UHGV-1491570 (vOTU-019005)

Viral Genome: UHGV-1491570

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1491570
vOTU ID	vOTU-019005
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0291343
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.37 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9801
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.9
Jumbo phage	No

Genome content
Genome length (bp)	44,588
GC content	47.36%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	76
CDS density	80%
Average CDS length (bps)	472.07
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 77.37)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1491570_1	phrog_5765	56.8	2.5e-16	N/A	unknown function
UniRef90	UHGV-1491570_1	UniRef90_UPI001D0EF465	65.9	0.000000000000314	BC1881 family protein	N/A
eggNOG-mapper	UHGV-1491570_1	1095750.HMPREF9970_1008	58.5	0.0000000000296	N/A	N/A
NCBIFam	UHGV-1491570_1	NF033495.1	N/A	N/A	BC1881 family protein	N/A
UniRef90	UHGV-1491570_3	UniRef90_A0A1Y3R5J8	48.9	0.00000264	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1491570_3	1160721.RBI_I00206	58.2	0.000000000103	N/A	N/A
Pfam	UHGV-1491570_3	PF09274	N/A	N/A	ParG	ParG
structural_annotation	UHGV-1491570_3	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-1491570_6	phrog_16490	100.7	2.9e-38	N/A	unknown function
eggNOG-mapper	UHGV-1491570_6	1408437.JNJN01000043_gene803	153.0	1.02995e-42	N/A	N/A
eggNOG-mapper	UHGV-1491570_7	1408437.JNJN01000043_gene802	119.0	2.6e-33	N/A	N/A
eggNOG-mapper	UHGV-1491570_8	1408437.JNJN01000043_gene801	87.0	2.04e-18	N/A	N/A
structural_annotation	UHGV-1491570_9	NF010188	N/A	N/A	N/A	N/A
KOfam	UHGV-1491570_10	K13525	127.5	4.1e-38	VCP, CDC48; transitional endoplasmic reticulum ATPase	N/A
PHROG	UHGV-1491570_10	phrog_3757	204.5	0	N/A	unknown function
UniRef90	UHGV-1491570_10	UniRef90_A0A4Z0Y6M2	351.0	0	ATP-dependent zinc metalloprotease FtsH 3	N/A
eggNOG-mapper	UHGV-1491570_10	768710.DesyoDRAFT_1087	210.0	0	ATPase family associated with various cellular activities (AAA)	N/A
PADLOC	UHGV-1491570_10	IetA_00002	188.7	0	NA	ietAS
Pfam	UHGV-1491570_10	PF00004	N/A	N/A	ATPase family associated with various cellular activities (AAA)	AAA
COG	UHGV-1491570_10	COG0464	N/A	N/A	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	N/A
structural_annotation	UHGV-1491570_10	PF00004,MF_00553,TIGR01242,COG1222	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1491570_11	PF07878	N/A	N/A	N/A	N/A
Pfam	UHGV-1491570_12	PF04448	N/A	N/A	N/A	DUF551
KOfam	UHGV-1491570_13	K03496	237.1	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1491570_13	phrog_164	161.9	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1491570_13	UniRef90_A0A1C6BS15	211.0	0	Sporulation initiation inhibitor protein soj	N/A
eggNOG-mapper	UHGV-1491570_13	1408423.JHYA01000021_gene392	194.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-1491570_13	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1491570_13	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1491570_13	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-1491570_15	phrog_4402	105.3	5.3e-31	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1491570_15	UniRef90_A0A0H5Q331	290.0	0	Rep_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1491570_15	999413.HMPREF1094_04438	124.0	7.06e-30	Initiator Replication protein	N/A
Pfam	UHGV-1491570_15	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-1491570_15	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-1491570_15	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-1491570_15	PF01051,PF21205,NF038290,COG5527	N/A	N/A	N/A	N/A
UniRef90	UHGV-1491570_16	UniRef90_A0A2A7AM70	177.0	0	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-1491570_16	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1491570_19	phrog_8	44.3	0.0000000000035	transcriptional regulator	transcription regulation
UniRef90	UHGV-1491570_19	UniRef90_UPI001D05D211	74.3	0.00000000000000661	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1491570_19	693746.OBV_43290	63.2	0.0000000000459	addiction module antidote protein HigA	N/A
COG	UHGV-1491570_19	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1491570_19	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1491570_20	UniRef90_UPI001956DCC9	72.0	0.00000000000000253	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-1491570_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1491570_20	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1491570_21	PF10922	N/A	N/A	N/A	N/A
Pfam	UHGV-1491570_24	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1491570_24	PF13443,TIGR02684,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1491570_25	PF14143	N/A	N/A	N/A	N/A
KOfam	UHGV-1491570_26	K07738	41.5	0.00000000002	nrdR; transcriptional repressor NrdR	N/A
eggNOG-mapper	UHGV-1491570_26	1165096.ARWF01000001_gene689	49.3	0.00000205	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	N/A
Pfam	UHGV-1491570_26	PF01096	N/A	N/A	Transcription factor S-II (TFIIS)	TFIIS_C
COG	UHGV-1491570_26	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-1491570_26	PF04606,NF007241	N/A	N/A	N/A	N/A
PHROG	UHGV-1491570_28	phrog_2872	239.4	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1491570_28	UniRef90_A0A8J6JIF1	273.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1491570_28	754027.HMPREF9554_00709	214.0	0	N/A	N/A
Pfam	UHGV-1491570_28	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1491570_28	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1491570_29	phrog_18107	71.8	1.3e-20	N/A	unknown function
UniRef90	UHGV-1491570_29	UniRef90_UPI00058F46CC	90.1	3.15e-19	N/A	N/A
eggNOG-mapper	UHGV-1491570_29	903814.ELI_1274	152.0	1.82169e-44	N/A	N/A
structural_annotation	UHGV-1491570_29	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1491570_30	phrog_28936	123.1	1.8e-36	N/A	unknown function
eggNOG-mapper	UHGV-1491570_30	573061.Clocel_3563	129.0	7.31e-35	N/A	N/A
structural_annotation	UHGV-1491570_30	PF11645,MF_01490,NF040854	N/A	N/A	N/A	N/A
KOfam	UHGV-1491570_31	K00558	164.9	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1491570_31	phrog_116	198.8	0	DNA methyltransferase	other
UniRef90	UHGV-1491570_31	UniRef90_D4JYK0	653.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1491570_31	718252.FP2_16350	653.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1491570_31	oMTase_00004	220.8	0	orphan methyltransferase	RM
Pfam	UHGV-1491570_31	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1491570_31	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1491570_31	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1491570_31	PF00145,TIGR00675	N/A	N/A	N/A	N/A
PHROG	UHGV-1491570_32	phrog_59	126.0	8.7e-38	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1491570_32	UniRef90_A0A8J7KX41	162.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1491570_32	213777.R9R2C9_9CAUD	112.0	1.05e-28	HNH endonuclease	N/A
PADLOC	UHGV-1491570_32	HEase_00016	103.0	1.9e-30	homing endonuclease	RM
Pfam	UHGV-1491570_32	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1491570_32	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1491570_32	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-1491570_35	K05925	48.8	0.0000000000000082	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	N/A
PHROG	UHGV-1491570_35	phrog_359	119.8	1.6e-35	DNA methyltransferase	other
UniRef90	UHGV-1491570_35	UniRef90_A0A6G3LYN7	289.0	0	DNA methyltransferase	N/A
eggNOG-mapper	UHGV-1491570_35	887325.HMPREF0381_0367	205.0	0	MT-A70	N/A
PADLOC	UHGV-1491570_35	MTase_II_00048	106.9	3.4e-31	Type II methyltransferase	RM
Pfam	UHGV-1491570_35	PF05063	N/A	N/A	MT-A70	MT-A70
COG	UHGV-1491570_35	COG4725	N/A	N/A	N6-adenosine-specific RNA methylase IME4	N/A
structural_annotation	UHGV-1491570_35	PF05063,MF_01872,NF010253,COG4725	N/A	N/A	N/A	N/A
PHROG	UHGV-1491570_36	phrog_843	62.1	6.4e-18	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1491570_36	UniRef90_UPI001159D907	116.0	8.12e-30	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1491570_36	929506.CbC4_1203	108.0	2.45e-27	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-1491570_36	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-1491570_38	phrog_4856	41.2	0.000000000028	nucleoside triphosphate pyrophosphohydrolase	other
structural_annotation	UHGV-1491570_38	PF11998,COG5420	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1491570_43	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1491570_44	K17080	76.3	5.4e-23	PHB1; prohibitin 1	N/A
PHROG	UHGV-1491570_44	phrog_200	152.0	4.2039e-45	lipoprotein	other
UniRef90	UHGV-1491570_44	UniRef90_D4KCF4	384.0	0	Membrane protease subunits, stomatin/prohibitin homologs	N/A
eggNOG-mapper	UHGV-1491570_44	657322.FPR_23460	384.0	0	prohibitin homologues	N/A
Pfam	UHGV-1491570_44	PF01145	N/A	N/A	SPFH domain / Band 7 family	Band_7
COG	UHGV-1491570_44	COG0330	N/A	N/A	Regulator of protease activity HflC, stomatin/prohibitin superfamily	N/A
structural_annotation	UHGV-1491570_44	PF01145,MF_01562,NF008181,COG0330	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1491570_46	PF15731,TIGR03831	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1491570_49	NF041588	N/A	N/A	N/A	N/A
KOfam	UHGV-1491570_52	K19779	41.3	0.000000000024	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-1491570_52	phrog_599	49.8	0.000000000000078	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-1491570_52	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1491570_52	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1491570_52	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1491570_52	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1491570_53	phrog_15768	92.6	1.8e-27	N/A	unknown function
UniRef90	UHGV-1491570_53	UniRef90_A0A6N7WKT0	89.7	2.49e-18	N/A	N/A
eggNOG-mapper	UHGV-1491570_53	402612.FP2295	77.8	0.0000000000000291	N/A	N/A
Pfam	UHGV-1491570_53	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1491570_53	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1491570_54	K02314	214.5	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1491570_54	phrog_19	219.2	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1491570_54	UniRef90_UPI001CBC4B63	422.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1491570_54	1203606.HMPREF1526_01325	159.0	2.17005e-41	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1491570_54	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1491570_54	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1491570_54	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1491570_55	phrog_419	108.8	5.5e-32	N/A	unknown function
UniRef90	UHGV-1491570_55	UniRef90_A6MAI4	156.0	0	Gp119	N/A
eggNOG-mapper	UHGV-1491570_55	768486.EHR_02665	160.0	0	N/A	N/A
structural_annotation	UHGV-1491570_55	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-1491570_56	phrog_1709	57.9	1.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-1491570_56	500632.CLONEX_01053	85.1	1.77e-20	N/A	N/A
PHROG	UHGV-1491570_57	phrog_434	46.8	0.00000000000047	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1491570_57	742738.HMPREF9460_00717	48.9	0.00000238	YqaJ viral recombinase family	N/A
COG	UHGV-1491570_57	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1491570_59	MF_01553,NF010188,COG5503	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1491570_60	PF09624,PF14263,MF_00791,NF038353,TIGR02588,COG4885	N/A	N/A	N/A	N/A
KOfam	UHGV-1491570_62	K07741	86.3	4.9e-25	antB; anti-repressor protein	N/A
PHROG	UHGV-1491570_62	phrog_373	131.4	7.5e-39	anti-repressor	transcription regulation
UniRef90	UHGV-1491570_62	UniRef90_UPI001C039A6C	171.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1491570_62	903814.ELI_3141	140.0	5.33e-38	AntA/AntB antirepressor	N/A
Pfam	UHGV-1491570_62	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1491570_62	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1491570_62	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1491570_62	PF10552,PF08346,TIGR02681,COG3561	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1491570_63	PF19807,NF041793,COG4877	N/A	N/A	N/A	N/A
KOfam	UHGV-1491570_65	K14060	146.6	1.90577e-43	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1491570_65	phrog_125	194.3	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1491570_65	UniRef90_A0A1H3G7A1	239.0	0	Site-specific DNA recombinase	N/A
eggNOG-mapper	UHGV-1491570_65	931626.Awo_c01430	230.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1491570_65	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1491570_65	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1491570_65	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1491570_67	K14415	325.9	0	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	N/A
PHROG	UHGV-1491570_67	phrog_1075	437.6	0	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1491570_67	UniRef90_UPI00067F3ABF	473.0	0	RNA-splicing ligase RtcB	N/A
eggNOG-mapper	UHGV-1491570_67	1211844.CBLM010000044_gene358	470.0	0	tRNA-splicing ligase RtcB	N/A
Pfam	UHGV-1491570_67	PF01139	N/A	N/A	tRNA-splicing ligase RtcB	RtcB
COG	UHGV-1491570_67	COG1690	N/A	N/A	RNA-splicing ligase RtcB, repairs tRNA damage	N/A
structural_annotation	UHGV-1491570_67	PF01139,MF_03144,NF007153,COG1690	N/A	N/A	N/A	N/A
PHROG	UHGV-1491570_68	phrog_38	176.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1491570_68	UniRef90_UPI000419A6BC	428.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1491570_68	1121866.AUGK01000003_gene1428	428.0	0	chromosome segregation	N/A
COG	UHGV-1491570_68	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1491570_68	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1491570_70	phrog_64	148.4	3.64338e-44	portal protein	head and packaging
UniRef90	UHGV-1491570_70	UniRef90_A0A371ILT4	325.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1491570_70	1121866.AUGK01000003_gene1429	275.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1491570_70	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1491570_70	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1491570_71	657322.FPR_23450	192.0	0	N/A	N/A
PHROG	UHGV-1491570_74	phrog_29	167.0	0	major head protein	head and packaging
UniRef90	UHGV-1491570_74	UniRef90_A0A2Z4QBB4	349.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-1491570_74	476272.RUMHYD_01946	234.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1491570_74	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1491570_74	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1491570_75	UniRef90_R6N215	81.6	7.46e-18	Phage QLRG family putative DNA packaging	N/A
structural_annotation	UHGV-1491570_75	TIGR01560	N/A	N/A	N/A	N/A