UHGV-1487628 (vOTU-022894)

Viral Genome: UHGV-1487628

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1487628
vOTU ID	vOTU-022894
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0198615
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.36 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9729
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.41
Jumbo phage	No

Genome content
Genome length (bp)	27,731
GC content	37.32%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	42
CDS density	91%
Average CDS length (bps)	601.93
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 79.36)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1487628_1	phrog_19280	91.8	7.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-1487628_1	1160721.RBI_I01572	73.9	0.00000000000124	N/A	N/A
structural_annotation	UHGV-1487628_1	PF10651,NF010435	N/A	N/A	N/A	N/A
PHROG	UHGV-1487628_4	phrog_1067	395.0	0	minor head protein	head and packaging
UniRef90	UHGV-1487628_4	UniRef90_A0A7C9HAK5	1075.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1487628_4	1160721.RBI_I01574	429.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1487628_4	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1487628_4	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1487628_4	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1487628_4	PF14594,PF04862,PF20843,TIGR01665,NF033675,COG4926,COG4266	N/A	N/A	N/A	N/A
PHROG	UHGV-1487628_5	phrog_33	60.2	5.2e-17	distal tail protein Dit	tail
UniRef90	UHGV-1487628_5	UniRef90_UPI00164BA811	160.0	5.60519e-45	phage tail family protein	N/A
eggNOG-mapper	UHGV-1487628_5	1444306.JFZC01000034_gene2623	142.0	7.27e-39	tail component	N/A
COG	UHGV-1487628_5	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1487628_5	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1487628_6	phrog_1272	427.2	0	tail length tape measure protein	tail
UniRef90	UHGV-1487628_6	UniRef90_A0A0M6WZJ0	513.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1487628_6	946235.CAER01000065_gene2435	310.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-1487628_6	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1487628_6	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1487628_6	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1487628_6	PF10145,MF_04138,TIGR01760,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1487628_7	411468.CLOSCI_00541	83.2	2.27e-20	N/A	N/A
PHROG	UHGV-1487628_8	phrog_29863	43.1	0.0000000000072	N/A	unknown function
eggNOG-mapper	UHGV-1487628_8	411468.CLOSCI_00542	85.9	2.52e-20	N/A	N/A
structural_annotation	UHGV-1487628_8	PF17388	N/A	N/A	N/A	N/A
PHROG	UHGV-1487628_9	phrog_2175	86.6	3e-25	protein with Ig domain	other
eggNOG-mapper	UHGV-1487628_9	457421.CBFG_03714	228.0	0	N/A	N/A
structural_annotation	UHGV-1487628_9	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1487628_10	411468.CLOSCI_00544	86.3	2.57e-20	N/A	N/A
structural_annotation	UHGV-1487628_10	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1487628_11	phrog_5	41.5	0.000000000033	tail completion or Neck1 protein	connector
UniRef90	UHGV-1487628_11	UniRef90_A0A7C9LD40	114.0	2.48e-30	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1487628_11	397291.C804_05237	79.3	2.45e-17	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1487628_11	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1487628_11	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1487628_12	phrog_1951	68.3	8.1e-20	head-tail adaptor	connector
UniRef90	UHGV-1487628_12	UniRef90_UPI00189EBA11	78.6	3.39e-17	phage head closure protein	N/A
eggNOG-mapper	UHGV-1487628_12	1121423.JONT01000041_gene949	51.6	0.000000368	head-tail adaptor	N/A
NCBIFam	UHGV-1487628_12	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-1487628_12	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1487628_12	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1487628_13	phrog_5223	81.6	5.3e-24	neck protein	connector
UniRef90	UHGV-1487628_13	UniRef90_A0A7C9LAV1	105.0	1.73e-27	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1487628_13	1203606.HMPREF1526_00977	73.2	0.00000000000000142	N/A	N/A
Pfam	UHGV-1487628_14	PF02037	N/A	N/A	SAP domain	SAP
structural_annotation	UHGV-1487628_14	PF14000	N/A	N/A	N/A	N/A
PHROG	UHGV-1487628_15	phrog_10	140.1	1.79997e-41	major head protein	head and packaging
UniRef90	UHGV-1487628_15	UniRef90_C9LCN3	483.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-1487628_15	411470.RUMGNA_02065	483.0	0	N/A	N/A
Pfam	UHGV-1487628_15	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1487628_15	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1487628_15	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1487628_15	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1487628_16	K06904	97.8	1.4e-28	N/A	N/A
PHROG	UHGV-1487628_16	phrog_80	118.6	7.2e-35	head maturation protease	head and packaging
UniRef90	UHGV-1487628_16	UniRef90_A0A7C9L2H1	265.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1487628_16	397290.C810_00420	245.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-1487628_16	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1487628_16	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1487628_16	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1487628_16	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1487628_17	phrog_12	99.4	3e-29	portal protein	head and packaging
UniRef90	UHGV-1487628_17	UniRef90_A0A7C9LEF5	596.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1487628_17	397290.C810_00419	553.0	0	Phage portal protein	N/A
Pfam	UHGV-1487628_17	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1487628_17	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1487628_17	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1487628_18	phrog_9	347.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-1487628_18	UniRef90_A0A7C9KZF1	877.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1487628_18	397290.C810_00418	845.0	0	Phage Terminase	N/A
Pfam	UHGV-1487628_18	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1487628_18	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1487628_18	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1487628_18	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1487628_19	phrog_1066	107.5	7.5e-32	N/A	unknown function
eggNOG-mapper	UHGV-1487628_19	397290.C810_00417	163.0	0	N/A	N/A
structural_annotation	UHGV-1487628_19	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-1487628_20	K07451	43.9	0.0000000000038	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1487628_20	phrog_119	66.9	2.8e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1487628_20	UniRef90_R6SPQ8	127.0	2.64e-36	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-1487628_20	411470.RUMGNA_02060	127.0	4.42e-37	HNH endonuclease	N/A
Pfam	UHGV-1487628_20	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1487628_20	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1487628_21	phrog_1558	132.7	2e-39	N/A	unknown function
UniRef90	UHGV-1487628_21	UniRef90_UPI001EE9266C	128.0	7.08e-35	sigma-70 region 4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1487628_21	397290.C810_00415	157.0	0	N/A	N/A
structural_annotation	UHGV-1487628_21	PF08281,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-1487628_22	UniRef90_A0A3R6K9T6	81.6	4.06e-19	Chemotaxis protein	N/A
eggNOG-mapper	UHGV-1487628_22	1042156.CXIVA_01520	67.0	0.0000000000000455	N/A	N/A
structural_annotation	UHGV-1487628_22	PF10723,NF008671,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-1487628_25	K03497	67.8	1.6e-19	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1487628_25	phrog_15982	237.3	0	N/A	unknown function
UniRef90	UHGV-1487628_25	UniRef90_A0A7C9HAH3	551.0	0	N/A	N/A
eggNOG-mapper	UHGV-1487628_25	411470.RUMGNA_02052	415.0	0	N/A	N/A
Pfam	UHGV-1487628_25	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1487628_25	PF12961	N/A	N/A	N/A	DUF3850
COG	UHGV-1487628_25	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1487628_25	PF12961,PF02195,MF_02015,MF_00684,TIGR04285,NF003443,COG1475,COG3097	N/A	N/A	N/A	N/A
KOfam	UHGV-1487628_26	K03496	165.4	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1487628_26	phrog_164	163.6	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1487628_26	UniRef90_A0A7C9H418	345.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1487628_26	397288.C806_00082	272.0	0	AAA domain	N/A
Pfam	UHGV-1487628_26	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1487628_26	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1487628_26	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-1487628_27	phrog_824	141.9	1.90016e-42	N/A	unknown function
UniRef90	UHGV-1487628_27	UniRef90_A0A7C9H491	207.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1487628_27	397290.C810_00407	172.0	0	VRR_NUC	N/A
Pfam	UHGV-1487628_27	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1487628_27	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-1487628_28	phrog_3584	215.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1487628_28	411470.RUMGNA_02047	389.0	0	N/A	N/A
structural_annotation	UHGV-1487628_28	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-1487628_29	phrog_26861	89.5	2.2e-26	N/A	unknown function
UniRef90	UHGV-1487628_29	UniRef90_A0A1M6MM35	76.3	0.000000000000138	Single-strand binding protein family protein	N/A
eggNOG-mapper	UHGV-1487628_29	1292035.H476_3036	74.3	0.000000000000122	Single-strand binding protein family	N/A
Pfam	UHGV-1487628_29	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-1487628_29	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1487628_29	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-1487628_30	UniRef90_UPI00157038BF	64.7	0.00000000602	N/A	N/A
eggNOG-mapper	UHGV-1487628_30	1280688.AUJB01000009_gene1785	60.1	0.0000000615	N/A	N/A
Pfam	UHGV-1487628_30	PF18941	N/A	N/A	N/A	DUF5688
KOfam	UHGV-1487628_32	K04763	195.4	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1487628_32	phrog_1	166.4	0	integrase	integration and excision
UniRef90	UHGV-1487628_32	UniRef90_A0A6L5YHS5	421.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1487628_32	1188240.MYEA_5710	196.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1487628_32	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1487628_32	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1487628_32	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1487628_32	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-1487628_33	K03427	59.8	4e-17	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-1487628_33	phrog_5696	178.4	0	N/A	unknown function
UniRef90	UHGV-1487628_33	UniRef90_A0A0M6WYD5	199.0	0	N6_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-1487628_33	1235835.C814_00379	114.0	2.87e-28	N-6 DNA Methylase	N/A
Pfam	UHGV-1487628_33	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-1487628_33	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-1487628_33	COG0286	N/A	N/A	N/A	N/A
KOfam	UHGV-1487628_39	K18830	71.7	6.4e-21	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1487628_39	phrog_4	56.8	6e-16	transcriptional repressor	transcription regulation
UniRef90	UHGV-1487628_39	UniRef90_A0A373VSC9	183.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1487628_39	1235793.C809_03587	165.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1487628_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1487628_39	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1487628_39	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1487628_40	K18830	67.9	1.9e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1487628_40	phrog_8	58.0	2.1e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1487628_40	UniRef90_A0A358PUH8	121.0	8.68e-33	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1487628_40	445972.ANACOL_03315	102.0	4.2e-26	N/A	N/A
Pfam	UHGV-1487628_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1487628_40	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-1487628_41	K23779	49.3	0.0000000000001	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
UniRef90	UHGV-1487628_41	UniRef90_A0A3D5LSQ6	101.0	4.67e-27	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1487628_41	411470.RUMGNA_00189	84.3	5.74e-21	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1487628_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1487628_41	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A