UHGV-1495725 (vOTU-013605)

Viral Genome: UHGV-1495725

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1495725
vOTU ID	vOTU-013605
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0294948
Associated BioSample	SAMN02333956
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.36 (High-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9789
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.78
Jumbo phage	No

Genome content
Genome length (bp)	45,377
GC content	45.84%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	62
CDS density	91%
Average CDS length (bps)	669.29
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 97.36)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1495725_1	UniRef90_A0A7M1RS47	88.6	1.65e-19	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1495725_1	1378168.N510_03079	57.0	0.00000014	N/A	N/A
structural_annotation	UHGV-1495725_2	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-1495725_7	UniRef90_A0A316S6W0	99.8	7.21e-26	HTH luxR-type domain-containing protein	N/A
Pfam	UHGV-1495725_7	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-1495725_7	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-1495725_7	PF08281,MF_00674,NF001073,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1495725_9	1392502.JNIO01000008_gene1280	232.0	0	N/A	N/A
structural_annotation	UHGV-1495725_9	PF21277	N/A	N/A	N/A	N/A
PHROG	UHGV-1495725_11	phrog_4105	83.7	1.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-1495725_11	33035.JPJF01000043_gene996	78.2	4.34e-17	N/A	N/A
PHROG	UHGV-1495725_12	phrog_1807	83.1	3.3e-24	tail fiber protein	tail
UniRef90	UHGV-1495725_12	UniRef90_A0A1Q6R2G9	164.0	0	N/A	N/A
eggNOG-mapper	UHGV-1495725_12	1286631.X805_38770	64.3	0.000000000842	N/A	N/A
Pfam	UHGV-1495725_12	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-1495725_12	PF14301	N/A	N/A	N/A	N/A
PHROG	UHGV-1495725_13	phrog_19618	73.4	2.3e-21	tail collar protein	tail
UniRef90	UHGV-1495725_13	UniRef90_A0A354WRB2	141.0	2.67e-38	Collar domain-containing protein	N/A
eggNOG-mapper	UHGV-1495725_13	556269.ACDQ01000009_gene1944	122.0	2.17e-29	Phage Tail Collar Domain	N/A
Pfam	UHGV-1495725_13	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
COG	UHGV-1495725_13	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1495725_13	PF07484,COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-1495725_14	phrog_13893	54.1	0.0000000000000015	tail protein	tail
eggNOG-mapper	UHGV-1495725_14	2754.EH55_08460	71.2	0.0000000000269	N/A	N/A
structural_annotation	UHGV-1495725_14	PF03906	N/A	N/A	N/A	N/A
PHROG	UHGV-1495725_15	phrog_9880	549.4	0	N/A	unknown function
UniRef90	UHGV-1495725_15	UniRef90_A0A1Q6RQR6	4400.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1495725_15	1123288.SOV_1c10750	189.0	7.00649e-45	N/A	N/A
Pfam	UHGV-1495725_15	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
UniRef90	UHGV-1495725_16	UniRef90_A0A1Q6RQM5	828.0	0	SLT domain-containing protein	N/A
COG	UHGV-1495725_16	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-1495725_16	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-1495725_17	phrog_418	130.9	2.7e-39	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1495725_17	568816.Acin_1826	103.0	1.07e-24	N/A	N/A
structural_annotation	UHGV-1495725_17	PF16789,TIGR02971,COG3524	N/A	N/A	N/A	N/A
PHROG	UHGV-1495725_18	phrog_308	109.1	3e-32	internal virion protein	head and packaging
structural_annotation	UHGV-1495725_18	PF13420,MF_02210,NF011709,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-1495725_19	phrog_376	607.5	0	tail protein	tail
UniRef90	UHGV-1495725_19	UniRef90_A0A0U1KV93	358.0	0	N/A	N/A
eggNOG-mapper	UHGV-1495725_19	568816.Acin_1828	662.0	0	N/A	N/A
structural_annotation	UHGV-1495725_19	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-1495725_20	phrog_394	155.5	0	tail protein	tail
UniRef90	UHGV-1495725_20	UniRef90_A0A8B2QU77	101.0	2.03e-23	Tail tube protein	N/A
eggNOG-mapper	UHGV-1495725_20	557598.LHK_01545	77.0	0.00000000000000925	N/A	N/A
structural_annotation	UHGV-1495725_20	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-1495725_21	phrog_427	64.1	2.1e-18	N/A	unknown function
structural_annotation	UHGV-1495725_21	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-1495725_22	phrog_212	205.6	0	major head protein	head and packaging
UniRef90	UHGV-1495725_22	UniRef90_A0A6J5KPX9	216.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1495725_22	568816.Acin_1831	350.0	0	N/A	N/A
Pfam	UHGV-1495725_22	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-1495725_22	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1495725_23	phrog_458	149.4	2.66247e-44	protease	other
eggNOG-mapper	UHGV-1495725_23	568816.Acin_1832	99.8	4.79e-23	N/A	N/A
PHROG	UHGV-1495725_24	phrog_528	105.5	1.5e-31	N/A	unknown function
eggNOG-mapper	UHGV-1495725_24	1401067.HMPREF0872_06805	94.7	1.69e-23	N/A	N/A
PHROG	UHGV-1495725_25	phrog_332	432.5	0	head-tail adaptor	connector
UniRef90	UHGV-1495725_25	UniRef90_UPI001F3F9DD9	548.0	0	portal protein	N/A
eggNOG-mapper	UHGV-1495725_25	568816.Acin_1834	603.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-1495725_25	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-1495725_25	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1495725_27	K06909	86.7	2.7e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1495725_27	phrog_2	160.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1495725_27	UniRef90_UPI001D00EC11	402.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1495725_27	568816.Acin_1836	414.0	0	Terminase RNaseH-like domain	N/A
Pfam	UHGV-1495725_27	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1495725_27	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1495725_27	PF03237,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1495725_29	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1495725_30	UniRef90_UPI00103300F2	64.7	0.00000000000642	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1495725_30	1408437.JNJN01000040_gene204	52.0	0.000000154	N/A	N/A
structural_annotation	UHGV-1495725_30	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1495725_31	PF13983	N/A	N/A	N/A	N/A
PHROG	UHGV-1495725_33	phrog_15863	272.6	0	N/A	unknown function
UniRef90	UHGV-1495725_33	UniRef90_R6WLL6	576.0	0	Cytochrome c domain-containing protein	N/A
eggNOG-mapper	UHGV-1495725_33	693746.OBV_01780	128.0	2.03e-33	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-1495725_33	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
KOfam	UHGV-1495725_39	K03111	55.8	0.0000000000000012	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1495725_39	phrog_44	59.6	8.3e-17	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1495725_39	UniRef90_R6WGR4	259.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1495725_39	1280954.HPO_10557	63.2	0.000000000113	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1495725_39	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1495725_39	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1495725_39	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1495725_39	PF00436,MF_00984,TIGR00621,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1495725_40	K01160	57.8	3.1e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1495725_40	phrog_140	131.5	4.2e-39	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1495725_40	UniRef90_A0A316S9J1	141.0	2.02e-40	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1495725_40	743719.PaelaDRAFT_5642	124.0	1.79e-34	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1495725_40	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1495725_40	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1495725_40	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1495725_45	K21919	61.8	8.5e-18	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-1495725_45	phrog_923	69.4	1.1e-21	N/A	unknown function
UniRef90	UHGV-1495725_45	UniRef90_A0A412X6I1	122.0	1.17e-31	Pentapeptide repeat-containing protein	N/A
Pfam	UHGV-1495725_45	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
structural_annotation	UHGV-1495725_45	PF13599,NF011744	N/A	N/A	N/A	N/A
PHROG	UHGV-1495725_46	phrog_3878	53.5	0.0000000000000038	N/A	unknown function
structural_annotation	UHGV-1495725_46	PF19607	N/A	N/A	N/A	N/A
KOfam	UHGV-1495725_49	K00558	259.5	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1495725_49	phrog_116	294.2	0	DNA methyltransferase	other
UniRef90	UHGV-1495725_49	UniRef90_A0A1Q6RAH0	744.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1495725_49	203119.Cthe_1728	383.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1495725_49	MTase_II_00058	208.6	0	Type II methyltransferase	RM
Pfam	UHGV-1495725_49	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1495725_49	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1495725_49	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1495725_49	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1495725_52	phrog_11769	143.3	1.80067e-42	N/A	unknown function
UniRef90	UHGV-1495725_52	UniRef90_R6WTP4	305.0	0	N-terminal phage replisome organizer	N/A
eggNOG-mapper	UHGV-1495725_52	1052684.PPM_2791	130.0	1.02e-32	sequence-specific DNA binding	N/A
Pfam	UHGV-1495725_52	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1495725_52	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-1495725_52	COG1522	N/A	N/A	DNA-binding transcriptional regulator, Lrp family	N/A
structural_annotation	UHGV-1495725_52	PF09681,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-1495725_53	K07455	199.5	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1495725_53	phrog_148	208.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1495725_53	UniRef90_R6XVK6	356.0	0	Putative phage RecT family protein	N/A
eggNOG-mapper	UHGV-1495725_53	525257.HMPREF0204_11404	205.0	0	RecT family	N/A
Pfam	UHGV-1495725_53	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1495725_53	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1495725_53	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1495725_53	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
UniRef90	UHGV-1495725_54	UniRef90_R6WLK2	130.0	1.05e-37	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1495725_54	457421.CBFG_03225	50.4	0.0000016	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1495725_54	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1495725_54	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1495725_54	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1495725_55	phrog_434	335.8	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1495725_55	UniRef90_R6WGP6	609.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-1495725_55	706434.HMPREF9429_00770	365.0	0	YqaJ viral recombinase family protein	N/A
Pfam	UHGV-1495725_55	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1495725_55	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1495725_55	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1495725_55	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-1495725_57	phrog_14367	70.8	9.4e-21	N/A	unknown function
UniRef90	UHGV-1495725_57	UniRef90_R6WTN1	213.0	0	Peptidoglycan-binding LysM	N/A
Pfam	UHGV-1495725_57	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1495725_57	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1495725_57	MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1495725_58	NF041909	N/A	N/A	N/A	N/A
PHROG	UHGV-1495725_59	phrog_6058	77.3	1.1e-22	N/A	unknown function
UniRef90	UHGV-1495725_59	UniRef90_A0A0U9H7T0	60.1	0.000000000198	Modification methylase SinI	N/A
eggNOG-mapper	UHGV-1495725_59	1280689.AUJC01000011_gene1497	68.9	0.0000000000000119	N/A	N/A
structural_annotation	UHGV-1495725_59	PF12728,TIGR01764	N/A	N/A	N/A	N/A
KOfam	UHGV-1495725_62	K18830	58.9	1.2e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1495725_62	phrog_2967	48.6	0.00000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-1495725_62	UniRef90_R6X1Y8	215.0	0	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-1495725_62	1151292.QEW_0725	92.0	1.98e-22	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1495725_62	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1495725_62	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1495725_62	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A