UHGV-1490821 (vOTU-059714)

Viral Genome: UHGV-1490821

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1490821
vOTU ID	vOTU-059714
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0258608
Associated BioSample	SAMN02674597
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9806
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.94
Jumbo phage	No

Genome content
Genome length (bp)	38,202
GC content	57.83%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	68
CDS density	90%
Average CDS length (bps)	502.81
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1490821_1	phrog_119	48.6	0.00000000000011	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1490821_1	UniRef90_A0A174XSZ8	125.0	5.85e-35	Prophage LambdaBa04, GP54	N/A
eggNOG-mapper	UHGV-1490821_1	1235793.C809_01915	122.0	3.01e-34	HNH endonuclease	N/A
COG	UHGV-1490821_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-1490821_2	1297617.JPJD01000059_gene2640	85.5	1.81e-19	N/A	N/A
structural_annotation	UHGV-1490821_2	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1490821_3	phrog_3584	124.6	7e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1490821_3	537013.CLOSTMETH_02141	77.0	0.0000000000000179	N/A	N/A
structural_annotation	UHGV-1490821_3	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-1490821_8	phrog_374	56.3	6.6e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1490821_8	1423807.BACO01000037_gene1103	66.6	0.00000000000647	N/A	N/A
PHROG	UHGV-1490821_11	phrog_190	100.8	1.4e-29	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1490821_11	UniRef90_UPI0006C2AC63	125.0	4.97e-34	N/A	N/A
eggNOG-mapper	UHGV-1490821_11	693746.OBV_25250	120.0	8.16e-33	N/A	N/A
Pfam	UHGV-1490821_11	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1490821_11	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1490821_14	phrog_3136	129.6	9.5e-39	N/A	unknown function
eggNOG-mapper	UHGV-1490821_14	665956.HMPREF1032_00143	93.6	2.38e-20	N/A	N/A
Pfam	UHGV-1490821_14	PF04266	N/A	N/A	ASCH domain	ASCH
KOfam	UHGV-1490821_16	K00558	167.2	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1490821_16	phrog_363	250.2	0	DNA methyltransferase	other
UniRef90	UHGV-1490821_16	UniRef90_G4KRB8	349.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1490821_16	693746.OBV_01900	349.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1490821_16	MTase_II_00058	122.6	3.6e-36	Type II methyltransferase	RM
Pfam	UHGV-1490821_16	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1490821_16	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1490821_16	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1490821_16	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1490821_20	PF05082	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1490821_21	NF041247	N/A	N/A	N/A	N/A
PHROG	UHGV-1490821_23	phrog_1468	57.6	9.4e-17	transcriptional repressor	transcription regulation
UniRef90	UHGV-1490821_23	UniRef90_A0A1Y3RFS1	58.5	0.000000000857	XRE family transcriptional regulator	N/A
structural_annotation	UHGV-1490821_24	PF10548	N/A	N/A	N/A	N/A
KOfam	UHGV-1490821_29	K22300	52.2	0.000000000000014	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1490821_29	phrog_2967	42.5	0.0000000000046	transcriptional regulator	transcription regulation
UniRef90	UHGV-1490821_29	UniRef90_A0A1Y4L0A2	130.0	1.14e-36	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1490821_29	748224.HMPREF9436_01444	109.0	5.13e-29	N/A	N/A
Pfam	UHGV-1490821_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1490821_29	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1490821_29	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1490821_31	K02342	189.8	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-1490821_31	phrog_192	167.0	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1490821_31	UniRef90_UPI001897CA3A	333.0	0	exonuclease	N/A
eggNOG-mapper	UHGV-1490821_31	1437608.BBIA_1844	278.0	0	Exonuclease, DNA polymerase III, epsilon subunit family	N/A
PADLOC	UHGV-1490821_31	cd06127	144.6	7.69313e-43	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-1490821_31	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-1490821_31	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
NCBIFam	UHGV-1490821_31	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-1490821_31	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-1490821_31	PF00929,PF00533,MF_00157,NF005289,COG0847	N/A	N/A	N/A	N/A
PHROG	UHGV-1490821_32	phrog_10292	78.1	4.8e-23	N/A	unknown function
UniRef90	UHGV-1490821_32	UniRef90_A0A416W984	105.0	2.15e-26	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1490821_32	1519439.JPJG01000059_gene1953	82.4	1.14e-17	TM2 domain	N/A
Pfam	UHGV-1490821_32	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-1490821_32	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-1490821_32	COG2314	N/A	N/A	N/A	N/A
Pfam	UHGV-1490821_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1490821_33	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1490821_33	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1490821_34	K06400	247.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1490821_34	phrog_95	263.3	0	integrase	integration and excision
UniRef90	UHGV-1490821_34	UniRef90_G9YSD9	418.0	0	Resolvase protein	N/A
eggNOG-mapper	UHGV-1490821_34	1408437.JNJN01000002_gene1420	408.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1490821_34	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1490821_34	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1490821_34	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1490821_34	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1490821_34	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1490821_35	UniRef90_A0A8F0WD75	80.1	0.00000000000000102	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1490821_35	1378168.N510_03079	71.6	0.000000000000772	N/A	N/A
PHROG	UHGV-1490821_38	phrog_36767	44.4	0.0000000000024	N/A	unknown function
structural_annotation	UHGV-1490821_38	PF10049,COG5428	N/A	N/A	N/A	N/A
PHROG	UHGV-1490821_41	phrog_14030	134.6	6.50001e-40	N/A	unknown function
UniRef90	UHGV-1490821_41	UniRef90_R6LL81	236.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-1490821_41	1121866.AUGK01000003_gene1444	93.2	5.1e-19	amidase activity	N/A
COG	UHGV-1490821_41	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-1490821_42	phrog_6918	95.6	3.3e-28	holin	lysis
UniRef90	UHGV-1490821_42	UniRef90_A0A316QCY7	103.0	1.73e-26	Holin	N/A
eggNOG-mapper	UHGV-1490821_42	1297617.JPJD01000020_gene301	101.0	1.21e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1490821_42	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1490821_42	PF09682,TIGR01673	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1490821_46	1519439.JPJG01000060_gene1895	60.8	0.00000000432	N/A	N/A
structural_annotation	UHGV-1490821_46	PF10618	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1490821_48	742738.HMPREF9460_02534	59.7	0.000000207	N/A	N/A
Pfam	UHGV-1490821_48	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1490821_48	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1490821_49	1519439.JPJG01000060_gene1892	51.2	0.00000425	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-1490821_49	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1490821_50	PF16408,NF033510	N/A	N/A	N/A	N/A
PHROG	UHGV-1490821_51	phrog_10898	286.9	0	N/A	unknown function
UniRef90	UHGV-1490821_51	UniRef90_A0A7U3NJT3	187.0	0	Putative Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1490821_51	717606.PaecuDRAFT_2136	68.2	0.000000000207	S-layer homology domain	N/A
COG	UHGV-1490821_51	COG1520	N/A	N/A	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	N/A
structural_annotation	UHGV-1490821_51	PF19081,PF15418,MF_01905,NF032891,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1490821_53	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1490821_54	PF18614,MF_00085,NF003076	N/A	N/A	N/A	N/A
PHROG	UHGV-1490821_55	phrog_26795	129.4	1e-38	N/A	unknown function
UniRef90	UHGV-1490821_55	UniRef90_A0A5J6T4K8	134.0	3.01e-32	Minor tail protein	N/A
eggNOG-mapper	UHGV-1490821_55	1382315.JPOI01000001_gene271	135.0	1.22e-33	N/A	N/A
structural_annotation	UHGV-1490821_55	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1490821_56	phrog_37549	81.9	8e-28	virion structural protein	head and packaging
UniRef90	UHGV-1490821_56	UniRef90_A0A3D0W045	238.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-1490821_56	1195236.CTER_5103	130.0	5.56e-29	N/A	N/A
structural_annotation	UHGV-1490821_56	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1490821_57	phrog_8462	125.2	7.5e-37	tail length tape measure protein	tail
UniRef90	UHGV-1490821_57	UniRef90_UPI00098F054B	216.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1490821_57	1195236.CTER_5104	206.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1490821_57	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1490821_57	TIGR01760,NF033928	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1490821_58	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1490821_59	phrog_88	82.6	5e-24	major tail protein	tail
UniRef90	UHGV-1490821_59	UniRef90_S0FUN2	112.0	1.05e-27	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1490821_59	1195236.CTER_5106	112.0	1.76e-28	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1490821_59	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-1490821_59	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1490821_59	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1490821_60	phrog_5	43.6	0.0000000000063	tail completion or Neck1 protein	connector
structural_annotation	UHGV-1490821_60	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1490821_61	1487921.DP68_11350	57.0	0.00000000442	N/A	N/A
structural_annotation	UHGV-1490821_61	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1490821_62	phrog_1951	73.7	1.8e-21	head-tail adaptor	connector
UniRef90	UHGV-1490821_62	UniRef90_A0A1F8UNT5	62.0	0.000000000198	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-1490821_62	1094508.Tsac_2422	51.6	0.000000448	Phage head-tail joining protein	N/A
Pfam	UHGV-1490821_62	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-1490821_62	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-1490821_62	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1490821_62	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1490821_63	phrog_5223	41.6	0.000000000017	neck protein	connector
UniRef90	UHGV-1490821_63	UniRef90_E6MGY0	56.6	0.0000000222	Putative phage DNA packaging protein	N/A
eggNOG-mapper	UHGV-1490821_63	887929.HMP0721_1264	56.6	0.00000000372	N/A	N/A
PHROG	UHGV-1490821_64	phrog_10	183.4	0	major head protein	head and packaging
UniRef90	UHGV-1490821_64	UniRef90_UPI00189AE5FE	409.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1490821_64	1280689.AUJC01000011_gene1521	386.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1490821_64	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1490821_64	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1490821_64	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1490821_64	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1490821_65	K01358	129.5	4e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1490821_65	phrog_94	197.8	0	head maturation protease	head and packaging
UniRef90	UHGV-1490821_65	UniRef90_UPI0018979DC8	202.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-1490821_65	1280689.AUJC01000011_gene1520	189.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1490821_65	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1490821_65	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1490821_65	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1490821_66	phrog_12	181.0	0	portal protein	head and packaging
UniRef90	UHGV-1490821_66	UniRef90_C4GAS6	499.0	0	Putative phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-1490821_66	626523.GCWU000342_01027	499.0	0	Portal protein	N/A
Pfam	UHGV-1490821_66	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1490821_66	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1490821_66	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1490821_67	phrog_9	372.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-1490821_67	UniRef90_A0A1Y3W5R1	783.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1490821_67	1203606.HMPREF1526_00981	728.0	0	Terminase	N/A
Pfam	UHGV-1490821_67	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1490821_67	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1490821_67	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1490821_67	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1490821_68	phrog_1066	130.2	7.5e-39	N/A	unknown function
eggNOG-mapper	UHGV-1490821_68	1382358.JHVN01000024_gene1703	124.0	6.78e-35	N/A	N/A
structural_annotation	UHGV-1490821_68	PF05119,TIGR01558	N/A	N/A	N/A	N/A