UHGV-1494559 (vOTU-141236)

Viral Genome: UHGV-1494559

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1494559
vOTU ID	vOTU-141236
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0294617
Associated BioSample	SAMEA3664632
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.6 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9791
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.59
Jumbo phage	No

Genome content
Genome length (bp)	45,302
GC content	47.51%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	90
CDS density	86%
Average CDS length (bps)	434.03
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 78.6)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1494559_3	phrog_64	151.7	4.2039e-45	portal protein	head and packaging
UniRef90	UHGV-1494559_3	UniRef90_A0A371ILT4	330.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1494559_3	1121866.AUGK01000003_gene1429	273.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1494559_3	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1494559_3	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1494559_6	phrog_38	177.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1494559_6	UniRef90_UPI000419A6BC	429.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1494559_6	1121866.AUGK01000003_gene1428	429.0	0	chromosome segregation	N/A
COG	UHGV-1494559_6	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1494559_6	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
KOfam	UHGV-1494559_8	K14415	324.3	0	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	N/A
PHROG	UHGV-1494559_8	phrog_1075	437.8	0	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1494559_8	UniRef90_UPI00067F3ABF	478.0	0	RNA-splicing ligase RtcB	N/A
eggNOG-mapper	UHGV-1494559_8	1211844.CBLM010000044_gene358	474.0	0	tRNA-splicing ligase RtcB	N/A
Pfam	UHGV-1494559_8	PF01139	N/A	N/A	tRNA-splicing ligase RtcB	RtcB
COG	UHGV-1494559_8	COG1690	N/A	N/A	RNA-splicing ligase RtcB, repairs tRNA damage	N/A
structural_annotation	UHGV-1494559_8	PF01139,MF_03144,NF007153,COG1690	N/A	N/A	N/A	N/A
KOfam	UHGV-1494559_9	K14060	146.7	1.79366e-43	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1494559_9	phrog_125	174.1	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1494559_9	UniRef90_A0A3E2UAG1	231.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1494559_9	1280664.AUIX01000018_gene2067	214.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1494559_9	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1494559_9	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1494559_9	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1494559_11	PF01402,NF041793,COG3905	N/A	N/A	N/A	N/A
Pfam	UHGV-1494559_13	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-1494559_13	PF01402,NF041284,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-1494559_14	K07741	41.4	0.000000000039	antB; anti-repressor protein	N/A
PHROG	UHGV-1494559_14	phrog_63	139.8	2.09999e-41	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1494559_14	UniRef90_UPI0011277860	194.0	0	phage regulatory protein/antirepressor Ant	N/A
eggNOG-mapper	UHGV-1494559_14	947981.E9LUT0_9CAUD	171.0	0	DNA binding	N/A
Pfam	UHGV-1494559_14	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-1494559_14	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
NCBIFam	UHGV-1494559_14	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
structural_annotation	UHGV-1494559_14	PF09669,PF03374,TIGR02681,COG3646,COG3645	N/A	N/A	N/A	N/A
NCBIFam	UHGV-1494559_16	NF038353.1	N/A	N/A	FxLYD domain-containing protein	N/A
COG	UHGV-1494559_16	COG0515	N/A	N/A	Serine/threonine protein kinase	N/A
structural_annotation	UHGV-1494559_16	PF09624,PF14263,MF_00791,NF038353,TIGR02588,COG4885	N/A	N/A	N/A	N/A
PHROG	UHGV-1494559_21	phrog_434	43.4	0.0000000000051	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
COG	UHGV-1494559_21	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
PHROG	UHGV-1494559_22	phrog_186	46.6	0.00000000000054	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1494559_22	UniRef90_R9KQ65	96.7	1.5e-20	RepA_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1494559_22	397290.C810_00502	96.7	2.52e-21	Replication initiator protein A (RepA) N-terminus	N/A
Pfam	UHGV-1494559_22	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-1494559_22	COG1349	N/A	N/A	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family	N/A
structural_annotation	UHGV-1494559_22	PF06970,MF_01177,NF040642,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-1494559_25	K02314	210.0	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1494559_25	phrog_19	225.1	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1494559_25	UniRef90_A0A564SBR1	432.0	0	Replicative DNA helicase	N/A
eggNOG-mapper	UHGV-1494559_25	1203606.HMPREF1526_01325	167.0	1.82169e-44	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1494559_25	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1494559_25	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1494559_25	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
Pfam	UHGV-1494559_26	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1494559_26	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1494559_27	K19779	41.3	0.000000000024	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-1494559_27	phrog_599	49.8	0.000000000000079	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-1494559_27	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1494559_27	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1494559_27	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1494559_27	PF14354,TIGR03655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1494559_32	NF041588	N/A	N/A	N/A	N/A
KOfam	UHGV-1494559_41	K17080	76.8	3.8e-23	PHB1; prohibitin 1	N/A
PHROG	UHGV-1494559_41	phrog_200	152.4	2.8026e-45	lipoprotein	other
UniRef90	UHGV-1494559_41	UniRef90_D4KCF4	383.0	0	Membrane protease subunits, stomatin/prohibitin homologs	N/A
eggNOG-mapper	UHGV-1494559_41	657322.FPR_23460	383.0	0	prohibitin homologues	N/A
Pfam	UHGV-1494559_41	PF01145	N/A	N/A	SPFH domain / Band 7 family	Band_7
COG	UHGV-1494559_41	COG0330	N/A	N/A	Regulator of protease activity HflC, stomatin/prohibitin superfamily	N/A
structural_annotation	UHGV-1494559_41	PF01145,MF_01562,NF008181,COG0330	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1494559_42	PF16677	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1494559_44	MF_00085,NF003076,COG0231	N/A	N/A	N/A	N/A
UniRef90	UHGV-1494559_47	UniRef90_UPI0006DCB293	79.3	2.61e-17	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1494559_47	411490.ANACAC_02386	74.3	0.0000000000000076	Phosphoadenosine phosphosulfate reductase	N/A
COG	UHGV-1494559_47	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
KOfam	UHGV-1494559_48	K00390	112.2	3.6e-33	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1494559_48	phrog_424	121.9	5.2e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1494559_48	UniRef90_A0A1Y4LU27	305.0	0	Adenylyl-sulfate reductase	N/A
eggNOG-mapper	UHGV-1494559_48	1408437.JNJN01000032_gene2312	278.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1494559_48	BrxP_00001	79.8	9.5e-24	BrxP	BREX
Pfam	UHGV-1494559_48	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1494559_48	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1494559_48	PF01507,MF_00064,TIGR02039,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1494559_50	phrog_4856	43.1	0.0000000000073	nucleoside triphosphate pyrophosphohydrolase	other
structural_annotation	UHGV-1494559_50	PF11998,COG5420	N/A	N/A	N/A	N/A
PHROG	UHGV-1494559_52	phrog_843	59.8	2.1e-17	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1494559_52	UniRef90_UPI000C78AB6D	114.0	2.32e-29	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1494559_52	929506.CbC4_1203	106.0	1.76e-26	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-1494559_52	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-1494559_54	phrog_18107	70.0	4.9e-20	N/A	unknown function
UniRef90	UHGV-1494559_54	UniRef90_UPI00058F46CC	87.0	4.91e-18	N/A	N/A
eggNOG-mapper	UHGV-1494559_54	903814.ELI_1274	148.0	5.95552e-43	N/A	N/A
structural_annotation	UHGV-1494559_54	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1494559_55	phrog_2872	239.6	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1494559_55	UniRef90_A0A8J6JIF1	270.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1494559_55	754027.HMPREF9554_00709	215.0	0	N/A	N/A
Pfam	UHGV-1494559_55	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1494559_55	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1494559_56	phrog_38771	64.1	1.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-1494559_57	272623.L157023	48.5	0.00000763	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	N/A
COG	UHGV-1494559_57	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-1494559_57	PF04606,NF007241,COG3478	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1494559_58	PF14143	N/A	N/A	N/A	N/A
Pfam	UHGV-1494559_59	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1494559_59	PF13443,TIGR02684,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1494559_62	760568.Desku_0919	99.4	4.45e-23	N/A	N/A
structural_annotation	UHGV-1494559_62	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1494559_64	TIGR03826	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1494559_65	PF10922	N/A	N/A	N/A	N/A
KOfam	UHGV-1494559_66	K07741	127.4	2.6e-37	antB; anti-repressor protein	N/A
PHROG	UHGV-1494559_66	phrog_130	272.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1494559_66	UniRef90_R5ANG2	309.0	0	Phage antirepressor protein	N/A
eggNOG-mapper	UHGV-1494559_66	1589751.A0A0C5AEJ9_9CAUD	283.0	0	DNA binding	N/A
Pfam	UHGV-1494559_66	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1494559_66	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-1494559_66	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-1494559_67	UniRef90_A0A7X1LWA7	80.5	2.17e-18	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1494559_67	428125.CLOLEP_02737	59.7	0.0000000000581	N/A	N/A
structural_annotation	UHGV-1494559_67	TIGR03070	N/A	N/A	N/A	N/A
PHROG	UHGV-1494559_68	phrog_8	53.6	0.0000000000000052	transcriptional regulator	transcription regulation
UniRef90	UHGV-1494559_68	UniRef90_A0A373XY93	92.4	6.72e-22	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1494559_68	665956.HMPREF1032_02614	64.7	0.00000000000611	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1494559_68	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1494559_68	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1494559_72	UniRef90_A0A2A7AM70	189.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1494559_72	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1494559_72	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1494559_72	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1494559_73	phrog_4402	109.3	3.1e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1494559_73	UniRef90_A0A0H5Q331	253.0	0	Rep_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1494559_73	999413.HMPREF1094_04438	142.0	1.33e-36	Initiator Replication protein	N/A
Pfam	UHGV-1494559_73	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-1494559_73	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-1494559_73	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-1494559_73	PF01051,PF21205,NF010305,COG5527	N/A	N/A	N/A	N/A
PHROG	UHGV-1494559_74	phrog_7704	43.8	0.0000000000041	N/A	unknown function
Pfam	UHGV-1494559_74	PF04448	N/A	N/A	N/A	DUF551
KOfam	UHGV-1494559_75	K03496	232.2	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1494559_75	phrog_164	157.9	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1494559_75	UniRef90_A0A1C6BS15	212.0	0	Sporulation initiation inhibitor protein soj	N/A
eggNOG-mapper	UHGV-1494559_75	1408423.JHYA01000021_gene392	188.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-1494559_75	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1494559_75	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1494559_75	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1494559_77	PF07878	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1494559_82	1408437.JNJN01000043_gene801	86.3	3.99e-18	N/A	N/A
eggNOG-mapper	UHGV-1494559_83	1408437.JNJN01000043_gene802	116.0	4.25e-32	N/A	N/A
PHROG	UHGV-1494559_84	phrog_16490	48.4	0.00000000000014	N/A	unknown function
eggNOG-mapper	UHGV-1494559_84	1226322.HMPREF1545_00076	82.0	3.36e-18	N/A	N/A
PHROG	UHGV-1494559_85	phrog_13879	179.6	0	N/A	unknown function
eggNOG-mapper	UHGV-1494559_85	1122919.KB905559_gene1344	137.0	9.59e-34	N/A	N/A
structural_annotation	UHGV-1494559_85	PF19318,PF16466,MF_00813,NF010371,COG4266	N/A	N/A	N/A	N/A
PHROG	UHGV-1494559_86	phrog_1194	88.4	5.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-1494559_86	665956.HMPREF1032_03629	50.8	0.00000349	N/A	N/A
Pfam	UHGV-1494559_86	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1494559_86	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1494559_87	phrog_1535	181.2	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1494559_87	1121866.AUGK01000003_gene1437	204.0	0	phage tail tape measure protein	N/A
COG	UHGV-1494559_87	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
eggNOG-mapper	UHGV-1494559_88	1121333.JMLH01000047_gene1011	74.7	0.00000000000000307	N/A	N/A
UniRef90	UHGV-1494559_89	UniRef90_A0A847YX95	71.2	0.000000000000102	N/A	N/A
eggNOG-mapper	UHGV-1494559_89	1123263.AUKY01000015_gene1618	62.0	0.0000000000689	N/A	N/A
Pfam	UHGV-1494559_89	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1494559_89	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1494559_90	1232453.BAIF02000058_gene1634	51.2	0.00000133	N/A	N/A
structural_annotation	UHGV-1494559_90	PF16460,COG5437	N/A	N/A	N/A	N/A