/A
PHROG	UHGV-1483792_25	phrog_9474	123.4	2e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1483792_25	UniRef90_A0A1I7FTR4	115.0	6.41e-27	DnaD and phage-associated domain-containing protein	N/A
eggNOG-mapper	UHGV-1483792_25	644966.Tmar_0029	111.0	2.7e-25	HNH endonuclease	N/A
COG	UHGV-1483792_25	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-1483792_26	K03111	141.0	1.29998e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1483792_26	phrog_44	135.2	4.7e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1483792_26	UniRef90_A0A1W1YRF9	183.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1483792_26	1226322.HMPREF1545_04080	177.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1483792_26	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1483792_26	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1483792_26	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1483792_26	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1483792_26	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1483792_27	K07455	289.4	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1483792_27	phrog_148	281.9	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1483792_27	UniRef90_U2SBP2	370.0	0	Recombination and repair protein RecT	N/A
eggNOG-mapper	UHGV-1483792_27	1226322.HMPREF1545_00015	370.0	0	RecT family	N/A
Pfam	UHGV-1483792_27	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1483792_27	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1483792_27	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1483792_27	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1483792_31	phrog_434	317.7	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1483792_31	UniRef90_A0A1Y4L975	298.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1483792_31	1121344.JHZO01000003_gene985	281.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1483792_31	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1483792_31	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1483792_31	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1483792_31	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-1483792_33	K00558	222.5	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1483792_33	phrog_116	259.4	0	DNA methyltransferase	other
UniRef90	UHGV-1483792_33	UniRef90_A0A350THX9	732.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1483792_33	1121334.KB911073_gene1852	613.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1483792_33	MTase_II_00020	96.0	7.9e-31	Type II methyltransferase	RM
Pfam	UHGV-1483792_33	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1483792_33	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1483792_33	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1483792_35	1235835.C814_03153	66.6	0.0000000000001	N/A	N/A
structural_annotation	UHGV-1483792_35	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
NCBIFam	UHGV-1483792_37	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-1483792_37	COG5492	N/A	N/A	N/A	N/A
UniRef90	UHGV-1483792_38	UniRef90_UPI001D0E690A	98.2	1.35e-25	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1483792_38	1321782.HMPREF1986_00318	56.6	0.000000000649	N/A	N/A
structural_annotation	UHGV-1483792_38	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1483792_39	K22300	59.1	1e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1483792_39	phrog_8	55.9	0.0000000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-1483792_39	UniRef90_K1TCM8	107.0	1.19e-27	Protein containing Helix-turn-helix type 3 domain protein	N/A
eggNOG-mapper	UHGV-1483792_39	928210.CALU01000047_gene122	59.7	0.00000000129	Helix-turn-helix domain	N/A
Pfam	UHGV-1483792_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1483792_39	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1483792_39	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1483792_40	K07729	65.9	7.6e-19	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1483792_40	phrog_8	43.7	0.0000000000063	transcriptional regulator	transcription regulation
UniRef90	UHGV-1483792_40	UniRef90_R5AVU4	82.0	2.46e-19	CI-like repressor	N/A
eggNOG-mapper	UHGV-1483792_40	608538.HTH_1322	62.8	0.000000000088	PBP superfamily domain	N/A
Pfam	UHGV-1483792_40	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1483792_40	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1483792_40	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A