UHGV-1485028 (vOTU-035825)

Viral Genome: UHGV-1485028

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1485028
vOTU ID	vOTU-035825
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0291113
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.16 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9786
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.93
Jumbo phage	No

Genome content
Genome length (bp)	44,536
GC content	37.00%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	72
CDS density	86%
Average CDS length (bps)	531.50
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 72.16)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1485028_3	phrog_15198	130.2	6e-39	N/A	unknown function
UniRef90	UHGV-1485028_3	UniRef90_A0A174BBL3	432.0	0	N/A	N/A
eggNOG-mapper	UHGV-1485028_3	658655.HMPREF0988_00863	211.0	0	N/A	N/A
Pfam	UHGV-1485028_3	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-1485028_4	phrog_16129	74.7	3.9e-22	excisionase	integration and excision
UniRef90	UHGV-1485028_4	UniRef90_R6C2W3	150.0	1.82169e-44	DNA binding domain excisionase family	N/A
eggNOG-mapper	UHGV-1485028_4	1042156.CXIVA_25060	92.4	9.24e-23	Excisionase from transposon Tn916	N/A
Pfam	UHGV-1485028_4	PF09035	N/A	N/A	Excisionase from transposon Tn916	Tn916-Xis
NCBIFam	UHGV-1485028_4	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-1485028_4	PF09035,PF00196,MF_00674,NF033787,NF008895,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-1485028_5	K14059	274.3	0	int; integrase	N/A
PHROG	UHGV-1485028_5	phrog_1	245.2	0	integrase	integration and excision
UniRef90	UHGV-1485028_5	UniRef90_R7QYW6	514.0	0	Site-specific recombinase phage integrase family	N/A
eggNOG-mapper	UHGV-1485028_5	411489.CLOL250_01458	438.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1485028_5	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1485028_5	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1485028_5	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1485028_5	PF00589,PF02920,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1485028_6	658655.HMPREF0988_00920	105.0	1.18e-29	N/A	N/A
PHROG	UHGV-1485028_7	phrog_21718	49.8	0.000000000000033	N/A	unknown function
eggNOG-mapper	UHGV-1485028_7	658655.HMPREF0988_00919	282.0	0	N/A	N/A
structural_annotation	UHGV-1485028_7	NF033819	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1485028_8	658655.HMPREF0988_00918	150.0	0	N/A	N/A
PHROG	UHGV-1485028_9	phrog_16490	286.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1485028_9	658655.HMPREF0988_00917	410.0	0	N/A	N/A
eggNOG-mapper	UHGV-1485028_10	658655.HMPREF0988_00916	270.0	0	N/A	N/A
eggNOG-mapper	UHGV-1485028_11	658655.HMPREF0988_00915	411.0	0	N/A	N/A
PHROG	UHGV-1485028_12	phrog_1233	43.5	0.0000000000053	N/A	unknown function
UniRef90	UHGV-1485028_12	UniRef90_A0A345BPX6	100.0	1.64e-25	Metal-dependent hydrolase	N/A
eggNOG-mapper	UHGV-1485028_12	658655.HMPREF0988_00914	219.0	0	N/A	N/A
PHROG	UHGV-1485028_14	phrog_2657	208.7	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-1485028_14	UniRef90_R7BHB1	355.0	0	Phage regulatory protein Rha family	N/A
eggNOG-mapper	UHGV-1485028_14	33035.JPJF01000043_gene993	322.0	0	N/A	N/A
Pfam	UHGV-1485028_14	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-1485028_14	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-1485028_14	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-1485028_14	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
UniRef90	UHGV-1485028_15	UniRef90_F7JKT1	114.0	1.71e-32	C2H2-type domain-containing protein	N/A
KOfam	UHGV-1485028_16	K07493	495.4	0	K07493; putative transposase	N/A
PHROG	UHGV-1485028_16	phrog_2331	529.0	0	transposase	integration and excision
UniRef90	UHGV-1485028_16	UniRef90_A0A3R6NU38	760.0	0	Mutator family transposase	N/A
eggNOG-mapper	UHGV-1485028_16	411460.RUMTOR_01317	805.0	0	N/A	N/A
Pfam	UHGV-1485028_16	PF00872	N/A	N/A	Transposase, Mutator family	Transposase_mut
NCBIFam	UHGV-1485028_16	NF033543.1	N/A	N/A	IS256 family transposase	N/A
COG	UHGV-1485028_16	COG3328	N/A	N/A	Transposase (or an inactivated derivative)	N/A
structural_annotation	UHGV-1485028_16	PF00872,NF033543,COG3328	N/A	N/A	N/A	N/A
PHROG	UHGV-1485028_17	phrog_8545	52.4	0.0000000000000045	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1485028_17	UniRef90_UPI001D05CE4F	346.0	0	OB-fold putative lipoprotein	N/A
eggNOG-mapper	UHGV-1485028_17	1304866.K413DRAFT_0836	174.0	0	tRNA_anti-like	N/A
Pfam	UHGV-1485028_17	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
structural_annotation	UHGV-1485028_17	PF12869,PF10571,MF_01959,TIGR03943,COG5235	N/A	N/A	N/A	N/A
UniRef90	UHGV-1485028_18	UniRef90_UPI001ADDDCFE	63.5	0.00000000000542	CopG family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1485028_18	663952.SDD27957_09060	51.2	0.0000000617	N/A	N/A
PHROG	UHGV-1485028_20	phrog_374	165.0	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1485028_20	UniRef90_A0A1Y4FBI7	157.0	1.97023e-42	HTH psq-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1485028_20	645991.Sgly_0324	148.0	9.18005e-41	N/A	N/A
structural_annotation	UHGV-1485028_20	PF07768	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1485028_22	PF19807,NF010256,COG4453	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1485028_23	658655.HMPREF0988_00899	108.0	6.55e-31	N/A	N/A
eggNOG-mapper	UHGV-1485028_24	658655.HMPREF0988_00898	132.0	4.81e-40	N/A	N/A
UniRef90	UHGV-1485028_27	UniRef90_A0A8D9UIS5	137.0	6.17e-37	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1485028_27	658655.HMPREF0988_00895	268.0	0	N/A	N/A
PHROG	UHGV-1485028_35	phrog_38	144.3	7.90332e-43	terminase large subunit	head and packaging
UniRef90	UHGV-1485028_35	UniRef90_A0A4Q5C857	1152.0	0	Terminase_6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1485028_35	397290.C810_01390	682.0	0	chromosome segregation	N/A
COG	UHGV-1485028_35	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1485028_35	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-1485028_36	phrog_36	63.2	4.9e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1485028_36	UniRef90_A0A6N7XL46	82.4	5.3e-17	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-1485028_36	1121289.JHVL01000007_gene2767	73.9	0.0000000000000116	sigma factor activity	N/A
COG	UHGV-1485028_36	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1485028_36	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
Pfam	UHGV-1485028_37	PF10601	N/A	N/A	LITAF-like zinc ribbon domain	zf-LITAF-like
PHROG	UHGV-1485028_38	phrog_64	156.3	0	portal protein	head and packaging
UniRef90	UHGV-1485028_38	UniRef90_A0A4Q5C6V0	937.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1485028_38	1232453.BAIF02000058_gene1625	340.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1485028_38	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1485028_38	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-1485028_40	UniRef90_R6C0B6	58.9	0.000000178	Phage capsid scaffolding protein	N/A
PHROG	UHGV-1485028_41	phrog_909	76.4	3e-22	major head protein	head and packaging
UniRef90	UHGV-1485028_41	UniRef90_R7BGI8	191.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1485028_41	1536772.R70723_06665	50.8	0.00000147	N/A	N/A
PHROG	UHGV-1485028_42	phrog_29	152.6	2.8026e-45	major head protein	head and packaging
UniRef90	UHGV-1485028_42	UniRef90_A0A1C5WIT9	677.0	0	Phage major capsid protein E	N/A
eggNOG-mapper	UHGV-1485028_42	1347368.HG964404_gene4993	161.0	1.03696e-43	Phage major capsid protein E	N/A
Pfam	UHGV-1485028_42	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1485028_42	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1485028_43	UniRef90_A0A416G2T8	62.8	0.0000000000414	Rho_N domain-containing protein	N/A
structural_annotation	UHGV-1485028_43	PF21169	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1485028_44	397290.C810_01402	75.9	2.27e-16	N/A	N/A
Pfam	UHGV-1485028_44	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
PHROG	UHGV-1485028_45	phrog_937	61.1	1.8e-17	hemolysin	other
eggNOG-mapper	UHGV-1485028_45	411459.RUMOBE_01081	95.9	3.68e-24	N/A	N/A
PHROG	UHGV-1485028_46	phrog_18218	134.9	2.2e-40	N/A	unknown function
UniRef90	UHGV-1485028_46	UniRef90_A0A3D0FFR6	144.0	1.09021e-42	Ribonuclease	N/A
eggNOG-mapper	UHGV-1485028_46	411902.CLOBOL_03424	83.6	2.38e-19	N/A	N/A
structural_annotation	UHGV-1485028_46	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-1485028_47	K07273	199.8	0	acm; lysozyme	N/A
PHROG	UHGV-1485028_47	phrog_291	154.5	1.4013e-45	endolysin	lysis
UniRef90	UHGV-1485028_47	UniRef90_A0A173YXL7	583.0	0	N-acetylmuramoyl-L-alanine amidase sle1	N/A
eggNOG-mapper	UHGV-1485028_47	33035.JPJF01000043_gene994	268.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1485028_47	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1485028_47	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-1485028_47	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1485028_47	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1485028_47	PF01183,PF11623,COG3757,COG2139	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1485028_48	1298920.KI911353_gene2656	84.0	1.01e-18	N/A	N/A
PHROG	UHGV-1485028_49	phrog_5	53.2	0.0000000000000056	tail completion or Neck1 protein	connector
UniRef90	UHGV-1485028_49	UniRef90_UPI001BBD4500	140.0	1.99e-39	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1485028_49	397290.C810_01411	203.0	0	N/A	N/A
Pfam	UHGV-1485028_49	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1485028_49	PF17395,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1485028_50	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1485028_51	476272.RUMHYD_01968	172.0	0	N/A	N/A
structural_annotation	UHGV-1485028_51	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1485028_52	phrog_36112	100.3	1.5e-29	N/A	unknown function
UniRef90	UHGV-1485028_52	UniRef90_A0A8D9PG71	118.0	5.83e-31	Tail assembly chaperone protein	N/A
eggNOG-mapper	UHGV-1485028_52	1298920.KI911353_gene2651	128.0	1.79e-35	N/A	N/A
structural_annotation	UHGV-1485028_52	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-1485028_54	phrog_167	358.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1485028_54	UniRef90_UPI001D081BB8	1471.0	0	transglycosylase SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-1485028_54	397290.C810_01419	463.0	0	Transglycosylase SLT domain	N/A
Pfam	UHGV-1485028_54	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-1485028_54	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-1485028_55	phrog_1194	48.9	0.00000000000011	N/A	unknown function
eggNOG-mapper	UHGV-1485028_55	585501.HMPREF6123_0824	78.2	7.77e-17	N/A	N/A
structural_annotation	UHGV-1485028_55	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1485028_56	phrog_13879	288.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1485028_56	742740.HMPREF9474_03516	564.0	0	N/A	N/A
structural_annotation	UHGV-1485028_56	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1485028_57	phrog_18725	57.9	2.1e-16	N/A	unknown function
eggNOG-mapper	UHGV-1485028_57	742740.HMPREF9474_03517	78.2	1.27e-16	N/A	N/A
PHROG	UHGV-1485028_58	phrog_13141	171.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1485028_58	665950.HMPREF1025_02519	215.0	0	N/A	N/A
PHROG	UHGV-1485028_59	phrog_2712	52.3	0.0000000000000086	tail fiber protein	tail
eggNOG-mapper	UHGV-1485028_59	553973.CLOHYLEM_05669	68.2	0.0000000000107	to Mitochondrial intermediate peptidase K01410	N/A
COG	UHGV-1485028_59	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
PHROG	UHGV-1485028_60	phrog_27545	66.3	3.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-1485028_60	1235799.C818_04237	57.8	0.000000961	N/A	N/A
UniRef90	UHGV-1485028_62	UniRef90_A0A1C5WLL2	239.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1485028_62	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1485028_62	PF13443,PF00717,MF_00015,NF041951,TIGR02228,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1485028_64	K18830	65.5	1.2e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1485028_64	phrog_2967	58.3	8.3e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1485028_64	UniRef90_UPI001D06FE9D	177.0	0	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1485028_64	97139.C824_05937	101.0	4.26e-26	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-1485028_64	retron_type_VI_hth_cluster2_1	43.0	0.0000000000035	N/A	Retron
Pfam	UHGV-1485028_64	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1485028_64	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1485028_64	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1485028_67	K07741	199.1	0	antB; anti-repressor protein	N/A
PHROG	UHGV-1485028_67	phrog_63	177.6	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1485028_67	UniRef90_UPI001C00DDF6	324.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-1485028_67	658655.HMPREF0988_02592	277.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-1485028_67	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1485028_67	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1485028_67	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1485028_67	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
PHROG	UHGV-1485028_69	phrog_4292	73.4	1.7e-21	N/A	unknown function
eggNOG-mapper	UHGV-1485028_69	411460.RUMTOR_01375	88.2	1.83e-22	N/A	N/A
PHROG	UHGV-1485028_72	phrog_7964	127.5	8e-38	N/A	unknown function
UniRef90	UHGV-1485028_72	UniRef90_A0A4S2Q3Z3	65.1	0.00000000000287	Polymer-forming cytoskeletal protein (Fragment)	N/A
eggNOG-mapper	UHGV-1485028_72	665950.HMPREF1025_02555	110.0	8.43e-29	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-1485028_72	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-1485028_72	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A