UHGV-1489910 (vOTU-095571)

Viral Genome: UHGV-1489910

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1489910
vOTU ID	vOTU-095571
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0144631
Associated BioSample	SAMEA2738063
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.99 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9819
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.32
Jumbo phage	No

Genome content
Genome length (bp)	19,824
GC content	39.24%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	24
CDS density	93%
Average CDS length (bps)	764.50
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 58.99)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1489910_1	K03685	57.7	1.8e-16	rnc, DROSHA, RNT1; ribonuclease III [EC:3.1.26.3]	N/A
PHROG	UHGV-1489910_1	phrog_28637	74.0	1.9e-21	N/A	unknown function
UniRef90	UHGV-1489910_1	UniRef90_E1MAI0	82.4	1.85e-19	Ribonuclease III	N/A
eggNOG-mapper	UHGV-1489910_1	888833.HMPREF9421_0987	107.0	1.79e-28	Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism	N/A
Pfam	UHGV-1489910_1	PF14622	N/A	N/A	Ribonuclease-III-like	Ribonucleas_3_3
COG	UHGV-1489910_1	COG0571	N/A	N/A	dsRNA-specific ribonuclease	N/A
PHROG	UHGV-1489910_2	phrog_1309	91.9	1.8e-27	endolysin	lysis
UniRef90	UHGV-1489910_2	UniRef90_A0A7X3BPB8	449.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-1489910_2	428127.EUBDOL_01204	197.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1489910_2	PF08460	N/A	N/A	Bacterial SH3 domain	SH3_5
COG	UHGV-1489910_2	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1489910_2	PF08460,NF033202,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-1489910_3	phrog_608	109.3	2.1e-32	holin	lysis
UniRef90	UHGV-1489910_3	UniRef90_A0A1F1CHQ6	202.0	0	Phage holin	N/A
eggNOG-mapper	UHGV-1489910_3	936580.HMPREF1516_0703	107.0	8.29e-29	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1489910_3	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
NCBIFam	UHGV-1489910_3	TIGR01673.1	N/A	N/A	phage holin	N/A
PHROG	UHGV-1489910_4	phrog_199	50.6	0.000000000000021	holin	lysis
UniRef90	UHGV-1489910_4	UniRef90_UPI00189BBF3C	278.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-1489910_4	1051631.F8HGP0_9CAUD	186.0	0	Pfam:Phage_holin_4_1	N/A
Pfam	UHGV-1489910_4	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1489910_4	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-1489910_4	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1489910_5	phrog_1554	202.6	0	N/A	unknown function
UniRef90	UHGV-1489910_5	UniRef90_A0A4V0EM35	345.0	0	N/A	N/A
eggNOG-mapper	UHGV-1489910_5	1005705.HMPREF9967_1055	182.0	0	N/A	N/A
structural_annotation	UHGV-1489910_5	PF07104	N/A	N/A	N/A	N/A
UniRef90	UHGV-1489910_6	UniRef90_F5W039	56.6	0.000000002	Conserved domain protein	N/A
PHROG	UHGV-1489910_7	phrog_2270	513.1	0	N/A	unknown function
UniRef90	UHGV-1489910_7	UniRef90_UPI0018A11039	2095.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1489910_7	1035189.HMPREF9954_1922	1200.0	0	Chaperone of endosialidase	N/A
Pfam	UHGV-1489910_7	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-1489910_7	PF02018	N/A	N/A	Carbohydrate binding domain	CBM_4_9
NCBIFam	UHGV-1489910_7	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1489910_7	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1489910_7	PF14594,PF00629,TIGR01665,TIGR04362,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1489910_8	phrog_33	59.1	1.2e-16	distal tail protein Dit	tail
UniRef90	UHGV-1489910_8	UniRef90_A0A1F1CDE1	457.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1489910_8	999425.HMPREF9186_02046	251.0	0	N/A	N/A
COG	UHGV-1489910_8	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1489910_8	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1489910_9	phrog_58	281.2	0	tail length tape measure protein	tail
UniRef90	UHGV-1489910_9	UniRef90_A0A1F1CDX5	1090.0	0	PblA	N/A
eggNOG-mapper	UHGV-1489910_9	157924.Q9F4J3_9CAUD	623.0	0	peptidoglycan catabolic process	N/A
structural_annotation	UHGV-1489910_9	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-1489910_10	phrog_1633	177.5	0	N/A	unknown function
UniRef90	UHGV-1489910_10	UniRef90_A0A139NAW5	167.0	0	N/A	N/A
eggNOG-mapper	UHGV-1489910_10	157924.Q9F4J4_9CAUD	159.0	0	N/A	N/A
Pfam	UHGV-1489910_10	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-1489910_10	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-1489910_11	phrog_1526	102.8	1.7e-30	N/A	unknown function
UniRef90	UHGV-1489910_11	UniRef90_A0A359YJY2	177.0	0	N/A	N/A
eggNOG-mapper	UHGV-1489910_11	157924.Q9F4J5_9CAUD	101.0	5.98e-27	N/A	N/A
PHROG	UHGV-1489910_12	phrog_117	171.9	0	major tail protein	tail
UniRef90	UHGV-1489910_12	UniRef90_A0A1F1CD89	345.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1489910_12	1321820.HMPREF1983_00927	248.0	0	domain, Protein	N/A
COG	UHGV-1489910_12	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1489910_12	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1489910_13	phrog_123	63.3	4.2e-18	tail terminator	connector
UniRef90	UHGV-1489910_13	UniRef90_A0A139QID5	183.0	0	Phage-associated protein	N/A
eggNOG-mapper	UHGV-1489910_13	768726.HMPREF9178_1058	168.0	0	N/A	N/A
structural_annotation	UHGV-1489910_13	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1489910_14	phrog_387	99.9	1.3e-29	neck protein	connector
UniRef90	UHGV-1489910_14	UniRef90_A0A359YKT8	118.0	2.03e-33	Phage-associated protein	N/A
eggNOG-mapper	UHGV-1489910_14	663952.SDD27957_07245	114.0	1.24e-32	N/A	N/A
PHROG	UHGV-1489910_15	phrog_501	105.0	4.5e-31	head closure Hc1	connector
UniRef90	UHGV-1489910_15	UniRef90_A0A139QHM6	176.0	0	Phage-associated protein	N/A
eggNOG-mapper	UHGV-1489910_15	1589270.A0A0B5A086_9CAUD	168.0	0	N/A	N/A
structural_annotation	UHGV-1489910_15	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1489910_16	phrog_137	131.3	3.1e-39	head-tail adaptor Ad1	connector
UniRef90	UHGV-1489910_16	UniRef90_A0A3R9IJB2	208.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-1489910_16	585203.SMSK564_1282	203.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-1489910_16	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-1489910_16	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1489910_17	phrog_1539	83.4	1.9e-24	Arc-like repressor	transcription regulation
UniRef90	UHGV-1489910_17	UniRef90_A0A4U9YCN7	139.0	1.88993e-41	N/A	N/A
eggNOG-mapper	UHGV-1489910_17	875454.BAEW01000017_gene1595	49.7	0.000000775	N/A	N/A
Pfam	UHGV-1489910_17	PF12949	N/A	N/A	HeH/LEM domain	HeH
structural_annotation	UHGV-1489910_17	PF12949	N/A	N/A	N/A	N/A
PHROG	UHGV-1489910_18	phrog_32396	156.4	0	N/A	unknown function
UniRef90	UHGV-1489910_18	UniRef90_A0A4U9YET5	578.0	0	Phage, major head protein	N/A
eggNOG-mapper	UHGV-1489910_18	1423775.BAMN01000011_gene604	429.0	0	Phage capsid family	N/A
Pfam	UHGV-1489910_18	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
structural_annotation	UHGV-1489910_18	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1489910_19	phrog_36217	150.4	4.2039e-45	N/A	unknown function
UniRef90	UHGV-1489910_19	UniRef90_UPI001F266D97	290.0	0	N/A	N/A
eggNOG-mapper	UHGV-1489910_19	768726.HMPREF9178_1064	208.0	0	N/A	N/A
Pfam	UHGV-1489910_19	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1489910_19	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1489910_20	phrog_17688	511.7	0	N/A	unknown function
UniRef90	UHGV-1489910_20	UniRef90_Q7Y4I6	913.0	0	Gp38	N/A
eggNOG-mapper	UHGV-1489910_20	585203.SMSK564_1286	942.0	0	phage terminase, large subunit	N/A
COG	UHGV-1489910_20	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1489910_20	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1489910_22	phrog_2494	416.7	0	minor head protein	head and packaging
UniRef90	UHGV-1489910_22	UniRef90_Q7Y4I9	350.0	0	Gp35	N/A
eggNOG-mapper	UHGV-1489910_22	768726.HMPREF9178_1067	375.0	0	N/A	N/A
structural_annotation	UHGV-1489910_22	PF15542	N/A	N/A	N/A	N/A
PHROG	UHGV-1489910_23	phrog_104	272.6	0	portal protein	head and packaging
UniRef90	UHGV-1489910_23	UniRef90_A0A4U9YET1	714.0	0	Gp34	N/A
eggNOG-mapper	UHGV-1489910_23	157924.Q7Y4J0_9CAUD	681.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-1489910_23	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1489910_24	phrog_338	110.7	1.6e-32	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1489910_24	UniRef90_A0A359YHZ3	238.0	0	Phage-associated HNH homing endonuclease	N/A
eggNOG-mapper	UHGV-1489910_24	157924.Q7Y4J1_9CAUD	187.0	0	HNH endonuclease	N/A
Pfam	UHGV-1489910_24	PF01844	N/A	N/A	HNH endonuclease	HNH
structural_annotation	UHGV-1489910_24	PF01844,COG1403	N/A	N/A	N/A	N/A