UHGV-1491636 (vOTU-149346)

Viral Genome: UHGV-1491636

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1491636
vOTU ID	vOTU-149346
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0198375
Associated BioSample	SAMEA2738026
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.17 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9765
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.28
Jumbo phage	No

Genome content
Genome length (bp)	27,690
GC content	47.97%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	43
CDS density	92%
Average CDS length (bps)	590.02
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 62.17)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1491636_1	phrog_9880	1019.2	0	N/A	unknown function
UniRef90	UHGV-1491636_1	UniRef90_A0A6J5LG12	934.0	0	LPD22 domain-containing protein	N/A
eggNOG-mapper	UHGV-1491636_1	194699.Q775D4_BPBPP	867.0	0	metallopeptidase activity	N/A
PHROG	UHGV-1491636_2	phrog_1640	71.5	1.1e-20	tail protein	tail
eggNOG-mapper	UHGV-1491636_2	557598.LHK_01555	117.0	1.16e-26	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-1491636_2	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
UniRef90	UHGV-1491636_3	UniRef90_G4CN29	271.0	0	Beta_helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1491636_3	641149.HMPREF9016_02029	246.0	0	Right handed beta helix region	N/A
Pfam	UHGV-1491636_3	PF13229	N/A	N/A	Right handed beta helix region	Beta_helix
NCBIFam	UHGV-1491636_3	TIGR03804.1	N/A	N/A	parallel beta-helix repeat protein	N/A
COG	UHGV-1491636_3	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-1491636_4	phrog_4237	63.5	2.1e-18	holin	lysis
UniRef90	UHGV-1491636_4	UniRef90_UPI00124C2542	52.8	0.000000485	HP1 family phage holin	N/A
eggNOG-mapper	UHGV-1491636_4	421052.F945_01880	56.2	0.00000000306	Bacteriophage holin family, superfamily II-like	N/A
Pfam	UHGV-1491636_4	PF16082	N/A	N/A	Bacteriophage holin family, superfamily II-like	Phage_holin_2_4
KOfam	UHGV-1491636_5	K01185	64.9	1.9e-18	E3.2.1.17; lysozyme [EC:3.2.1.17]	N/A
PHROG	UHGV-1491636_5	phrog_7	104.1	1.6e-30	endolysin	lysis
UniRef90	UHGV-1491636_5	UniRef90_A0A3N4MI00	229.0	0	Lysozyme	N/A
eggNOG-mapper	UHGV-1491636_5	1273707.L7TJR2_9CAUD	174.0	0	Phage lysozyme	N/A
Pfam	UHGV-1491636_5	PF00959	N/A	N/A	Phage lysozyme	Phage_lysozyme
structural_annotation	UHGV-1491636_5	MF_04110,COG3772	N/A	N/A	N/A	N/A
PHROG	UHGV-1491636_6	phrog_4004	79.1	3.2e-23	N/A	unknown function
structural_annotation	UHGV-1491636_6	PF21611,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
PHROG	UHGV-1491636_7	phrog_1152	76.2	3.7e-22	Rz-like spanin	lysis
UniRef90	UHGV-1491636_7	UniRef90_G4CGC0	73.9	0.0000000000000107	Phage associated protein	N/A
eggNOG-mapper	UHGV-1491636_7	546268.NEISUBOT_05195	114.0	2.15e-31	N/A	N/A
PHROG	UHGV-1491636_8	phrog_18666	168.1	0	N/A	unknown function
AcrCatalog	UHGV-1491636_8	cluster_11486	33.9	0.000176	NA	N/A
PHROG	UHGV-1491636_9	phrog_7950	90.8	7.5e-27	transcriptional repressor	transcription regulation
UniRef90	UHGV-1491636_9	UniRef90_UPI0003632E2C	115.0	1.39e-32	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1491636_9	1316932.MHH_c24530	60.8	0.0000000000154	N/A	N/A
structural_annotation	UHGV-1491636_9	PF20432,TIGR03070,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-1491636_10	phrog_5902	259.9	0	N/A	unknown function
UniRef90	UHGV-1491636_10	UniRef90_UPI00195D46D6	773.0	0	terminase	N/A
eggNOG-mapper	UHGV-1491636_10	1122963.AUHB01000029_gene4522	602.0	0	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	N/A
COG	UHGV-1491636_10	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1491636_10	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1491636_11	K07474	134.6	1.2e-39	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1491636_11	phrog_51	126.2	2.2e-37	terminase small subunit	head and packaging
UniRef90	UHGV-1491636_11	UniRef90_UPI0019567B2E	148.0	1.46996e-42	terminase small subunit	N/A
eggNOG-mapper	UHGV-1491636_11	395019.Bmul_1829	94.7	4.43e-22	Terminase small subunit	N/A
Pfam	UHGV-1491636_11	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1491636_11	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1491636_11	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1491636_12	phrog_99	172.7	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1491636_12	UniRef90_A0A1D3G1K2	330.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1491636_12	627192.SLG_22040	140.0	4.62e-40	PFAM Pathogenesis-related transcriptional factor and ERF protein	N/A
Pfam	UHGV-1491636_12	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1491636_12	PF13392,PF00847	N/A	N/A	N/A	N/A
PHROG	UHGV-1491636_13	phrog_72	89.9	2.9e-26	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1491636_13	UniRef90_A0A1D3E786	245.0	0	Phage associated protein	N/A
eggNOG-mapper	UHGV-1491636_13	546268.NEISUBOT_05157	125.0	1.6e-35	NinB protein	N/A
Pfam	UHGV-1491636_13	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-1491636_13	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1491636_14	phrog_131	108.4	7.4e-32	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1491636_14	UniRef90_UPI00066ED2E0	205.0	0	N/A	N/A
eggNOG-mapper	UHGV-1491636_14	280701.Q5QF84_9CAUD	117.0	4.25e-33	N/A	N/A
Pfam	UHGV-1491636_14	PF07102	N/A	N/A	Putative nuclease YbcO	YbcO
KOfam	UHGV-1491636_15	K01160	103.2	3.7e-30	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1491636_15	phrog_34	92.0	5.5e-27	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1491636_15	UniRef90_D3A7D7	203.0	0	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1491636_15	546268.NEISUBOT_05156	203.0	0	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1491636_15	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1491636_15	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1491636_15	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1491636_16	phrog_1035	43.7	0.0000000000079	endonuclease VII	DNA, RNA and nucleotide metabolism
KOfam	UHGV-1491636_18	K02315	180.0	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1491636_18	phrog_50	178.1	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1491636_18	UniRef90_UPI000300CCEA	489.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1491636_18	546268.NEISUBOT_05150	443.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-1491636_18	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1491636_18	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1491636_18	PF01695,MF_01919,NF005931,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1491636_19	phrog_18020	171.0	0	replication initiation O-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1491636_19	UniRef90_UPI000D319E3E	432.0	0	replication protein	N/A
eggNOG-mapper	UHGV-1491636_19	546268.NEISUBOT_05149	391.0	0	N/A	N/A
Pfam	UHGV-1491636_19	PF04492	N/A	N/A	Bacteriophage replication protein O	Phage_rep_O
structural_annotation	UHGV-1491636_19	PF04492,MF_01819,TIGR01610,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-1491636_20	phrog_4973	57.0	2.9e-16	N/A	unknown function
UniRef90	UHGV-1491636_20	UniRef90_UPI000E58217D	130.0	2.56e-38	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1491636_20	205914.HS_1403	48.1	0.00000271	Helix-turn-helix domain	N/A
Pfam	UHGV-1491636_20	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1491636_20	PF14090,NF040939	N/A	N/A	N/A	N/A
PHROG	UHGV-1491636_21	phrog_32732	87.6	5.1e-26	N/A	unknown function
UniRef90	UHGV-1491636_21	UniRef90_A0A013RRV0	112.0	3.21e-29	Gp49 domain protein	N/A
eggNOG-mapper	UHGV-1491636_21	749222.Nitsa_1194	97.8	6.67e-24	N/A	N/A
dbAPIS	UHGV-1491636_21	APIS052	N/A	N/A	N/A	N/A
PHROG	UHGV-1491636_22	phrog_35	46.8	0.00000000000051	transcriptional repressor	transcription regulation
UniRef90	UHGV-1491636_22	UniRef90_A0A5U2F6D8	55.1	0.0000000153	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1491636_22	741091.Rahaq_4541	52.8	0.000000023	Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	N/A
Pfam	UHGV-1491636_22	PF15943	N/A	N/A	Bacterial toxin YdaS	YdaS_toxin
COG	UHGV-1491636_22	COG4197	N/A	N/A	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	N/A
UniRef90	UHGV-1491636_23	UniRef90_UPI0003037E61	470.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1491636_23	1286093.C266_19173	71.2	0.00000000000797	Peptidase S24-like	N/A
Pfam	UHGV-1491636_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1491636_23	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
PHROG	UHGV-1491636_29	phrog_5715	240.4	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1491636_29	UniRef90_A0A1V0DUK7	327.0	0	Translocation protein TolB	N/A
eggNOG-mapper	UHGV-1491636_29	546268.NEISUBOT_05136	236.0	0	N/A	N/A
KOfam	UHGV-1491636_30	K07455	198.2	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1491636_30	phrog_148	213.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1491636_30	UniRef90_D3A7B8	339.0	0	Recombinase, phage RecT family	N/A
eggNOG-mapper	UHGV-1491636_30	546268.NEISUBOT_05137	339.0	0	RecT family	N/A
Pfam	UHGV-1491636_30	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1491636_30	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1491636_30	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1491636_30	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1491636_33	K03111	191.7	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1491636_33	phrog_44	159.2	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1491636_33	UniRef90_UPI000D386AF8	238.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1491636_33	546266.NEIMUCOT_04555	228.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1491636_33	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1491636_33	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1491636_33	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1491636_33	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1491636_33	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1491636_35	phrog_37882	109.7	1.4e-32	N/A	unknown function
UniRef90	UHGV-1491636_36	UniRef90_Q5F6E3	520.0	0	Phage associated protein	N/A
eggNOG-mapper	UHGV-1491636_36	546268.NEISUBOT_05131	63.9	0.0000000103	N/A	N/A
PHROG	UHGV-1491636_41	phrog_671	98.2	7.7e-29	nucleotide pyrophosphohydrolase	other
UniRef90	UHGV-1491636_41	UniRef90_UPI0008A3E1B7	272.0	0	nucleoside triphosphate pyrophosphohydrolase family protein	N/A
eggNOG-mapper	UHGV-1491636_41	546268.NEISUBOT_05130	162.0	0	Protein conserved in bacteria	N/A
COG	UHGV-1491636_41	COG4696	N/A	N/A	NTP pyrophosphatase, MazG superfamily	N/A
structural_annotation	UHGV-1491636_41	COG4696	N/A	N/A	N/A	N/A
PHROG	UHGV-1491636_42	phrog_4909	106.0	1.4e-31	N/A	unknown function
UniRef90	UHGV-1491636_42	UniRef90_A0A0A8F7V5	97.4	6.59e-25	Lactate dehydrogenase	N/A
KOfam	UHGV-1491636_43	K14059	82.4	8.1e-24	int; integrase	N/A
PHROG	UHGV-1491636_43	phrog_1	166.1	0	integrase	integration and excision
UniRef90	UHGV-1491636_43	UniRef90_A0A1F1SQB5	702.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1491636_43	1121352.JHZP01000004_gene1537	323.0	0	Arm DNA-binding domain	N/A
Pfam	UHGV-1491636_43	PF13356	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_3
Pfam	UHGV-1491636_43	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1491636_43	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1491636_43	PF00589,PF13356,PF14659,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A