UHGV-1488192 (vOTU-023389)

Viral Genome: UHGV-1488192

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1488192
vOTU ID	vOTU-023389
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0198766
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.7 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9778
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.95
Jumbo phage	No

Genome content
Genome length (bp)	27,756
GC content	41.20%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	38
CDS density	92%
Average CDS length (bps)	668.84
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 61.7)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1488192_1	K14059	91.6	1.5e-26	int; integrase	N/A
PHROG	UHGV-1488192_1	phrog_1	130.0	2.6e-38	integrase	integration and excision
UniRef90	UHGV-1488192_1	UniRef90_H7BVF7	687.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1488192_1	742740.HMPREF9474_02388	687.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1488192_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1488192_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1488192_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1488192_2	phrog_888	209.6	0	N/A	unknown function
UniRef90	UHGV-1488192_2	UniRef90_A0A413L784	236.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-1488192_2	445335.CBN_2977	187.0	0	Short C-terminal domain	N/A
Pfam	UHGV-1488192_2	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-1488192_2	PF15947,PF14471	N/A	N/A	N/A	N/A
KOfam	UHGV-1488192_3	K22300	45.7	0.0000000000013	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1488192_3	phrog_2967	43.7	0.0000000000046	transcriptional regulator	transcription regulation
UniRef90	UHGV-1488192_3	UniRef90_UPI00164C71E0	169.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1488192_3	1159488.SEQMU2_01585	49.7	0.00000406	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1488192_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1488192_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-1488192_4	K18830	70.0	4.3e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1488192_4	phrog_8	63.4	4.3e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1488192_4	UniRef90_UPI00164CACBE	139.0	3.03e-40	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1488192_4	445972.ANACOL_03315	122.0	3.31e-34	N/A	N/A
Pfam	UHGV-1488192_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1488192_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1488192_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1488192_7	phrog_9576	67.6	1.9e-19	N/A	unknown function
eggNOG-mapper	UHGV-1488192_7	314315.LCA_0596	77.0	5.19e-17	N/A	N/A
PHROG	UHGV-1488192_9	phrog_130	164.3	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1488192_9	UniRef90_UPI000DE5778A	274.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1488192_9	1203606.HMPREF1526_01124	171.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1488192_9	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1488192_9	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1488192_9	PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1488192_11	PF18330,NF007435,COG3691	N/A	N/A	N/A	N/A
PHROG	UHGV-1488192_12	phrog_6058	59.5	2.3e-17	N/A	unknown function
UniRef90	UHGV-1488192_12	UniRef90_E7GN86	267.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1488192_12	742740.HMPREF9474_02381	267.0	0	N/A	N/A
Pfam	UHGV-1488192_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1488192_12	PF01381,PF12728,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1488192_13	phrog_6247	346.2	0	DNA topoisomerase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1488192_13	1536772.R70723_06570	350.0	0	N/A	N/A
structural_annotation	UHGV-1488192_13	PF21180,MF_00132,NF003335,COG4026	N/A	N/A	N/A	N/A
PHROG	UHGV-1488192_14	phrog_14105	272.6	0	N/A	unknown function
UniRef90	UHGV-1488192_14	UniRef90_UPI0018A0DC22	377.0	0	PPE family protein	N/A
eggNOG-mapper	UHGV-1488192_14	742740.HMPREF9474_02379	252.0	0	dextransucrase activity	N/A
Pfam	UHGV-1488192_14	PF01469	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide_2
COG	UHGV-1488192_14	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
KOfam	UHGV-1488192_15	K14440	100.3	1.3e-29	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-1488192_15	phrog_62	206.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1488192_15	UniRef90_A0A413QWF7	819.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-1488192_15	742740.HMPREF9474_02377	877.0	0	snf2 family	N/A
Pfam	UHGV-1488192_15	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
COG	UHGV-1488192_15	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1488192_15	PF00176,PF00271,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1488192_16	PF10762,MF_01869,NF040944	N/A	N/A	N/A	N/A
KOfam	UHGV-1488192_17	K08309	67.4	3.4e-19	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	N/A
PHROG	UHGV-1488192_17	phrog_19349	220.2	0	N/A	unknown function
UniRef90	UHGV-1488192_17	UniRef90_E7GN80	426.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-1488192_17	742740.HMPREF9474_02375	426.0	0	lytic transglycosylase activity	N/A
Pfam	UHGV-1488192_17	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-1488192_17	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-1488192_17	PF01464,MF_01616,NF011856,COG0741	N/A	N/A	N/A	N/A
KOfam	UHGV-1488192_18	K00571	114.7	1.2e-33	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1488192_18	phrog_67	99.8	1.6e-29	DNA methyltransferase	other
UniRef90	UHGV-1488192_18	UniRef90_UPI001C399578	501.0	0	Site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1488192_18	411468.CLOSCI_00299	486.0	0	DNA methylase	N/A
PADLOC	UHGV-1488192_18	MTase_II_00157	94.0	2.2e-27	Type II methyltransferase	RM
Pfam	UHGV-1488192_18	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1488192_18	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1488192_18	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1488192_19	phrog_93	46.4	0.00000000000051	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1488192_19	UniRef90_E7GN78	234.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1488192_19	742740.HMPREF9474_02373	234.0	0	VRR_NUC	N/A
COG	UHGV-1488192_19	COG1591	N/A	N/A	Holliday junction resolvase Hjc, archaeal type	N/A
structural_annotation	UHGV-1488192_19	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-1488192_20	phrog_5889	67.7	9.9e-20	N/A	unknown function
UniRef90	UHGV-1488192_20	UniRef90_E7GN77	423.0	0	HDc domain-containing protein	N/A
eggNOG-mapper	UHGV-1488192_20	742740.HMPREF9474_02372	423.0	0	Metal dependent phosphohydrolases with conserved 'HD' motif.	N/A
COG	UHGV-1488192_20	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-1488192_20	PF07514,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
PHROG	UHGV-1488192_23	phrog_2872	225.6	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1488192_23	UniRef90_UPI001C017367	622.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1488192_23	742740.HMPREF9474_02369	840.0	0	AAA domain	N/A
structural_annotation	UHGV-1488192_23	PF13479,MF_00350,TIGR01618,COG2087	N/A	N/A	N/A	N/A
PHROG	UHGV-1488192_25	phrog_7778	116.1	2.4e-34	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1488192_25	UniRef90_A0A413QWG1	292.0	0	N/A	N/A
eggNOG-mapper	UHGV-1488192_25	742740.HMPREF9474_02367	292.0	0	N/A	N/A
Pfam	UHGV-1488192_25	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-1488192_25	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1488192_26	phrog_1252	420.8	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1488192_26	UniRef90_A0A1G5G0M3	518.0	0	DNA polymerase	N/A
eggNOG-mapper	UHGV-1488192_26	742740.HMPREF9474_02366	1268.0	0	DNA polymerase elongation subunit (Family B)	N/A
COG	UHGV-1488192_26	COG0417	N/A	N/A	DNA polymerase B elongation subunit	N/A
structural_annotation	UHGV-1488192_26	PF08490,MF_04100,TIGR00592,COG0417	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1488192_27	PF05384,NF041271,COG1579	N/A	N/A	N/A	N/A
KOfam	UHGV-1488192_28	K06919	66.6	3.3e-19	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-1488192_28	phrog_864	447.1	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1488192_28	UniRef90_H7BVJ4	1208.0	0	SF3 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-1488192_28	742740.HMPREF9474_02364	1209.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-1488192_28	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-1488192_28	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-1488192_28	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-1488192_28	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-1488192_28	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-1488192_28	PF19263,PF08706,PF03288,PF09250,MF_04000,TIGR01613,COG3378	N/A	N/A	N/A	N/A
PHROG	UHGV-1488192_29	phrog_6568	75.1	6.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-1488192_29	428125.CLOLEP_01394	47.4	0.00000344	N/A	N/A
structural_annotation	UHGV-1488192_30	PF14090	N/A	N/A	N/A	N/A
PHROG	UHGV-1488192_31	phrog_36	57.1	3.6e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1488192_31	UniRef90_A0A174WV03	94.0	8.63e-22	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	N/A
eggNOG-mapper	UHGV-1488192_31	742740.HMPREF9474_02360	243.0	0	N/A	N/A
structural_annotation	UHGV-1488192_31	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-1488192_32	K07474	162.2	0	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1488192_32	phrog_51	154.3	0	terminase small subunit	head and packaging
UniRef90	UHGV-1488192_32	UniRef90_D4M103	313.0	0	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1488192_32	887325.HMPREF0381_0088	180.0	0	Terminase small subunit	N/A
Pfam	UHGV-1488192_32	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1488192_32	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1488192_32	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1488192_33	K06909	436.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1488192_33	phrog_3717	247.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-1488192_33	UniRef90_A0A844DY69	920.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1488192_33	861454.HMPREF9099_00528	714.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1488192_33	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1488192_33	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1488192_33	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1488192_33	COG1783	N/A	N/A	Phage terminase large subunit	N/A
HAMAP	UHGV-1488192_33	MF_04145	N/A	N/A	Terminase, large subunit	N/A
structural_annotation	UHGV-1488192_33	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1488192_34	phrog_64	318.9	0	portal protein	head and packaging
UniRef90	UHGV-1488192_34	UniRef90_A0A412Q0Q7	927.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1488192_34	742740.HMPREF9474_02357	794.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-1488192_34	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1488192_34	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1488192_35	phrog_115	498.5	0	minor head protein	head and packaging
UniRef90	UHGV-1488192_35	UniRef90_A0A5M8BYE4	1145.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1488192_35	742740.HMPREF9474_02356	716.0	0	Phage head morphogenesis protein, SPP1 gp7 family	N/A
Pfam	UHGV-1488192_35	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1488192_35	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1488192_35	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1488192_35	PF04233,PF04002,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1488192_36	phrog_6473	110.4	6.5e-33	N/A	unknown function
eggNOG-mapper	UHGV-1488192_36	469604.HMPREF0946_01090	106.0	1.56e-29	N/A	N/A
PHROG	UHGV-1488192_37	phrog_194	158.2	0	head scaffolding protein	head and packaging
UniRef90	UHGV-1488192_37	UniRef90_UPI001D0FEDD7	290.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1488192_37	742740.HMPREF9474_02354	275.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-1488192_37	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1488192_37	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1488192_38	phrog_247	292.9	0	major head protein	head and packaging
UniRef90	UHGV-1488192_38	UniRef90_A0A6L9HG48	509.0	0	Phage coat protein	N/A
eggNOG-mapper	UHGV-1488192_38	1095750.HMPREF9970_0286	565.0	0	N/A	N/A
Pfam	UHGV-1488192_38	PF20036	N/A	N/A	Major capsid protein 13-like	Gp13-like
COG	UHGV-1488192_38	COG1106	N/A	N/A	ATPase/GTPase, AAA15 family	N/A
structural_annotation	UHGV-1488192_38	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A