UHGV-1494764 (vOTU-008997)

Viral Genome: UHGV-1494764

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1494764
vOTU ID	vOTU-008997
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0287713
Associated BioSample	SAMEA2154015
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9806
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.38
Jumbo phage	No

Genome content
Genome length (bp)	43,759
GC content	50.37%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	64
CDS density	95%
Average CDS length (bps)	650.72
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1494764_2	K14059	152.9	2.8026e-45	int; integrase	N/A
PHROG	UHGV-1494764_2	phrog_1	153.3	1.4013e-45	integrase	integration and excision
UniRef90	UHGV-1494764_2	UniRef90_R6I1Y0	331.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-1494764_2	1384066.JAGT01000001_gene153	114.0	3.63e-26	Phage integrase family	N/A
Pfam	UHGV-1494764_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1494764_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1494764_2	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1494764_3	UniRef90_A0A8D9UHA6	67.4	0.000000000158	Helix-turn-helix XRE-family like protein	N/A
COG	UHGV-1494764_3	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
structural_annotation	UHGV-1494764_3	PF13443,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1494764_5	UniRef90_A0A2L0I162	74.7	0.0000000000276	J domain-containing protein	N/A
eggNOG-mapper	UHGV-1494764_5	1331660.L313_0183	70.5	0.000000000188	DnaJ-class molecular chaperone with C-terminal Zn finger domain	N/A
COG	UHGV-1494764_5	COG0484	N/A	N/A	DnaJ-class molecular chaperone with C-terminal Zn finger domain	N/A
UniRef90	UHGV-1494764_6	UniRef90_A0A8D9PDV2	55.8	0.0000000137	DNA methyl phosphotriester repair domain protein	N/A
eggNOG-mapper	UHGV-1494764_6	1392493.JIAB01000001_gene1404	62.4	0.00000000011	repeat protein	N/A
COG	UHGV-1494764_6	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
UniRef90	UHGV-1494764_9	UniRef90_A0A1V0QCF9	85.5	1.08e-18	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1494764_9	1226322.HMPREF1545_00148	72.4	0.0000000000000273	Transcriptional	N/A
Pfam	UHGV-1494764_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1494764_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-1494764_10	UniRef90_UPI0018995761	69.3	0.0000000000000405	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-1494764_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1494764_10	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1494764_11	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1494764_13	phrog_253	109.1	3.9e-32	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1494764_13	UniRef90_A0A1C5N4H2	109.0	1.66e-27	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-1494764_13	1410670.JHXF01000015_gene2268	90.5	7.36e-21	Siphovirus Gp157	N/A
Pfam	UHGV-1494764_13	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1494764_13	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1494764_14	phrog_7838	119.4	3.2e-35	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1494764_14	UniRef90_A0A8D9UGW3	189.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-1494764_14	742767.HMPREF9456_02052	154.0	1.96182e-44	N/A	N/A
structural_annotation	UHGV-1494764_14	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-1494764_15	phrog_72	45.1	0.00000000000071	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1494764_15	UniRef90_A0A2Z4Q9W9	104.0	2.63e-25	NinB	N/A
eggNOG-mapper	UHGV-1494764_15	445972.ANACOL_01825	78.6	5.98e-16	N/A	N/A
structural_annotation	UHGV-1494764_15	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1494764_16	phrog_7566	89.6	2.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-1494764_16	508419.F8J187_9CAUD	97.4	2.53e-25	N/A	N/A
KOfam	UHGV-1494764_17	K03111	119.5	4.6e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1494764_17	phrog_44	125.2	5e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1494764_17	UniRef90_R6IDK3	153.0	2.8026e-45	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1494764_17	1007096.BAGW01000023_gene151	134.0	8.73e-39	Single-strand binding protein family	N/A
Pfam	UHGV-1494764_17	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1494764_17	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1494764_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1494764_17	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1494764_17	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1494764_18	phrog_16304	64.0	2.6e-18	N/A	unknown function
UniRef90	UHGV-1494764_18	UniRef90_A0A316T7M6	105.0	2.2e-24	N/A	N/A
eggNOG-mapper	UHGV-1494764_18	1345695.CLSA_c35700	57.4	0.00000096	DnaD domain protein	N/A
Pfam	UHGV-1494764_18	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1494764_18	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1494764_18	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1494764_19	K24213	46.1	0.00000000000055	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-1494764_19	phrog_4433	69.1	6.8e-32	N/A	unknown function
eggNOG-mapper	UHGV-1494764_19	886882.PPSC2_p0363	120.0	5.54e-29	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1494764_19	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1494764_19	NF007410	N/A	N/A	N/A	N/A
KOfam	UHGV-1494764_20	K01449	51.6	0.000000000000016	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1494764_20	phrog_30550	150.8	5.60519e-45	N/A	unknown function
UniRef90	UHGV-1494764_20	UniRef90_R6CIF0	127.0	3.43e-34	Hydrolase_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1494764_20	1519439.JPJG01000077_gene920	112.0	1.07e-29	Cell Wall Hydrolase	N/A
Pfam	UHGV-1494764_20	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
structural_annotation	UHGV-1494764_20	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A
PHROG	UHGV-1494764_21	phrog_954	116.3	1.6e-34	DNA methyltransferase	other
UniRef90	UHGV-1494764_21	UniRef90_A0A810Q0N4	166.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1494764_21	411461.DORFOR_01143	166.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-1494764_21	MTase_II_00074	111.8	9.9e-33	Type II methyltransferase	RM
Pfam	UHGV-1494764_21	PF04448	N/A	N/A	N/A	DUF551
COG	UHGV-1494764_21	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-1494764_21	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
PHROG	UHGV-1494764_22	phrog_38832	74.8	2.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-1494764_22	665956.HMPREF1032_00143	77.0	0.00000000000000237	N/A	N/A
Pfam	UHGV-1494764_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1494764_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1494764_28	PF13560,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1494764_30	phrog_2245	96.0	3.8e-28	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-1494764_30	428125.CLOLEP_01814	98.6	4.17e-24	COG NOG14118 non supervised orthologous group	N/A
PHROG	UHGV-1494764_34	phrog_4973	55.3	0.0000000000000011	N/A	unknown function
UniRef90	UHGV-1494764_34	UniRef90_UPI001D0904CC	70.1	0.0000000000000298	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1494764_34	935261.JAGL01000009_gene1175	52.4	0.0000000391	Helix-turn-helix domain	N/A
Pfam	UHGV-1494764_34	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1494764_34	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
UniRef90	UHGV-1494764_36	UniRef90_A0A3C0NNN3	58.5	0.000000116	HTH psq-type domain-containing protein	N/A
KOfam	UHGV-1494764_37	K06909	125.1	7.4e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1494764_37	phrog_979	140.1	7.00649e-43	terminase large subunit	head and packaging
UniRef90	UHGV-1494764_37	UniRef90_A0A3C0NMI6	606.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-1494764_37	1410650.JHWL01000003_gene2834	522.0	0	N/A	N/A
Pfam	UHGV-1494764_37	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1494764_37	TIGR01445.1	N/A	N/A	intein N-terminal splicing region	N/A
COG	UHGV-1494764_37	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1494764_37	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1494764_38	phrog_15471	120.7	1.1e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1494764_38	UniRef90_A0A396QEH1	185.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1494764_38	1235800.C819_00490	119.0	2.71e-31	HNH endonuclease	N/A
Pfam	UHGV-1494764_38	PF13392	N/A	N/A	HNH endonuclease	HNH_3
PHROG	UHGV-1494764_39	phrog_28563	49.1	0.000000000000081	N/A	unknown function
UniRef90	UHGV-1494764_39	UniRef90_A0A7G9GB56	95.9	2.55e-24	INTEIN_C_TER domain-containing protein	N/A
NCBIFam	UHGV-1494764_39	TIGR01443.1	N/A	N/A	intein C-terminal splicing region	N/A
COG	UHGV-1494764_39	COG0587	N/A	N/A	DNA polymerase III, alpha subunit	N/A
PHROG	UHGV-1494764_40	phrog_156	293.3	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1494764_40	1410650.JHWL01000003_gene2833	496.0	0	N/A	N/A
structural_annotation	UHGV-1494764_40	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-1494764_41	K07584	59.5	6.6e-17	N/A	N/A
PHROG	UHGV-1494764_41	phrog_4478	64.2	1.5e-18	peptidase	other
UniRef90	UHGV-1494764_41	UniRef90_A0A6N9P4C8	54.3	0.000000339	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-1494764_41	1123009.AUID01000013_gene1737	48.9	0.00000761	Cysteine protease Prp	N/A
Pfam	UHGV-1494764_41	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-1494764_41	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1494764_41	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1494764_42	phrog_13908	175.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1494764_42	1410650.JHWL01000003_gene2831	95.9	9.12e-20	N/A	N/A
PHROG	UHGV-1494764_43	phrog_1357	199.4	0	major head protein	head and packaging
UniRef90	UHGV-1494764_43	UniRef90_A0A2V2CFL5	534.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1494764_43	1410650.JHWL01000003_gene2830	265.0	0	N/A	N/A
NCBIFam	UHGV-1494764_43	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1494764_43	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1494764_44	phrog_15239	40.2	0.000000000052	N/A	unknown function
PHROG	UHGV-1494764_45	phrog_12105	109.3	2.5e-32	N/A	unknown function
eggNOG-mapper	UHGV-1494764_45	1519439.JPJG01000060_gene1891	67.8	0.000000000000757	N/A	N/A
PHROG	UHGV-1494764_46	phrog_511	208.7	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1494764_46	1410650.JHWL01000003_gene2827	257.0	0	N/A	N/A
structural_annotation	UHGV-1494764_46	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1494764_48	1410650.JHWL01000003_gene2815	91.7	6.41e-17	N/A	N/A
PHROG	UHGV-1494764_49	phrog_22978	472.4	0	N/A	unknown function
UniRef90	UHGV-1494764_49	UniRef90_A0A1Y4WLF7	649.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-1494764_49	1410650.JHWL01000003_gene2814	517.0	0	N/A	N/A
Pfam	UHGV-1494764_49	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
Pfam	UHGV-1494764_49	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UniRef90	UHGV-1494764_51	UniRef90_A0A6N8HV77	140.0	3.86e-33	N/A	N/A
eggNOG-mapper	UHGV-1494764_51	1203606.HMPREF1526_01356	61.6	0.000000168	cell wall binding repeat	N/A
Pfam	UHGV-1494764_51	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-1494764_51	COG2247	N/A	N/A	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	N/A
structural_annotation	UHGV-1494764_51	PF19789	N/A	N/A	N/A	N/A
UniRef90	UHGV-1494764_53	UniRef90_R6I1X1	174.0	0	COPII coat assembly protein SEC16 (Protein transport protein SEC16)	N/A
eggNOG-mapper	UHGV-1494764_53	1203606.HMPREF1526_01926	85.5	2.99e-18	N/A	N/A
PHROG	UHGV-1494764_54	phrog_21357	54.7	0.000000000000001	endolysin	lysis
UniRef90	UHGV-1494764_54	UniRef90_UPI001BB47323	88.6	9.11e-18	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-1494764_54	1007096.BAGW01000022_gene2648	74.3	0.000000000000331	CHAP domain	N/A
Pfam	UHGV-1494764_54	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-1494764_54	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1494764_54	TIGR02594,COG3738	N/A	N/A	N/A	N/A
PHROG	UHGV-1494764_55	phrog_1863	65.6	4.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-1494764_55	748224.HMPREF9436_01412	93.2	5.52e-24	N/A	N/A
PHROG	UHGV-1494764_56	phrog_10091	110.9	8.1e-33	holin	lysis
UniRef90	UHGV-1494764_56	UniRef90_A0A1Y4RHF4	130.0	5.3e-38	Phage holin	N/A
eggNOG-mapper	UHGV-1494764_56	445975.COLSTE_02144	115.0	1.58e-32	Bacteriophage holin	N/A
Pfam	UHGV-1494764_56	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1494764_56	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1494764_56	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1494764_56	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1494764_57	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1494764_58	phrog_3754	101.0	1.1e-29	N/A	unknown function
eggNOG-mapper	UHGV-1494764_58	476272.RUMHYD_01764	146.0	7.42688e-44	N/A	N/A
PHROG	UHGV-1494764_59	phrog_21718	92.5	4.2e-27	N/A	unknown function
UniRef90	UHGV-1494764_59	UniRef90_A0A285PT36	54.7	0.00000106	Consensus disorder prediction	N/A
eggNOG-mapper	UHGV-1494764_59	397290.C810_05210	92.8	4.33e-22	N/A	N/A
PHROG	UHGV-1494764_60	phrog_22984	76.8	2.3e-22	N/A	unknown function
PHROG	UHGV-1494764_61	phrog_16490	151.4	7.00649e-45	N/A	unknown function
eggNOG-mapper	UHGV-1494764_61	1408437.JNJN01000043_gene803	144.0	8.78999e-40	N/A	N/A
PHROG	UHGV-1494764_63	phrog_20016	191.3	0	N/A	unknown function
UniRef90	UHGV-1494764_63	UniRef90_A0A285PT46	201.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1494764_63	1226322.HMPREF1545_00077	166.0	0	N/A	N/A
structural_annotation	UHGV-1494764_63	PF18573,NF033147	N/A	N/A	N/A	N/A