UHGV-1484873 (vOTU-128255)

Viral Genome: UHGV-1484873

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1484873
vOTU ID	vOTU-128255
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0259495
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.84 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9762
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.12
Jumbo phage	No

Genome content
Genome length (bp)	38,359
GC content	37.34%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	81%
Average CDS length (bps)	565.91
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 65.84)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1484873_1	phrog_20016	193.7	0	N/A	unknown function
UniRef90	UHGV-1484873_1	UniRef90_A0A285PT46	162.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1484873_1	397290.C810_05214	173.0	0	N/A	N/A
structural_annotation	UHGV-1484873_1	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1484873_2	658655.HMPREF0988_00915	120.0	9.8e-31	N/A	N/A
eggNOG-mapper	UHGV-1484873_3	397290.C810_01336	105.0	3e-28	N/A	N/A
PHROG	UHGV-1484873_4	phrog_130	183.6	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1484873_4	UniRef90_A0A2Z4UD85	385.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1484873_4	658655.HMPREF0988_00912	315.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-1484873_4	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1484873_4	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1484873_4	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1484873_4	PF03374,PF02498,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-1484873_5	UniRef90_A0A832RJS1	53.1	0.000000109	LITAF domain-containing protein	N/A
structural_annotation	UHGV-1484873_5	TIGR04165,COG3478	N/A	N/A	N/A	N/A
KOfam	UHGV-1484873_6	K07448	133.2	2e-39	mrr; restriction system protein	N/A
PHROG	UHGV-1484873_6	phrog_19856	50.0	0.000000000000029	N/A	unknown function
UniRef90	UHGV-1484873_6	UniRef90_A0A173S6M0	163.0	4.2039e-45	Restriction endonuclease	N/A
eggNOG-mapper	UHGV-1484873_6	1235790.C805_00010	148.0	4.14e-41	Restriction endonuclease	N/A
PADLOC	UHGV-1484873_6	ZorD1_00005	66.7	3.4e-19	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-1484873_6	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-1484873_6	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
UniRef90	UHGV-1484873_7	UniRef90_A0A8D9UIC9	53.1	0.0000000524	Alginate and motility regulator	N/A
eggNOG-mapper	UHGV-1484873_7	658655.HMPREF0988_00909	50.4	0.000000107	N/A	N/A
Pfam	UHGV-1484873_7	PF12651	N/A	N/A	Ribbon-helix-helix domain	RHH_3
structural_annotation	UHGV-1484873_7	PF01402,COG4710	N/A	N/A	N/A	N/A
Pfam	UHGV-1484873_9	PF12651	N/A	N/A	Ribbon-helix-helix domain	RHH_3
structural_annotation	UHGV-1484873_9	PF01402,NF041793,COG3905	N/A	N/A	N/A	N/A
UniRef90	UHGV-1484873_10	UniRef90_UPI001106069C	73.2	5.44e-16	ribbon-helix-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1484873_10	1235793.C809_02220	72.0	2.68e-16	N/A	N/A
Pfam	UHGV-1484873_10	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-1484873_10	PF01402,NF041793,COG3905	N/A	N/A	N/A	N/A
PHROG	UHGV-1484873_12	phrog_373	65.4	2.5e-21	anti-repressor	transcription regulation
UniRef90	UHGV-1484873_12	UniRef90_C6LG85	119.0	8.07e-30	Phage regulatory protein, Rha family	N/A
eggNOG-mapper	UHGV-1484873_12	478749.BRYFOR_07645	119.0	1.35e-30	Phage regulatory protein	N/A
Pfam	UHGV-1484873_12	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-1484873_12	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-1484873_12	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-1484873_12	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-1484873_16	phrog_13890	40.8	0.000000000029	N/A	unknown function
structural_annotation	UHGV-1484873_16	PF19807,NF010256,COG4453	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1484873_18	397290.C810_01353	154.0	1.68156e-44	N/A	N/A
PHROG	UHGV-1484873_20	phrog_1233	85.4	7.6e-25	N/A	unknown function
eggNOG-mapper	UHGV-1484873_20	357809.Cphy_2967	87.4	8.18e-21	N/A	N/A
KOfam	UHGV-1484873_24	K04087	80.4	1.8e-23	hflC; modulator of FtsH protease HflC	N/A
PHROG	UHGV-1484873_24	phrog_200	169.2	0	lipoprotein	other
UniRef90	UHGV-1484873_24	UniRef90_C0BA46	475.0	0	SPFH/Band 7/PHB domain protein	N/A
eggNOG-mapper	UHGV-1484873_24	537007.BLAHAN_05484	297.0	0	prohibitin homologues	N/A
Pfam	UHGV-1484873_24	PF01145	N/A	N/A	SPFH domain / Band 7 family	Band_7
COG	UHGV-1484873_24	COG0330	N/A	N/A	Regulator of protease activity HflC, stomatin/prohibitin superfamily	N/A
structural_annotation	UHGV-1484873_24	PF01145,MF_01562,NF008181,COG0330	N/A	N/A	N/A	N/A
UniRef90	UHGV-1484873_28	UniRef90_A0A6M3L1T0	126.0	6.28e-33	Putative HNH endonuclease (Fragment)	N/A
Pfam	UHGV-1484873_28	PF13391	N/A	N/A	HNH endonuclease	HNH_2
PHROG	UHGV-1484873_31	phrog_38	168.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1484873_31	UniRef90_A0A318EQM2	523.0	0	Putative phage terminase large subunit-like protein	N/A
eggNOG-mapper	UHGV-1484873_31	1123263.AUKY01000015_gene1608	328.0	0	chromosome segregation	N/A
COG	UHGV-1484873_31	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1484873_31	PF17289,PF05876,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1484873_32	phrog_36	58.3	1.5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1484873_32	UniRef90_A0A7C6JU72	70.1	0.00000000000171	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1484873_32	397290.C810_01391	89.4	9.33e-21	N/A	N/A
Pfam	UHGV-1484873_32	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-1484873_32	PF04545,MF_00245,NF001068,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1484873_33	phrog_64	139.6	1.79997e-41	portal protein	head and packaging
UniRef90	UHGV-1484873_33	UniRef90_R6CA99	558.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-1484873_33	1298920.KI911353_gene2663	427.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1484873_33	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1484873_33	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1484873_35	phrog_14558	41.3	0.000000000011	tail spike protein	tail
eggNOG-mapper	UHGV-1484873_35	864702.OsccyDRAFT_3183	58.2	0.000000543	Pectate lyase superfamily protein	N/A
Pfam	UHGV-1484873_35	PF12708	N/A	N/A	Pectate lyase superfamily protein	Pectate_lyase_3
COG	UHGV-1484873_35	COG2931	N/A	N/A	Ca2+-binding protein, RTX toxin-related	N/A
PHROG	UHGV-1484873_37	phrog_2742	81.3	1.3e-23	endolysin	lysis
UniRef90	UHGV-1484873_37	UniRef90_A0A173ZHV9	706.0	0	Clostridial hydrophobic W	N/A
eggNOG-mapper	UHGV-1484873_37	411462.DORLON_00764	256.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1484873_37	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-1484873_37	PF07538	N/A	N/A	Clostridial hydrophobic W	ChW
COG	UHGV-1484873_37	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1484873_37	PF01520,TIGR02883,COG5492,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-1484873_39	phrog_909	78.0	9.5e-23	major head protein	head and packaging
UniRef90	UHGV-1484873_39	UniRef90_R7BGI8	202.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1484873_39	1536772.R70723_06665	57.8	0.00000000291	N/A	N/A
PHROG	UHGV-1484873_40	phrog_29	174.3	0	major head protein	head and packaging
UniRef90	UHGV-1484873_40	UniRef90_A0A1C5WIT9	592.0	0	Phage major capsid protein E	N/A
eggNOG-mapper	UHGV-1484873_40	1347368.HG964404_gene4993	159.0	5.57717e-43	Phage major capsid protein E	N/A
Pfam	UHGV-1484873_40	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1484873_40	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1484873_41	UniRef90_A0A416G2T8	60.5	0.000000000269	Rho_N domain-containing protein	N/A
structural_annotation	UHGV-1484873_41	PF21169	N/A	N/A	N/A	N/A
PHROG	UHGV-1484873_43	phrog_4105	86.5	1.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-1484873_43	411459.RUMOBE_00911	141.0	2.51953e-42	N/A	N/A
PHROG	UHGV-1484873_44	phrog_1129	66.4	2.9e-19	holin	lysis
UniRef90	UHGV-1484873_44	UniRef90_A0A3D5IBP7	131.0	5.14e-38	Enolase	N/A
eggNOG-mapper	UHGV-1484873_44	411461.DORFOR_00721	103.0	6.33e-28	N/A	N/A
Pfam	UHGV-1484873_44	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1484873_44	PF06946	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1484873_45	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1484873_46	phrog_5	49.9	0.000000000000071	tail completion or Neck1 protein	connector
UniRef90	UHGV-1484873_46	UniRef90_UPI001BBD4500	124.0	4.51e-33	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1484873_46	397290.C810_01411	127.0	9.12e-35	N/A	N/A
structural_annotation	UHGV-1484873_46	PF17395,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1484873_47	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-1484873_48	UniRef90_A0A8D9PGN2	181.0	0	Major tail protein	N/A
eggNOG-mapper	UHGV-1484873_48	1232453.BAIF02000058_gene1634	54.3	0.0000004	N/A	N/A
structural_annotation	UHGV-1484873_48	PF16463,TIGR02126,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1484873_49	UniRef90_UPI001D0975F6	101.0	3.6e-25	N/A	N/A
PHROG	UHGV-1484873_51	phrog_167	358.2	0	tail length tape measure protein	tail
UniRef90	UHGV-1484873_51	UniRef90_UPI00131A0471	730.0	0	transglycosylase SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-1484873_51	397290.C810_01419	456.0	0	Transglycosylase SLT domain	N/A
Pfam	UHGV-1484873_51	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-1484873_51	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
structural_annotation	UHGV-1484873_51	NF012014	N/A	N/A	N/A	N/A
PHROG	UHGV-1484873_52	phrog_1194	49.5	0.000000000000073	N/A	unknown function
eggNOG-mapper	UHGV-1484873_52	585501.HMPREF6123_0824	82.8	1.22e-18	N/A	N/A
structural_annotation	UHGV-1484873_52	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1484873_53	phrog_13879	288.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1484873_53	1304866.K413DRAFT_0774	413.0	0	N/A	N/A
structural_annotation	UHGV-1484873_53	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1484873_54	phrog_18725	57.9	2e-16	N/A	unknown function
eggNOG-mapper	UHGV-1484873_54	1304866.K413DRAFT_0773	73.6	0.000000000000008	N/A	N/A
eggNOG-mapper	UHGV-1484873_55	1304866.K413DRAFT_0769	70.5	0.000000000000997	N/A	N/A