UHGV-1495079 (vOTU-013273)

Viral Genome: UHGV-1495079

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1495079
vOTU ID	vOTU-013273
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0295542
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9709
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.14
Jumbo phage	No

Genome content
Genome length (bp)	45,516
GC content	32.85%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	75
CDS density	87%
Average CDS length (bps)	528.96
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1495079_1	K01447	60.7	2.9e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1495079_1	phrog_7698	153.2	2.8026e-45	endolysin	lysis
UniRef90	UHGV-1495079_1	UniRef90_UPI001D0AA402	547.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1495079_1	1125712.HMPREF1316_2631	145.0	2.41e-40	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1495079_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1495079_1	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1495079_1	COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1495079_3	phrog_443	52.1	0.000000000000017	holin	lysis
UniRef90	UHGV-1495079_3	UniRef90_A0A2U2ELA1	78.2	1.3e-17	Membrane protein	N/A
eggNOG-mapper	UHGV-1495079_3	476272.RUMHYD_01759	84.3	1.09e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1495079_3	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1495079_3	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-1495079_5	phrog_20016	68.0	1.1e-19	N/A	unknown function
UniRef90	UHGV-1495079_5	UniRef90_A0A395WF88	266.0	0	BclA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1495079_5	1226322.HMPREF1545_00077	60.8	0.000000000822	N/A	N/A
Pfam	UHGV-1495079_5	PF18573	N/A	N/A	BclA C-terminal domain	BclA_C
structural_annotation	UHGV-1495079_5	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-1495079_6	UniRef90_A0A8F0WFQ8	68.6	0.000000000266	Outer capsid protein/viral fiber	N/A
eggNOG-mapper	UHGV-1495079_6	476272.RUMHYD_01770	111.0	1.39e-27	N/A	N/A
structural_annotation	UHGV-1495079_13	PF16407,TIGR02657,COG3794	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1495079_14	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1495079_15	PF10651,COG5513	N/A	N/A	N/A	N/A
PHROG	UHGV-1495079_16	phrog_1067	46.5	7.3e-23	minor head protein	head and packaging
eggNOG-mapper	UHGV-1495079_16	1232446.BAIE02000002_gene836	60.8	0.000000744	Phage minor structural protein	N/A
Pfam	UHGV-1495079_16	PF14200	N/A	N/A	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
NCBIFam	UHGV-1495079_16	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1495079_16	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1495079_16	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1495079_17	phrog_33	52.7	0.00000000000001	distal tail protein Dit	tail
UniRef90	UHGV-1495079_17	UniRef90_A0A1C6JHE5	62.8	0.000000041	Phage-related protein	N/A
Pfam	UHGV-1495079_17	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-1495079_17	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1495079_17	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1495079_17	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1495079_18	phrog_13339	322.6	0	tail length tape measure protein	tail
UniRef90	UHGV-1495079_18	UniRef90_A0A395WD11	1885.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1495079_18	1117379.BABA_17397	250.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1495079_18	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1495079_18	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1495079_18	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1495079_18	PF10145,TIGR01760,TIGR02971,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1495079_19	phrog_709	45.3	0.0000000000014	N/A	unknown function
structural_annotation	UHGV-1495079_19	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1495079_20	phrog_88	141.8	3.59994e-42	major tail protein	tail
UniRef90	UHGV-1495079_20	UniRef90_A0A395WA58	390.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1495079_20	1033744.CAEL01000029_gene1276	157.0	1.4013e-45	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1495079_20	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1495079_20	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1495079_21	UniRef90_A0A374RUJ8	141.0	1.44e-40	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1495079_21	86416.Clopa_0344	59.7	0.00000000164	N/A	N/A
structural_annotation	UHGV-1495079_21	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1495079_22	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-1495079_23	phrog_1951	71.9	6.2e-21	head-tail adaptor	connector
UniRef90	UHGV-1495079_23	UniRef90_A0A395WC07	221.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-1495079_23	1243664.CAVL020000054_gene3020	60.1	0.000000000276	head-tail adaptor	N/A
NCBIFam	UHGV-1495079_23	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-1495079_23	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1495079_23	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1495079_24	phrog_5223	46.9	0.00000000000037	neck protein	connector
UniRef90	UHGV-1495079_24	UniRef90_A0A374RXD1	77.8	1.02e-16	DNA-packaging protein	N/A
structural_annotation	UHGV-1495079_24	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1495079_25	phrog_10	82.0	8.2e-24	major head protein	head and packaging
UniRef90	UHGV-1495079_25	UniRef90_A0A395WF70	793.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1495079_25	1536774.H70357_10630	163.0	8.37976e-43	Phage capsid family	N/A
Pfam	UHGV-1495079_25	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1495079_25	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1495079_25	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1495079_25	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1495079_26	K06904	88.5	9.5e-26	N/A	N/A
PHROG	UHGV-1495079_26	phrog_80	118.9	6.5e-35	head maturation protease	head and packaging
UniRef90	UHGV-1495079_26	UniRef90_A0A413UET6	351.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1495079_26	445975.COLSTE_02163	174.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-1495079_26	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1495079_26	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1495079_26	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1495079_26	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1495079_27	phrog_12	108.0	6.6e-32	portal protein	head and packaging
UniRef90	UHGV-1495079_27	UniRef90_A0A395W9X2	812.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1495079_27	1203606.HMPREF1526_01337	290.0	0	Portal protein	N/A
Pfam	UHGV-1495079_27	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1495079_27	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1495079_27	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1495079_28	phrog_9	308.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1495079_28	UniRef90_A0A395WD03	1124.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1495079_28	742740.HMPREF9474_04307	549.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-1495079_28	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1495079_28	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1495079_28	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1495079_28	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1495079_29	phrog_361	74.5	1.2e-21	terminase small subunit	head and packaging
UniRef90	UHGV-1495079_29	UniRef90_A0A1C6H6I9	80.1	6.43e-17	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1495079_29	1329516.JPST01000017_gene431	50.1	0.00000474	Phage terminase, small subunit	N/A
Pfam	UHGV-1495079_29	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-1495079_29	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1495079_29	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1495079_30	phrog_119	59.2	6.9e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1495079_30	UniRef90_A0A395WA48	265.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1495079_30	1211814.CAPG01000074_gene3460	67.0	0.000000000000955	HNH endonuclease	N/A
Pfam	UHGV-1495079_30	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1495079_30	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-1495079_31	UniRef90_A0A374RVC6	124.0	4e-36	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1495079_31	1145276.T479_12115	50.1	0.000000254	Helix-turn-helix domain	N/A
structural_annotation	UHGV-1495079_31	PF13560,TIGR02612,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1495079_32	phrog_2059	102.7	4.4e-30	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1495079_32	UniRef90_A0A395WEU5	282.0	0	Antirestriction protein ArdA	N/A
eggNOG-mapper	UHGV-1495079_32	546269.HMPREF0389_00246	103.0	1.85e-23	N/A	N/A
Pfam	UHGV-1495079_32	PF07275	N/A	N/A	Antirestriction protein (ArdA)	ArdA
dbAPIS	UHGV-1495079_32	APIS003	N/A	N/A	DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes.	N/A
COG	UHGV-1495079_32	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
structural_annotation	UHGV-1495079_32	PF07275,COG4734	N/A	N/A	N/A	N/A
COG	UHGV-1495079_34	COG4842	N/A	N/A	Secreted virulence factor YukE/EsxA, WXG100 family	N/A
PHROG	UHGV-1495079_38	phrog_4525	65.2	1.2e-18	N/A	unknown function
PHROG	UHGV-1495079_39	phrog_2316	41.5	0.000000000023	N/A	unknown function
UniRef90	UHGV-1495079_39	UniRef90_A0A3E4YBW5	125.0	1.48e-35	N/A	N/A
eggNOG-mapper	UHGV-1495079_39	1280676.AUJO01000024_gene3262	63.9	0.00000000000428	N/A	N/A
structural_annotation	UHGV-1495079_39	PF16475,MF_00436,NF033216,COG1923	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1495079_40	PF10879	N/A	N/A	N/A	N/A
UniRef90	UHGV-1495079_42	UniRef90_A0A413UEX6	290.0	0	N/A	N/A
Pfam	UHGV-1495079_42	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1495079_42	PF07374,NF008895	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1495079_45	PF11061	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1495079_47	PF01104,NF041014	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1495079_49	PF01104,NF041014	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1495079_55	PF16789	N/A	N/A	N/A	N/A
PHROG	UHGV-1495079_57	phrog_7711	129.2	1.5e-38	N/A	unknown function
UniRef90	UHGV-1495079_57	UniRef90_UPI001C38CAD2	395.0	0	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-1495079_57	1226322.HMPREF1545_00031	90.9	1.04e-20	N/A	N/A
Pfam	UHGV-1495079_57	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1495079_60	PF11184	N/A	N/A	N/A	N/A
PHROG	UHGV-1495079_61	phrog_774	65.2	8.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-1495079_61	397290.C810_05225	66.2	0.00000000000358	N/A	N/A
KOfam	UHGV-1495079_62	K00390	79.9	2e-23	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1495079_62	phrog_424	104.3	1.1e-30	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1495079_62	UniRef90_A0A374RXA8	330.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-1495079_62	1410650.JHWL01000037_gene595	243.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
PADLOC	UHGV-1495079_62	BrxP_00001	41.5	0.000000000000007	BrxP	BREX
Pfam	UHGV-1495079_62	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1495079_62	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1495079_62	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1495079_65	K02315	120.6	1.7e-35	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1495079_65	phrog_50	107.8	1.2e-31	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1495079_65	UniRef90_A0A395WER8	544.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-1495079_65	1232446.BAIE02000011_gene1611	133.0	6.28e-35	N/A	N/A
Pfam	UHGV-1495079_65	PF00308	N/A	N/A	Bacterial dnaA protein	Bac_DnaA
COG	UHGV-1495079_65	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1495079_65	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1495079_66	phrog_428	146.2	2.70451e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1495079_66	UniRef90_A0A395WBX6	512.0	0	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1495079_66	279808.SH2379	147.0	3.17e-40	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-1495079_66	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-1495079_66	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-1495079_66	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1495079_66	PF09524,PF08679,MF_01909,TIGR02220,NF040939,COG1675	N/A	N/A	N/A	N/A
KOfam	UHGV-1495079_68	K04763	137.1	1.8e-40	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1495079_68	phrog_1	123.1	2.9e-36	integrase	integration and excision
UniRef90	UHGV-1495079_68	UniRef90_A0A395W9T7	568.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1495079_68	908340.HMPREF9406_2589	227.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1495079_68	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1495079_68	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1495079_68	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1495079_72	K18830	65.1	1.5e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1495079_72	phrog_8	49.2	0.000000000000089	transcriptional regulator	transcription regulation
UniRef90	UHGV-1495079_72	UniRef90_A0A413CSI3	267.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1495079_72	999413.HMPREF1094_02045	103.0	1.16e-26	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1495079_72	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1495079_72	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1495079_72	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1495079_73	phrog_4980	126.1	3.3e-37	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-1495079_73	658086.HMPREF0994_06731	85.5	5.78e-16	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-1495079_73	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-1495079_73	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1495079_73	PF18933,PF02631,MF_02248,MF_01114,NF008627,NF001062,COG5435,COG2137	N/A	N/A	N/A	N/A
KOfam	UHGV-1495079_75	K14059	195.5	0	int; integrase	N/A
PHROG	UHGV-1495079_75	phrog_1	177.0	0	integrase	integration and excision
UniRef90	UHGV-1495079_75	UniRef90_A0A395WBW7	741.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1495079_75	1235796.C815_00955	299.0	0	DNA integration	N/A
Pfam	UHGV-1495079_75	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1495079_75	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1495079_75	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A