UHGV-1484564 (vOTU-089053)

Viral Genome: UHGV-1484564

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-1484564
vOTU ID	vOTU-089053
Representative Genome?	Yes
Source	MGV
Original Genome ID	MGV-GENOME-0191185
Associated Biosample	SAMEA4545405
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	61.96 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	9
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9809
Viral Hallmark Genes (geNomad)	2
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	30.98
Jumbo Phage?	No

Genome Content
Length (bps)	26,444
GC Content	56.32%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	56
CDS Density	93%
Average CDS Length (bps)	437.36
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 61.96)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1484564_1	K14059	151.4	9.80909e-45	int; integrase	N/A
PHROG	UHGV-1484564_1	phrog_1	170.1	0	integrase	integration and excision
UniRef90	UHGV-1484564_1	UniRef90_A0A8D9UGU2	650.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1484564_1	693746.OBV_41260	304.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1484564_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1484564_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1484564_1	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-1484564_2	UniRef90_A0A8D9UHA6	85.9	2.69e-18	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-1484564_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1484564_2	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1484564_5	phrog_8	47.9	0.0000000000000038	transcriptional regulator	transcription regulation
UniRef90	UHGV-1484564_5	UniRef90_A0A1G7UMP0	57.8	0.000000378	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1484564_5	642492.Clole_0928	60.5	0.00000000254	addiction module antidote protein HigA	N/A
Pfam	UHGV-1484564_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1484564_5	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1484564_5	PF01381,MF_00535,NF041951,TIGR02607,COG3655,COG3093	N/A	N/A	N/A	N/A
PHROG	UHGV-1484564_6	phrog_8	48.2	0.00000000000025	transcriptional regulator	transcription regulation
UniRef90	UHGV-1484564_6	UniRef90_A0A412EXN2	56.6	0.00000000321	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1484564_6	1497679.EP56_15175	55.5	0.00000000173	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1484564_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1484564_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1484564_6	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1484564_7	phrog_3	41.4	0.000000000056	transcriptional repressor	transcription regulation
eggNOG-mapper	UHGV-1484564_7	1054460.SPPN_08995	48.9	0.00000617	transcriptional	N/A
Pfam	UHGV-1484564_7	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1484564_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-1484564_9	UniRef90_A0A8D9PDM8	136.0	7.94004e-41	Pyocin activator protein	N/A
PHROG	UHGV-1484564_11	phrog_22529	51.3	0.000000000000015	N/A	unknown function
UniRef90	UHGV-1484564_11	UniRef90_A0A8D9UHA1	202.0	0	3D containing protein	N/A
eggNOG-mapper	UHGV-1484564_11	658088.HMPREF0987_02675	63.5	0.00000000163	peptidase	N/A
Pfam	UHGV-1484564_11	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-1484564_11	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-1484564_11	COG3584	N/A	N/A	N/A	N/A
UniRef90	UHGV-1484564_13	UniRef90_A0A8D9UH91	274.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1484564_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1484564_13	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1484564_13	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-1484564_15	phrog_253	84.0	2.1e-24	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1484564_15	UniRef90_A0A8D9PDS3	200.0	0	Resistance protein	N/A
eggNOG-mapper	UHGV-1484564_15	748224.HMPREF9436_03356	97.8	1.31e-23	Siphovirus Gp157	N/A
Pfam	UHGV-1484564_15	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1484564_15	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1484564_16	phrog_155	158.4	0	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1484564_16	UniRef90_UPI00130EB09C	197.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1484564_16	748224.HMPREF9436_03360	178.0	0	ERF superfamily	N/A
Pfam	UHGV-1484564_16	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1484564_16	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1484564_17	phrog_72	42.6	0.0000000000046	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1484564_17	UniRef90_A0A8D9PDS2	309.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-1484564_17	445972.ANACOL_01825	130.0	5.71e-36	N/A	N/A
structural_annotation	UHGV-1484564_17	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1484564_18	phrog_7566	98.9	2.7e-29	N/A	unknown function
UniRef90	UHGV-1484564_18	UniRef90_A0A8D9UHC0	179.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-1484564_18	693746.OBV_24070	119.0	1.28e-33	N/A	N/A
structural_annotation	UHGV-1484564_19	PF12844,MF_00535,NF041951,COG5499	N/A	N/A	N/A	N/A
KOfam	UHGV-1484564_20	K03111	148.0	9.10844e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1484564_20	phrog_44	148.9	2.66247e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1484564_20	UniRef90_A0A810QFR8	197.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1484564_20	1007096.BAGW01000023_gene151	195.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1484564_20	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1484564_20	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1484564_20	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1484564_20	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1484564_20	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1484564_23	phrog_15768	45.0	0.0000000000021	N/A	unknown function
UniRef90	UHGV-1484564_23	UniRef90_UPI0019563B2C	77.8	9.37e-17	N/A	N/A
eggNOG-mapper	UHGV-1484564_23	1121344.JHZO01000003_gene982	58.2	0.00000000419	N/A	N/A
Pfam	UHGV-1484564_23	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1484564_23	PF19808	N/A	N/A	N/A	N/A
UniRef90	UHGV-1484564_24	UniRef90_A0A8D9PDS1	53.5	0.0000015	Replisome organizer	N/A
structural_annotation	UHGV-1484564_24	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1484564_26	phrog_190	109.5	2.7e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1484564_26	UniRef90_A0A8D9PDD6	251.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-1484564_26	1226322.HMPREF1545_00295	120.0	1.13e-32	N/A	N/A
Pfam	UHGV-1484564_26	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1484564_26	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-1484564_28	K00571	103.6	8.3e-31	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1484564_28	phrog_23224	89.9	1e-32	DNA methyltransferase	other
UniRef90	UHGV-1484564_28	UniRef90_UPI001331804A	277.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1484564_28	1268240.ATFI01000007_gene431	208.0	0	DNA methylase	N/A
PADLOC	UHGV-1484564_28	MTase_II_00172	133.4	2.1e-39	Type II methyltransferase	RM
Pfam	UHGV-1484564_28	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1484564_28	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1484564_28	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1484564_30	phrog_757	228.7	0	DNA methyltransferase	other
UniRef90	UHGV-1484564_30	UniRef90_UPI001A9B5584	236.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1484564_30	1235790.C805_00032	219.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1484564_30	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1484564_30	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1484564_31	phrog_111	140.4	9.90017e-42	DNA methyltransferase	other
UniRef90	UHGV-1484564_31	UniRef90_A0A1L5KS67	197.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
eggNOG-mapper	UHGV-1484564_31	445972.ANACOL_03344	178.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-1484564_31	oMTase_00015	163.5	0	orphan methyltransferase	RM
Pfam	UHGV-1484564_31	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-1484564_31	PF05869,TIGR01712,COG0338	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1484564_33	PF09947,NF006816,COG4830	N/A	N/A	N/A	N/A
Pfam	UHGV-1484564_36	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-1484564_37	phrog_599	46.3	0.00000000000089	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1484564_37	UniRef90_A0A315Y4I9	107.0	1.57e-28	Lar family restriction alleviation protein	N/A
Pfam	UHGV-1484564_37	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1484564_37	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-1484564_37	TIGR03655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1484564_39	UniRef90_A0A8D9PDT5	63.9	0.0000000000519	Hydrogenase/urease nickel incorporation protein	N/A
eggNOG-mapper	UHGV-1484564_43	665956.HMPREF1032_00651	47.0	0.00000515	N/A	N/A
PHROG	UHGV-1484564_45	phrog_25567	60.3	2.7e-17	N/A	unknown function
UniRef90	UHGV-1484564_45	UniRef90_UPI00164AED9E	127.0	9.77e-36	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1484564_45	877424.ATWC01000004_gene577	53.9	0.000000637	sequence-specific DNA binding	N/A
Pfam	UHGV-1484564_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1484564_45	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-1484564_45	NF040522,COG2944	N/A	N/A	N/A	N/A
UniRef90	UHGV-1484564_48	UniRef90_A0A8D9PDT2	178.0	0	Brinker DNA-binding domain protein	N/A
eggNOG-mapper	UHGV-1484564_48	1226322.HMPREF1545_00042	139.0	1.76e-40	N/A	N/A
structural_annotation	UHGV-1484564_48	PF04218,COG3677	N/A	N/A	N/A	N/A
KOfam	UHGV-1484564_49	K06909	121.7	7.3e-36	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1484564_49	phrog_979	197.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1484564_49	UniRef90_A0A8D9PDR5	953.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-1484564_49	748224.HMPREF9436_02548	611.0	0	Terminase-like family	N/A
Pfam	UHGV-1484564_49	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1484564_49	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1484564_49	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1484564_50	phrog_156	334.0	0	portal protein	head and packaging
UniRef90	UHGV-1484564_50	UniRef90_A0A8D9UH10	1128.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1484564_50	748224.HMPREF9436_01396	535.0	0	N/A	N/A
structural_annotation	UHGV-1484564_50	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
UniRef90	UHGV-1484564_51	UniRef90_A0A8D9PDR6	169.0	0	YsxB-like protein	N/A
structural_annotation	UHGV-1484564_51	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1484564_52	phrog_13908	299.3	0	N/A	unknown function
UniRef90	UHGV-1484564_52	UniRef90_A0A844DRV7	112.0	2.13e-24	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-1484564_52	1410650.JHWL01000003_gene2831	119.0	1.98e-28	N/A	N/A
PHROG	UHGV-1484564_53	phrog_1357	258.9	0	major head protein	head and packaging
UniRef90	UHGV-1484564_53	UniRef90_A0A8D9UH64	702.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1484564_53	1449126.JQKL01000003_gene1695	416.0	0	N/A	N/A
Pfam	UHGV-1484564_53	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1484564_53	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1484564_53	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1484564_54	phrog_15239	88.3	3.9e-26	N/A	unknown function
eggNOG-mapper	UHGV-1484564_54	1449126.JQKL01000003_gene1694	51.6	0.00000193	N/A	N/A
PHROG	UHGV-1484564_55	phrog_366	43.0	0.000000000006	tail fiber protein	tail
Pfam	UHGV-1484564_55	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-1484564_55	PF10651	N/A	N/A	N/A	N/A
Pfam	UHGV-1484564_56	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen