UHGV-1500077 (vOTU-013651)

Viral Genome: UHGV-1500077

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1500077
vOTU ID	vOTU-013651
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0278720
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.78 (High-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9816
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.82
Jumbo phage	No

Genome content
Genome length (bp)	30,855
GC content	44.52%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	41
CDS density	92%
Average CDS length (bps)	693.95
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 94.78)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1500077_1	phrog_1129	75.0	6.5e-22	holin	lysis
UniRef90	UHGV-1500077_1	UniRef90_A0A416AFW1	158.0	0	Enolase	N/A
eggNOG-mapper	UHGV-1500077_1	411461.DORFOR_00721	99.4	3.11e-26	N/A	N/A
Pfam	UHGV-1500077_1	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1500077_1	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-1500077_2	K02234	45.8	0.0000000000000069	cobW; cobalamin biosynthesis protein CobW	N/A
UniRef90	UHGV-1500077_2	UniRef90_R5NS11	629.0	0	CobW/P47K family protein	N/A
eggNOG-mapper	UHGV-1500077_2	411489.CLOL250_01912	536.0	0	N/A	N/A
Pfam	UHGV-1500077_2	PF02492	N/A	N/A	CobW/HypB/UreG, nucleotide-binding domain	cobW
COG	UHGV-1500077_2	COG0523	N/A	N/A	Zinc metallochaperone YeiR/ZagA and related GTPases, G3E family	N/A
PHROG	UHGV-1500077_3	phrog_19291	83.4	1.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-1500077_3	1232449.BAHV02000021_gene1072	118.0	2.91e-26	N/A	N/A
structural_annotation	UHGV-1500077_3	PF02191,COG3823	N/A	N/A	N/A	N/A
PHROG	UHGV-1500077_4	phrog_23052	351.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1500077_4	483218.BACPEC_01320	313.0	0	N/A	N/A
structural_annotation	UHGV-1500077_4	PF14879,PF05113,NF033848,NF033147,COG3500,COG4935	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1500077_5	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1500077_6	phrog_1272	380.6	0	tail length tape measure protein	tail
UniRef90	UHGV-1500077_6	UniRef90_A0A373ZD47	1081.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1500077_6	180332.JTGN01000004_gene2272	316.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1500077_6	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1500077_6	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1500077_6	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1500077_6	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1500077_7	phrog_709	54.7	1.7e-16	N/A	unknown function
structural_annotation	UHGV-1500077_7	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1500077_8	phrog_88	173.4	0	major tail protein	tail
UniRef90	UHGV-1500077_8	UniRef90_A0A373ZCY5	405.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1500077_8	243164.DET1080	185.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1500077_8	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1500077_8	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1500077_9	phrog_78	45.9	0.000000000001	tail terminator	connector
eggNOG-mapper	UHGV-1500077_9	698758.AXY_02180	73.9	9.06e-16	N/A	N/A
structural_annotation	UHGV-1500077_9	PF20765	N/A	N/A	N/A	N/A
UniRef90	UHGV-1500077_10	UniRef90_UPI00189E13A9	223.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1500077_10	411902.CLOBOL_03876	55.1	0.0000000799	COG NOG18351 non supervised orthologous group	N/A
Pfam	UHGV-1500077_10	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1500077_10	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1500077_11	phrog_1951	99.0	2.4e-29	head-tail adaptor	connector
UniRef90	UHGV-1500077_11	UniRef90_A0A3R6UXW7	204.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-1500077_11	198094.BA_3781	74.3	6.24e-16	head-tail adaptor	N/A
NCBIFam	UHGV-1500077_11	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-1500077_11	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1500077_11	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1500077_12	phrog_2550	73.3	1.8e-21	N/A	unknown function
UniRef90	UHGV-1500077_12	UniRef90_UPI0008717716	119.0	3.23e-33	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1500077_12	1226322.HMPREF1545_00117	68.2	0.0000000000000913	N/A	N/A
structural_annotation	UHGV-1500077_12	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1500077_13	phrog_10	149.9	9.80909e-45	major head protein	head and packaging
UniRef90	UHGV-1500077_13	UniRef90_A0A373ZD06	671.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1500077_13	396034.A6XMJ6_9CAUD	375.0	0	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-1500077_13	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1500077_13	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1500077_13	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1500077_14	K06904	158.2	0	N/A	N/A
PHROG	UHGV-1500077_14	phrog_80	180.7	0	head maturation protease	head and packaging
UniRef90	UHGV-1500077_14	UniRef90_A0A373ZF38	377.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1500077_14	398512.JQKC01000009_gene450	235.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-1500077_14	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1500077_14	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1500077_14	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1500077_14	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1500077_15	phrog_12	159.1	0	portal protein	head and packaging
UniRef90	UHGV-1500077_15	UniRef90_A0A8F2EYU1	778.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1500077_15	1235798.C817_04583	387.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1500077_15	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1500077_15	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1500077_15	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1500077_15	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1500077_16	phrog_9	308.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1500077_16	UniRef90_A0A373ZFM8	1134.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1500077_16	1121428.DESHY_20134___1	764.0	0	Phage Terminase	N/A
Pfam	UHGV-1500077_16	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1500077_16	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1500077_16	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1500077_16	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1500077_17	phrog_361	71.1	1.4e-20	terminase small subunit	head and packaging
UniRef90	UHGV-1500077_17	UniRef90_R5V087	126.0	6.48e-35	Phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-1500077_17	1033744.CAEL01000029_gene1286	82.8	1.55e-18	Phage terminase, small subunit	N/A
Pfam	UHGV-1500077_17	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1500077_17	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-1500077_18	K07451	52.6	0.0000000000000077	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1500077_18	phrog_119	88.5	7.5e-26	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500077_18	UniRef90_UPI00189E7D6D	202.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1500077_18	358681.BBR47_29120	105.0	3.53e-28	HNH nucleases	N/A
Pfam	UHGV-1500077_18	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1500077_18	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1500077_18	TIGR02646	N/A	N/A	N/A	N/A
PHROG	UHGV-1500077_19	phrog_199	94.4	1.1e-27	holin	lysis
UniRef90	UHGV-1500077_19	UniRef90_UPI001D0ECA44	258.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-1500077_19	742740.HMPREF9474_02333	221.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1500077_19	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1500077_19	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1500077_19	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1500077_19	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1500077_21	phrog_11237	95.7	4.4e-28	N/A	unknown function
eggNOG-mapper	UHGV-1500077_21	411461.DORFOR_01161	112.0	4.08e-30	N/A	N/A
KOfam	UHGV-1500077_22	K01448	143.4	1.69978e-42	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1500077_22	phrog_435	153.4	1.4013e-45	endolysin	lysis
UniRef90	UHGV-1500077_22	UniRef90_A0A3R6ZZA0	519.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1500077_22	1408437.JNJN01000040_gene194	228.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1500077_22	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1500077_22	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1500077_22	PF01520,PF18342,MF_00562,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
UniRef90	UHGV-1500077_23	UniRef90_A0A174QL97	79.3	2.68e-18	Chemotaxis protein	N/A
eggNOG-mapper	UHGV-1500077_23	610130.Closa_1388	98.6	9.51e-27	N/A	N/A
structural_annotation	UHGV-1500077_23	NF008671,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-1500077_25	phrog_7566	108.6	2.4e-32	N/A	unknown function
eggNOG-mapper	UHGV-1500077_25	411459.RUMOBE_00948	100.0	5.78e-26	N/A	N/A
PHROG	UHGV-1500077_27	phrog_24368	52.4	0.0000000000000075	N/A	unknown function
eggNOG-mapper	UHGV-1500077_27	1235792.C808_00071	52.0	0.000000919	N/A	N/A
PHROG	UHGV-1500077_28	phrog_15077	104.3	2.1e-30	N/A	unknown function
UniRef90	UHGV-1500077_28	UniRef90_A0A3E3IZW1	164.0	4.25995e-42	N/A	N/A
eggNOG-mapper	UHGV-1500077_28	1280698.AUJS01000007_gene1019	170.0	4.2039e-45	N/A	N/A
structural_annotation	UHGV-1500077_28	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-1500077_29	phrog_8470	230.6	0	N/A	unknown function
UniRef90	UHGV-1500077_29	UniRef90_UPI001D0E6B3F	1360.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1500077_29	411902.CLOBOL_05697	515.0	0	PcfJ-like protein	N/A
Pfam	UHGV-1500077_29	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1500077_29	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1500077_30	phrog_4433	59.5	1.6e-19	N/A	unknown function
UniRef90	UHGV-1500077_30	UniRef90_W0HPP5	70.1	0.0000000000182	C-type lectin family member (2D393) / c-type lectin family member (2D393)	N/A
eggNOG-mapper	UHGV-1500077_30	2342.SOPEG_2455	70.1	0.00000000000305	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1500077_30	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1500077_30	PF12120,NF000318	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1500077_31	411902.CLOBOL_05699	133.0	2.28e-37	N/A	N/A
KOfam	UHGV-1500077_32	K03469	41.8	0.000000000017	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-1500077_32	phrog_531	40.1	0.000000000066	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500077_32	UniRef90_A0A417PKX1	306.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1500077_32	1116472.MGMO_8c00720	63.9	0.0000000000858	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-1500077_32	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1500077_32	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1500077_32	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-1500077_33	phrog_3584	135.0	4.79999e-40	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1500077_33	1235800.C819_02258	236.0	0	N/A	N/A
structural_annotation	UHGV-1500077_33	PF21578,NF041486	N/A	N/A	N/A	N/A
UniRef90	UHGV-1500077_35	UniRef90_R5VU56	130.0	4.08e-37	HTH_11 domain-containing protein	N/A
structural_annotation	UHGV-1500077_35	PF20063	N/A	N/A	N/A	N/A
KOfam	UHGV-1500077_36	K03427	62.4	6e-18	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-1500077_36	phrog_5696	240.6	0	N/A	unknown function
UniRef90	UHGV-1500077_36	UniRef90_A0A8E3SKS1	209.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-1500077_36	1245471.PCA10_p0930	154.0	1.13505e-43	N-6 DNA Methylase	N/A
Pfam	UHGV-1500077_36	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-1500077_36	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-1500077_36	COG0286	N/A	N/A	N/A	N/A
KOfam	UHGV-1500077_37	K04763	185.9	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1500077_37	phrog_1	158.8	0	integrase	integration and excision
UniRef90	UHGV-1500077_37	UniRef90_UPI001DC26F47	300.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1500077_37	689781.AUJX01000017_gene2491	214.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1500077_37	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1500077_37	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1500077_37	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1500077_37	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-1500077_38	phrog_31564	44.1	0.0000000000038	N/A	unknown function
KOfam	UHGV-1500077_40	K22299	44.4	0.0000000000035	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1500077_40	phrog_3	41.6	0.000000000045	transcriptional repressor	transcription regulation
UniRef90	UHGV-1500077_40	UniRef90_A0A8F2JAH4	147.0	8.40779e-45	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1500077_40	411490.ANACAC_00814	114.0	1.39e-32	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-1500077_40	retron_type_VI_hth_cluster2_1	42.8	0.000000000013	N/A	Retron
Pfam	UHGV-1500077_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1500077_40	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1500077_40	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1500077_41	K01356	155.4	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1500077_41	phrog_4	130.4	1.6e-38	transcriptional repressor	transcription regulation
UniRef90	UHGV-1500077_41	UniRef90_A0A417PKX0	415.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1500077_41	411490.ANACAC_00815	299.0	0	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1500077_41	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
Pfam	UHGV-1500077_41	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1500077_41	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1500077_41	PF01381,PF00717,MF_00015,NF041951,COG1396	N/A	N/A	N/A	N/A