UHGV-1484292 (vOTU-165442)

Viral Genome: UHGV-1484292

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1484292
vOTU ID	vOTU-165442
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0143032
Associated BioSample	SAMEA4545371
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.19 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9789
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.54
Jumbo phage	No

Genome content
Genome length (bp)	19,637
GC content	57.96%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	35
CDS density	95%
Average CDS length (bps)	533.23
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 53.19)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1484292_2	K01447	119.8	3.2e-35	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1484292_2	phrog_9611	138.9	3.20001e-41	endolysin	lysis
UniRef90	UHGV-1484292_2	UniRef90_A0A3D1VCL7	455.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-1484292_2	97138.C820_00738	231.0	0	Ami_2	N/A
Pfam	UHGV-1484292_2	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1484292_2	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1484292_2	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1484292_3	phrog_10091	119.4	1.9e-35	holin	lysis
UniRef90	UHGV-1484292_3	UniRef90_R5MCL9	144.0	3.5593e-43	Holin phage phi LC3 family	N/A
eggNOG-mapper	UHGV-1484292_3	445975.COLSTE_02144	131.0	4.41e-39	Bacteriophage holin	N/A
Pfam	UHGV-1484292_3	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1484292_3	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1484292_3	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1484292_3	COG5546	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1484292_5	693746.OBV_01600	88.6	2.34e-16	N/A	N/A
eggNOG-mapper	UHGV-1484292_6	1519439.JPJG01000011_gene53	381.0	0	N/A	N/A
PHROG	UHGV-1484292_7	phrog_474	102.9	4.7e-30	phosphofructokinase	other
UniRef90	UHGV-1484292_7	UniRef90_K1TIM3	133.0	2.49e-37	N/A	N/A
eggNOG-mapper	UHGV-1484292_7	1203606.HMPREF1526_00237	100.0	3.6e-25	N/A	N/A
Pfam	UHGV-1484292_7	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-1484292_7	PF19905	N/A	N/A	N/A	N/A
KOfam	UHGV-1484292_9	K03091	43.0	0.0000000000079	sigH; RNA polymerase sporulation-specific sigma factor	N/A
eggNOG-mapper	UHGV-1484292_9	1469948.JPNB01000001_gene1935	52.4	0.00000676	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	N/A
Pfam	UHGV-1484292_9	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
NCBIFam	UHGV-1484292_9	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-1484292_9	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
UniRef90	UHGV-1484292_17	UniRef90_UPI001A9B9FB4	261.0	0	FAD-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-1484292_17	1410632.JHWW01000006_gene695	200.0	0	N/A	N/A
Pfam	UHGV-1484292_17	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
structural_annotation	UHGV-1484292_17	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-1484292_19	phrog_1770	54.5	0.0000000000000022	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1484292_19	536233.CLO_1822	124.0	1.06e-33	N/A	N/A
structural_annotation	UHGV-1484292_19	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-1484292_20	phrog_8489	206.6	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1484292_20	UniRef90_A0A829FB24	210.0	0	Phage replication initiation protein	N/A
eggNOG-mapper	UHGV-1484292_20	1139219.I569_01402	195.0	0	DnaD domain protein	N/A
COG	UHGV-1484292_20	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1484292_20	PF09681,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-1484292_21	K03111	70.5	4.1e-20	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1484292_21	phrog_44	63.7	4.6e-18	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1484292_21	UniRef90_A0A0A2WRK7	55.5	0.00000342	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1484292_21	1301100.HG529418_gene3025	59.7	0.00000000379	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1484292_21	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-1484292_21	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1484292_21	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1484292_22	phrog_14970	253.0	0	N/A	unknown function
UniRef90	UHGV-1484292_22	UniRef90_A0A3P6JH63	213.0	0	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-1484292_22	411468.CLOSCI_00315	214.0	0	double-strand break repair protein	N/A
Pfam	UHGV-1484292_22	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-1484292_22	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1484292_22	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
Pfam	UHGV-1484292_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1484292_26	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1484292_26	PF13744,NF007481,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1484292_28	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1484292_29	1131462.DCF50_p2449	54.7	0.000000681	Bacterial Ig-like domain 2	N/A
NCBIFam	UHGV-1484292_29	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-1484292_29	COG5492	N/A	N/A	N/A	N/A
KOfam	UHGV-1484292_31	K22300	57.3	3.9e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1484292_31	phrog_4	52.3	0.000000000000014	transcriptional repressor	transcription regulation
UniRef90	UHGV-1484292_31	UniRef90_K1UM29	186.0	0	Helix-turn-helix domain protein (Fragment)	N/A
eggNOG-mapper	UHGV-1484292_31	903814.ELI_1263	139.0	8.58996e-41	Helix-turn-helix domain	N/A
Pfam	UHGV-1484292_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1484292_31	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1484292_31	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1484292_33	K07729	59.0	1.1e-16	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1484292_33	phrog_3	45.2	0.0000000000035	transcriptional repressor	transcription regulation
UniRef90	UHGV-1484292_33	UniRef90_R5AVU4	94.7	2.37e-24	CI-like repressor	N/A
eggNOG-mapper	UHGV-1484292_33	1869.MB27_26960	55.5	0.00000000171	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1484292_33	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1484292_33	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-1484292_35	K14059	116.1	5.4e-34	int; integrase	N/A
PHROG	UHGV-1484292_35	phrog_1	134.6	8.5e-40	integrase	integration and excision
UniRef90	UHGV-1484292_35	UniRef90_A0A2Z4QB94	295.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1484292_35	1321782.HMPREF1986_00315	94.4	5.4e-19	Phage integrase family	N/A
Pfam	UHGV-1484292_35	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1484292_35	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1484292_35	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A