UHGV-1485733 (vOTU-106186)

Viral Genome: UHGV-1485733

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1485733
vOTU ID	vOTU-106186
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0190249
Associated BioSample	SAMEA3664754
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.71 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9761
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.62
Jumbo phage	No

Genome content
Genome length (bp)	26,294
GC content	40.70%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	40
CDS density	94%
Average CDS length (bps)	618.45
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 88.71)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1485733_1	K14059	101.0	1.9e-29	int; integrase	N/A
PHROG	UHGV-1485733_1	phrog_1	131.9	6.3e-39	integrase	integration and excision
UniRef90	UHGV-1485733_1	UniRef90_A0A374MXE7	798.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1485733_1	693746.OBV_41260	187.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1485733_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1485733_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1485733_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1485733_2	UniRef90_A0A374DTF3	122.0	8.14e-33	N/A	N/A
KOfam	UHGV-1485733_3	K22300	51.7	0.00000000000002	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1485733_3	phrog_2328	41.7	0.000000000014	transcriptional repressor	transcription regulation
UniRef90	UHGV-1485733_3	UniRef90_A0A373KVP1	107.0	1.17e-27	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1485733_3	525254.HMPREF0072_0267	79.3	1.97e-17	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1485733_3	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1485733_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1485733_3	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1485733_5	phrog_6058	42.6	0.000000000007	N/A	unknown function
structural_annotation	UHGV-1485733_5	NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1485733_8	PF04570,COG2075	N/A	N/A	N/A	N/A
PHROG	UHGV-1485733_9	phrog_674	154.5	0	N/A	unknown function
UniRef90	UHGV-1485733_9	UniRef90_A0A374N9T8	564.0	0	N/A	N/A
eggNOG-mapper	UHGV-1485733_9	1408437.JNJN01000039_gene373	186.0	0	N/A	N/A
Pfam	UHGV-1485733_9	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1485733_9	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-1485733_10	K07455	198.7	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1485733_10	phrog_148	213.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1485733_10	UniRef90_A0A374N9W0	519.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-1485733_10	428127.EUBDOL_01509	275.0	0	RecT family	N/A
Pfam	UHGV-1485733_10	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1485733_10	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1485733_10	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1485733_10	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1485733_11	K06167	51.3	0.000000000000017	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1485733_11	phrog_392	120.6	1.6e-35	metal-dependent hydrolase	other
UniRef90	UHGV-1485733_11	UniRef90_A0A373XYI8	435.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1485733_11	665956.HMPREF1032_03101	162.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-1485733_11	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-1485733_11	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1485733_11	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-1485733_12	phrog_398	204.2	0	N/A	unknown function
UniRef90	UHGV-1485733_12	UniRef90_UPI000C7B20DA	189.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-1485733_12	293826.Amet_2584	182.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-1485733_12	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-1485733_12	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-1485733_13	phrog_2562	133.2	2.5e-39	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1485733_13	UniRef90_A0A374NA85	566.0	0	N/A	N/A
eggNOG-mapper	UHGV-1485733_13	1235790.C805_00030	154.0	3.15012e-42	N/A	N/A
Pfam	UHGV-1485733_13	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-1485733_13	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1485733_13	PF14297	N/A	N/A	N/A	N/A
KOfam	UHGV-1485733_14	K02315	141.3	7.79963e-42	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1485733_14	phrog_50	138.9	3.80004e-41	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1485733_14	UniRef90_A0A374MYR7	561.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-1485733_14	1507.HMPREF0262_00302	199.0	0	Bacterial dnaA protein	N/A
Pfam	UHGV-1485733_14	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1485733_14	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1485733_14	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1485733_15	phrog_824	137.5	4.60004e-41	N/A	unknown function
UniRef90	UHGV-1485733_15	UniRef90_A0A374MXE9	253.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1485733_15	1235792.C808_00622	131.0	2.31e-36	VRR_NUC	N/A
Pfam	UHGV-1485733_15	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1485733_15	PF08774	N/A	N/A	N/A	N/A
UniRef90	UHGV-1485733_16	UniRef90_A0A374NAD2	531.0	0	GIY-YIG domain-containing protein	N/A
eggNOG-mapper	UHGV-1485733_16	1078085.HMPREF1210_01161	73.2	0.00000000000172	GIY-YIG catalytic domain	N/A
Pfam	UHGV-1485733_16	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
structural_annotation	UHGV-1485733_16	PF19835,TIGR01453	N/A	N/A	N/A	N/A
UniRef90	UHGV-1485733_19	UniRef90_A0A374N9T4	67.0	0.000000000000145	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1485733_19	479437.Elen_1666	47.8	0.00000942	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1485733_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1485733_19	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1485733_21	PF02796,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-1485733_22	K22300	41.2	0.000000000033	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1485733_22	phrog_8	51.3	0.000000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-1485733_22	UniRef90_A0A412ULX1	139.0	1.10997e-41	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1485733_22	226185.EF_1277	55.5	0.0000000143	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1485733_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1485733_22	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1485733_22	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1485733_23	phrog_119	53.1	0.0000000000000045	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1485733_23	UniRef90_A0A374N9T6	248.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1485733_23	1235793.C809_01915	121.0	1.31e-33	HNH endonuclease	N/A
COG	UHGV-1485733_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1485733_24	phrog_1066	116.0	1.8e-34	N/A	unknown function
UniRef90	UHGV-1485733_24	UniRef90_A0A0D0SQQ8	86.7	1.76e-19	N/A	N/A
eggNOG-mapper	UHGV-1485733_24	1203606.HMPREF1526_00982	104.0	1.33e-27	N/A	N/A
PHROG	UHGV-1485733_25	phrog_9	395.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1485733_25	UniRef90_A0A374NB45	981.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1485733_25	1235793.C809_01917	723.0	0	Phage Terminase	N/A
Pfam	UHGV-1485733_25	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1485733_25	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1485733_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1485733_25	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1485733_26	phrog_12	180.8	0	portal protein	head and packaging
UniRef90	UHGV-1485733_26	UniRef90_A0A374NAE1	774.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1485733_26	626523.GCWU000342_01027	406.0	0	Portal protein	N/A
Pfam	UHGV-1485733_26	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1485733_26	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1485733_26	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1485733_27	phrog_21498	297.7	0	N/A	unknown function
UniRef90	UHGV-1485733_27	UniRef90_C7MM70	232.0	0	ParB-like nuclease	N/A
eggNOG-mapper	UHGV-1485733_27	469378.Ccur_02830	232.0	0	DNA binding	N/A
COG	UHGV-1485733_27	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1485733_27	PF05869,TIGR01712	N/A	N/A	N/A	N/A
KOfam	UHGV-1485733_28	K01358	119.9	3.2e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1485733_28	phrog_94	189.5	0	head maturation protease	head and packaging
UniRef90	UHGV-1485733_28	UniRef90_A0A374NBM3	398.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1485733_28	1203606.HMPREF1526_00979	184.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1485733_28	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1485733_28	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1485733_28	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1485733_29	phrog_10	152.0	5.60519e-45	major head protein	head and packaging
UniRef90	UHGV-1485733_29	UniRef90_A0A374N9V9	732.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1485733_29	1280689.AUJC01000011_gene1521	327.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1485733_29	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1485733_29	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1485733_29	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1485733_29	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1485733_30	phrog_5223	54.9	0.0000000000000013	neck protein	connector
eggNOG-mapper	UHGV-1485733_30	931626.Awo_c31020	48.1	0.00000641	N/A	N/A
NCBIFam	UHGV-1485733_30	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-1485733_30	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1485733_31	phrog_1951	95.6	2.9e-28	head-tail adaptor	connector
UniRef90	UHGV-1485733_31	UniRef90_A0A374MZF9	182.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-1485733_31	1414720.CBYM010000040_gene1649	65.5	0.00000000000199	head-tail adaptor	N/A
COG	UHGV-1485733_31	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1485733_31	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1485733_32	UniRef90_UPI001A9B6FBF	165.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1485733_32	1414720.CBYM010000040_gene1650	130.0	4.46e-37	N/A	N/A
structural_annotation	UHGV-1485733_32	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1485733_33	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1485733_34	phrog_885	137.8	6.59998e-41	major tail protein	tail
UniRef90	UHGV-1485733_34	UniRef90_Q894J4	162.0	0	Conserved protein	N/A
eggNOG-mapper	UHGV-1485733_34	1321814.HMPREF9089_00935	173.0	0	N/A	N/A
structural_annotation	UHGV-1485733_34	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1485733_35	phrog_1021	49.0	0.000000000000005	N/A	unknown function
eggNOG-mapper	UHGV-1485733_35	1321778.HMPREF1982_03556	53.5	0.000000188	N/A	N/A
PHROG	UHGV-1485733_37	phrog_23464	257.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1485733_37	665950.HMPREF1025_02660	182.0	1.4013e-45	phage tail tape measure protein	N/A
COG	UHGV-1485733_37	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1485733_37	COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-1485733_38	UniRef90_A0A1G5CPA2	112.0	1.69e-26	Phage-related protein	N/A
eggNOG-mapper	UHGV-1485733_38	1246.JMEA01000006_gene51	67.8	0.000000000117	phage tail	N/A
COG	UHGV-1485733_38	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1485733_38	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1485733_39	phrog_1067	140.4	1.10002e-41	minor head protein	head and packaging
UniRef90	UHGV-1485733_39	UniRef90_A0A348ZBV6	178.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1485733_39	1160721.RBI_I01574	125.0	3e-28	Prophage endopeptidase tail	N/A
Pfam	UHGV-1485733_39	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1485733_39	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1485733_39	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1485733_39	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-1485733_40	UniRef90_A0A374N9Y2	306.0	0	N/A	N/A
Pfam	UHGV-1485733_40	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-1485733_40	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A