UHGV-1498318 (vOTU-069516)

Viral Genome: UHGV-1498318

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1498318
vOTU ID	vOTU-069516
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0287899
Associated BioSample	SAMEA3951721
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.25 (High-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9826
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.51
Jumbo phage	No

Genome content
Genome length (bp)	43,800
GC content	41.21%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	70
CDS density	93%
Average CDS length (bps)	579.86
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 97.25)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1498318_1	phrog_8841	550.0	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1498318_1	UniRef90_A0A412EL97	1228.0	0	N/A	N/A
eggNOG-mapper	UHGV-1498318_1	476272.RUMHYD_01742	768.0	0	N/A	N/A
Pfam	UHGV-1498318_1	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-1498318_1	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-1498318_1	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1498318_1	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-1498318_2	K02316	65.7	6.9e-19	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1498318_2	phrog_11992	154.5	0	N/A	unknown function
UniRef90	UHGV-1498318_2	UniRef90_A0A395X7I4	297.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-1498318_2	476272.RUMHYD_01741	179.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-1498318_2	drt-UG29	55.0	6.6e-16	DRT	DRT
Pfam	UHGV-1498318_2	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-1498318_2	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1498318_2	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-1498318_3	phrog_3490	145.8	1.90577e-43	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1498318_3	UniRef90_A0A395XB48	325.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1498318_3	357809.Cphy_2986	221.0	0	N/A	N/A
Pfam	UHGV-1498318_3	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-1498318_3	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-1498318_4	K03111	132.9	3.4e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1498318_4	phrog_44	136.8	1.3e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1498318_4	UniRef90_A0A412ELG8	249.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1498318_4	658655.HMPREF0988_02584	191.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1498318_4	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1498318_4	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1498318_4	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1498318_4	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1498318_4	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1498318_5	phrog_7838	139.9	1.79997e-41	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1498318_5	UniRef90_A0A8D9UGW3	182.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-1498318_5	742767.HMPREF9456_02052	183.0	0	N/A	N/A
structural_annotation	UHGV-1498318_5	PF04098,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-1498318_6	UniRef90_R6RDX0	79.0	5.26e-18	Arginyl-tRNA synthetase	N/A
structural_annotation	UHGV-1498318_7	NF001645	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-1498318_11	cluster_17974	60.1	9.42e-16	NA	N/A
PHROG	UHGV-1498318_12	phrog_6058	54.8	9e-16	N/A	unknown function
UniRef90	UHGV-1498318_12	UniRef90_A0A2V1JQ38	63.9	0.0000000000317	Glycogen synthase	N/A
eggNOG-mapper	UHGV-1498318_12	742733.HMPREF9469_05094	62.0	0.0000000000302	N/A	N/A
PHROG	UHGV-1498318_15	phrog_12206	40.3	0.000000000044	N/A	unknown function
structural_annotation	UHGV-1498318_15	PF13601,MF_01819,NF008565,COG1846	N/A	N/A	N/A	N/A
KOfam	UHGV-1498318_16	K18830	65.0	6.6e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1498318_16	phrog_8	53.6	0.0000000000000039	transcriptional regulator	transcription regulation
UniRef90	UHGV-1498318_16	UniRef90_A0A6L8T004	238.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1498318_16	748224.HMPREF9436_01444	118.0	2.06e-32	N/A	N/A
PADLOC	UHGV-1498318_16	retron_type_VI_hth_cluster2_1	40.1	0.000000000089	N/A	Retron
Pfam	UHGV-1498318_16	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1498318_16	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1498318_16	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1498318_19	UniRef90_A0A3A6GQZ1	186.0	0	Zinc ribbon domain-containing protein	N/A
COG	UHGV-1498318_19	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-1498318_20	K14059	95.2	8.9e-28	int; integrase	N/A
PHROG	UHGV-1498318_20	phrog_1	123.0	2.8e-36	integrase	integration and excision
UniRef90	UHGV-1498318_20	UniRef90_A0A6L8SXX0	792.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1498318_20	1235792.C808_05256	357.0	0	Belongs to the 'phage' integrase family	N/A
COG	UHGV-1498318_20	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1498318_20	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1498318_21	K07273	202.0	0	acm; lysozyme	N/A
PHROG	UHGV-1498318_21	phrog_6745	182.7	0	endolysin	lysis
UniRef90	UHGV-1498318_21	UniRef90_A0A6L8SXR6	907.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-1498318_21	457412.RSAG_00790	667.0	0	CHAP domain	N/A
Pfam	UHGV-1498318_21	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1498318_21	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-1498318_21	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1498318_21	PF01183,TIGR02594,TIGR04303,COG3757,COG3942	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1498318_22	NF040910	N/A	N/A	N/A	N/A
KOfam	UHGV-1498318_24	K19719	94.4	2.1e-28	COL2A; collagen type II alpha	N/A
PHROG	UHGV-1498318_24	phrog_819	132.2	0	tail protein	tail
UniRef90	UHGV-1498318_24	UniRef90_A0A3A6GQL7	1162.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-1498318_24	1508644.SFBmNL_00815	98.6	2.52e-18	N/A	N/A
Pfam	UHGV-1498318_24	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-1498318_24	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1498318_24	PF19789,PF16323,COG2033	N/A	N/A	N/A	N/A
PHROG	UHGV-1498318_25	phrog_18444	80.3	1.3e-23	N/A	unknown function
PHROG	UHGV-1498318_26	phrog_6616	540.4	0	tail protein	tail
UniRef90	UHGV-1498318_26	UniRef90_A0A352BLY8	516.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1498318_26	33035.JPJF01000043_gene1002	230.0	0	N/A	N/A
structural_annotation	UHGV-1498318_26	PF05113,PF18432,NF033848,NF011735,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1498318_27	phrog_1194	84.7	7.1e-25	N/A	unknown function
structural_annotation	UHGV-1498318_27	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1498318_28	phrog_1535	478.8	0	tail length tape measure protein	tail
UniRef90	UHGV-1498318_28	UniRef90_A0A173R880	824.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1498318_28	476272.RUMHYD_01785	817.0	0	phage tail tape measure protein	N/A
COG	UHGV-1498318_28	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1498318_28	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1498318_29	phrog_706	131.6	4.8e-39	N/A	unknown function
UniRef90	UHGV-1498318_29	UniRef90_UPI001BAD00AD	212.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1498318_29	411459.RUMOBE_01383	350.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1498318_29	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1498318_29	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1498318_30	phrog_11299	66.6	3.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-1498318_30	411459.RUMOBE_01382	57.8	0.0000000115	N/A	N/A
structural_annotation	UHGV-1498318_30	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1498318_31	phrog_3099	133.0	1.6e-39	N/A	unknown function
eggNOG-mapper	UHGV-1498318_31	411902.CLOBOL_00129	170.0	0	N/A	N/A
structural_annotation	UHGV-1498318_31	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1498318_32	phrog_3266	92.4	3.3e-27	tail completion	connector
eggNOG-mapper	UHGV-1498318_32	476272.RUMHYD_01781	150.0	4.90454e-44	N/A	N/A
structural_annotation	UHGV-1498318_32	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1498318_33	phrog_556	66.1	3.2e-19	minor head protein	head and packaging
UniRef90	UHGV-1498318_33	UniRef90_UPI000E4989EB	297.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1498318_33	476272.RUMHYD_01780	160.0	0	N/A	N/A
Pfam	UHGV-1498318_33	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1498318_33	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1498318_34	phrog_3366	97.7	9.7e-29	N/A	unknown function
eggNOG-mapper	UHGV-1498318_34	476272.RUMHYD_01779	157.0	0	N/A	N/A
structural_annotation	UHGV-1498318_34	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1498318_35	phrog_1129	74.7	7.6e-22	holin	lysis
UniRef90	UHGV-1498318_35	UniRef90_A0A395X7B2	174.0	0	Enolase	N/A
eggNOG-mapper	UHGV-1498318_35	411461.DORFOR_00721	112.0	1.45e-31	N/A	N/A
Pfam	UHGV-1498318_35	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1498318_35	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1498318_36	1444310.JANV01000162_gene1177	49.3	0.00000198	N/A	N/A
PHROG	UHGV-1498318_37	phrog_541	97.7	5.1e-29	head-tail adaptor	connector
eggNOG-mapper	UHGV-1498318_37	476272.RUMHYD_01778	108.0	8.54e-28	N/A	N/A
PHROG	UHGV-1498318_38	phrog_544	164.8	0	major head protein	head and packaging
UniRef90	UHGV-1498318_38	UniRef90_A0A395X7A1	706.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1498318_38	1232453.BAIF02000011_gene3359	392.0	0	N/A	N/A
Pfam	UHGV-1498318_38	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-1498318_38	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1498318_39	phrog_194	67.5	2.4e-19	head scaffolding protein	head and packaging
UniRef90	UHGV-1498318_39	UniRef90_UPI001D14C9C8	188.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1498318_39	476272.RUMHYD_01775	199.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1498318_39	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-1498318_40	phrog_28802	224.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1498318_40	476272.RUMHYD_01772	199.0	0	N/A	N/A
PHROG	UHGV-1498318_41	phrog_20016	205.7	0	N/A	unknown function
UniRef90	UHGV-1498318_41	UniRef90_A0A285PT46	167.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1498318_41	397290.C810_05214	187.0	0	N/A	N/A
structural_annotation	UHGV-1498318_41	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1498318_42	phrog_16490	193.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1498318_42	397290.C810_01328	180.0	0	N/A	N/A
PHROG	UHGV-1498318_43	phrog_22984	97.8	5.7e-29	N/A	unknown function
PHROG	UHGV-1498318_44	phrog_21718	136.5	9.99995e-41	N/A	unknown function
eggNOG-mapper	UHGV-1498318_44	397290.C810_05210	130.0	3.42e-36	N/A	N/A
UniRef90	UHGV-1498318_45	UniRef90_A0A395X7A4	178.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-1498318_45	476272.RUMHYD_01766	120.0	3.06e-34	N/A	N/A
PHROG	UHGV-1498318_46	phrog_3754	111.9	4.1e-33	N/A	unknown function
eggNOG-mapper	UHGV-1498318_46	476272.RUMHYD_01764	180.0	0	N/A	N/A
PHROG	UHGV-1498318_47	phrog_581	250.5	0	minor head protein	head and packaging
UniRef90	UHGV-1498318_47	UniRef90_A0A395X791	706.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1498318_47	33035.JPJF01000106_gene3134	380.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1498318_47	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1498318_47	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1498318_47	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1498318_48	phrog_11541	131.1	5.9e-39	N/A	unknown function
UniRef90	UHGV-1498318_48	UniRef90_A0A415YBY8	943.0	0	SGNH/GDSL hydrolase family protein	N/A
eggNOG-mapper	UHGV-1498318_48	411479.BACUNI_00118	62.0	0.000000107	GDSL-like Lipase/Acylhydrolase	N/A
Pfam	UHGV-1498318_48	PF00657	N/A	N/A	GDSL-like Lipase/Acylhydrolase	Lipase_GDSL
structural_annotation	UHGV-1498318_48	PF16255,NF007819,COG2755	N/A	N/A	N/A	N/A
PHROG	UHGV-1498318_49	phrog_533	295.4	0	portal protein	head and packaging
UniRef90	UHGV-1498318_49	UniRef90_A0A1C6CDM8	712.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1498318_49	33035.JPJF01000106_gene3135	540.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-1498318_49	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1498318_51	K06909	332.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1498318_51	phrog_3717	166.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1498318_51	UniRef90_A0A395X9V4	841.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1498318_51	33035.JPJF01000106_gene3136	403.0	0	Terminase small subunit	N/A
Pfam	UHGV-1498318_51	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-1498318_51	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1498318_51	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1498318_51	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1498318_52	phrog_606	95.1	6.9e-28	terminase small subunit	head and packaging
UniRef90	UHGV-1498318_52	UniRef90_UPI001F487344	170.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1498318_52	397290.C810_05185	177.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-1498318_52	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1498318_52	PF16677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1498318_55	476272.RUMHYD_03348	61.2	0.000000000555	N/A	N/A
PHROG	UHGV-1498318_58	phrog_8684	101.6	4.2e-30	N/A	unknown function
UniRef90	UHGV-1498318_58	UniRef90_A0A173W6W0	188.0	0	YopX protein	N/A
eggNOG-mapper	UHGV-1498318_58	411470.RUMGNA_02199	129.0	2.04e-36	N/A	N/A
Pfam	UHGV-1498318_58	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1498318_58	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1498318_58	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1498318_59	phrog_874	171.7	0	N/A	unknown function
UniRef90	UHGV-1498318_59	UniRef90_C4IFC5	183.0	0	Upf86.8	N/A
eggNOG-mapper	UHGV-1498318_59	632245.CLP_1629	183.0	0	N/A	N/A
structural_annotation	UHGV-1498318_59	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-1498318_60	phrog_20593	43.7	0.0000000000034	N/A	unknown function
eggNOG-mapper	UHGV-1498318_64	665950.HMPREF1025_01402	92.0	3.21e-24	N/A	N/A
UniRef90	UHGV-1498318_65	UniRef90_UPI001898116D	85.5	4.13e-19	N/A	N/A
structural_annotation	UHGV-1498318_65	PF04448	N/A	N/A	N/A	N/A
KOfam	UHGV-1498318_66	K19779	54.9	0.0000000000000011	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-1498318_66	phrog_599	57.6	2.7e-16	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1498318_66	UniRef90_A0A317UED7	121.0	1.31e-34	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-1498318_66	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1498318_66	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1498318_66	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1498318_66	PF14354,TIGR03655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1498318_69	UniRef90_A0A6L8SWV5	167.0	0	Winged helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-1498318_69	PF01726,COG0640	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1498318_70	NF010187	N/A	N/A	N/A	N/A