UHGV-1500084 (vOTU-036028)

Viral Genome: UHGV-1500084

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1500084
vOTU ID	vOTU-036028
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0278697
Associated BioSample	SAMN06111970
Viral genome confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	59.1 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9789
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.05
Jumbo phage	No

Genome content
Genome length (bp)	37,844
GC content	50.15%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	60
CDS density	93%
Average CDS length (bps)	585.80
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 59.1)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1500084_1	phrog_7964	216.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1500084_1	1232443.BAIA02000135_gene1443	79.7	0.00000000000000138	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-1500084_1	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-1500084_1	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-1500084_1	NF040481	N/A	N/A	N/A	N/A
PHROG	UHGV-1500084_6	phrog_2872	230.3	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500084_6	UniRef90_UPI00058FD242	273.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1500084_6	1345695.CLSA_c30180	278.0	0	AAA domain	N/A
Pfam	UHGV-1500084_6	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1500084_6	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1500084_7	phrog_18107	69.2	7.4e-20	N/A	unknown function
eggNOG-mapper	UHGV-1500084_7	476272.RUMHYD_02831	187.0	0	N/A	N/A
structural_annotation	UHGV-1500084_7	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1500084_8	phrog_3490	117.4	9.7e-35	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500084_8	UniRef90_UPI000C0868DD	209.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1500084_8	476272.RUMHYD_01740	183.0	0	ERCC4 domain	N/A
Pfam	UHGV-1500084_8	PF02732	N/A	N/A	ERCC4 domain	ERCC4
COG	UHGV-1500084_8	COG1948	N/A	N/A	ERCC4-type crossover junction endonuclease	N/A
structural_annotation	UHGV-1500084_8	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-1500084_9	K02316	60.1	3.6e-17	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1500084_9	phrog_11992	113.8	1.7e-33	N/A	unknown function
UniRef90	UHGV-1500084_9	UniRef90_A0A7X5KT49	92.8	1.4e-20	DNA primase	N/A
eggNOG-mapper	UHGV-1500084_9	1280680.AUJU01000017_gene3845	82.4	3.94e-17	CHC2 zinc finger	N/A
PADLOC	UHGV-1500084_9	drt-UG29	49.2	0.000000000000044	DRT	DRT
Pfam	UHGV-1500084_9	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-1500084_9	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1500084_9	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-1500084_10	phrog_8841	420.4	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500084_10	UniRef90_A0A372V3W4	466.0	0	N/A	N/A
eggNOG-mapper	UHGV-1500084_10	903814.ELI_3221	360.0	0	N/A	N/A
Pfam	UHGV-1500084_10	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-1500084_10	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-1500084_10	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1500084_10	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
PHROG	UHGV-1500084_12	phrog_7704	42.1	0.00000000001	N/A	unknown function
UniRef90	UHGV-1500084_12	UniRef90_A0A316RLR0	51.2	0.00000342	N/A	N/A
Pfam	UHGV-1500084_12	PF04448	N/A	N/A	N/A	DUF551
KOfam	UHGV-1500084_16	K14059	222.1	0	int; integrase	N/A
PHROG	UHGV-1500084_16	phrog_1	182.4	0	integrase	integration and excision
UniRef90	UHGV-1500084_16	UniRef90_A0A2G6PJX2	211.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1500084_16	1514668.JOOA01000001_gene661	184.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1500084_16	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1500084_16	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1500084_16	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1500084_16	PF00589,PF13102,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1500084_20	phrog_801	74.3	2e-21	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-1500084_20	UniRef90_UPI0015F83B50	70.9	0.0000000000000975	N/A	N/A
eggNOG-mapper	UHGV-1500084_20	1094755.MCO_01919	65.1	0.0000000000027	N/A	N/A
Pfam	UHGV-1500084_20	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
PHROG	UHGV-1500084_23	phrog_36	71.4	1.5e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1500084_23	UniRef90_A0A1D9FMP9	70.5	0.000000000000798	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-1500084_23	875454.BAEW01000002_gene486	63.5	0.000000000053	N/A	N/A
eggNOG-mapper	UHGV-1500084_25	1415774.U728_1710	53.1	0.0000000478	N/A	N/A
KOfam	UHGV-1500084_26	K00390	46.8	0.00000000000029	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1500084_26	phrog_424	48.6	0.000000000000099	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1500084_26	UniRef90_A0A4P5P4X6	270.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-1500084_26	641147.HMPREF9021_02236	266.0	0	sulfate reduction	N/A
Pfam	UHGV-1500084_26	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1500084_26	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1500084_26	PF01507,MF_00345,NF006351,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1500084_27	phrog_9353	220.8	0	N/A	unknown function
UniRef90	UHGV-1500084_27	UniRef90_A0A4P5P3Z7	236.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1500084_27	1231336.L248_2139	234.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-1500084_27	MTase_II_00015	53.3	0.0000000000000054	Type II methyltransferase	RM
Pfam	UHGV-1500084_27	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1500084_27	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1500084_27	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-1500084_28	phrog_3193	55.6	7.3e-18	N/A	unknown function
UniRef90	UHGV-1500084_28	UniRef90_R2XPF3	110.0	9.8e-29	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1500084_28	1158614.I592_03011	110.0	1.64e-29	ASCH domain	N/A
Pfam	UHGV-1500084_28	PF04266	N/A	N/A	ASCH domain	ASCH
Pfam	UHGV-1500084_29	PF13518	N/A	N/A	Helix-turn-helix domain	HTH_28
KOfam	UHGV-1500084_30	K06909	307.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1500084_30	phrog_3717	280.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1500084_30	UniRef90_A0A6M1U7K2	637.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1500084_30	1430331.EP10_10340	612.0	0	Phage terminase, large subunit	N/A
Pfam	UHGV-1500084_30	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1500084_30	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1500084_30	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1500084_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1500084_30	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1500084_31	phrog_64	215.1	0	portal protein	head and packaging
UniRef90	UHGV-1500084_31	UniRef90_G9RRL2	489.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-1500084_31	665956.HMPREF1032_03614	489.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1500084_31	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1500084_31	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1500084_32	phrog_115	42.4	0.0000000000085	minor head protein	head and packaging
UniRef90	UHGV-1500084_32	UniRef90_UPI0019689291	147.0	3.19e-37	minor capsid protein	N/A
eggNOG-mapper	UHGV-1500084_32	665956.HMPREF1032_03615	144.0	6.92e-37	cell adhesion	N/A
Pfam	UHGV-1500084_32	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1500084_32	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1500084_32	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1500084_33	phrog_172	106.0	3.4e-31	head scaffolding protein	head and packaging
UniRef90	UHGV-1500084_33	UniRef90_A0A3D4XEV7	90.5	7.82e-19	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1500084_33	742733.HMPREF9469_01824	72.4	0.000000000000814	N/A	N/A
Pfam	UHGV-1500084_33	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1500084_33	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1500084_34	phrog_212	247.8	0	major head protein	head and packaging
UniRef90	UHGV-1500084_34	UniRef90_UPI0019CFEAB4	501.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-1500084_34	1408437.JNJN01000045_gene592	483.0	0	N/A	N/A
structural_annotation	UHGV-1500084_34	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1500084_35	935836.JAEL01000086_gene51	46.6	0.00000717	N/A	N/A
eggNOG-mapper	UHGV-1500084_36	665956.HMPREF1032_03621	85.1	3.59e-20	N/A	N/A
Pfam	UHGV-1500084_36	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
eggNOG-mapper	UHGV-1500084_37	445972.ANACOL_01848	107.0	2.19e-28	N/A	N/A
PHROG	UHGV-1500084_38	phrog_5	40.3	0.000000000069	tail completion or Neck1 protein	connector
eggNOG-mapper	UHGV-1500084_38	445972.ANACOL_01849	192.0	0	N/A	N/A
structural_annotation	UHGV-1500084_38	PF20039,TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1500084_39	665956.HMPREF1032_03624	120.0	3e-33	N/A	N/A
Pfam	UHGV-1500084_39	PF11367	N/A	N/A	N/A	DUF3168
structural_annotation	UHGV-1500084_39	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1500084_40	445972.ANACOL_01851	116.0	6.45e-31	N/A	N/A
structural_annotation	UHGV-1500084_40	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1500084_41	PF12363	N/A	N/A	N/A	N/A
PHROG	UHGV-1500084_43	phrog_1535	182.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1500084_43	1120746.CCNL01000014_gene2105	233.0	0	tape measure	N/A
COG	UHGV-1500084_43	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1500084_44	phrog_2546	136.9	1.4e-40	N/A	unknown function
UniRef90	UHGV-1500084_44	UniRef90_UPI001D126C16	107.0	6.6e-26	zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-1500084_44	1160721.RBI_II00529	125.0	1.87e-33	PFAM Tellurite resistance protein TerB	N/A
Pfam	UHGV-1500084_44	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
COG	UHGV-1500084_44	COG3793	N/A	N/A	Tellurite resistance protein TerB	N/A
structural_annotation	UHGV-1500084_44	PF13240,TIGR04165	N/A	N/A	N/A	N/A
KOfam	UHGV-1500084_45	K19370	44.1	0.000000000002	DNAJC22; DnaJ homolog subfamily C member 22	N/A
PHROG	UHGV-1500084_45	phrog_10292	81.2	5.3e-24	N/A	unknown function
UniRef90	UHGV-1500084_45	UniRef90_UPI0009EA0767	114.0	5.78e-30	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1500084_45	428125.CLOLEP_03735	97.1	4.79e-24	TM2 domain	N/A
Pfam	UHGV-1500084_45	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-1500084_45	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-1500084_45	COG2314	N/A	N/A	N/A	N/A
PHROG	UHGV-1500084_46	phrog_1194	67.7	1.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-1500084_46	1280692.AUJL01000025_gene2069	53.9	0.000000151	N/A	N/A
structural_annotation	UHGV-1500084_46	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1500084_47	phrog_13879	287.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1500084_47	1120746.CCNL01000014_gene2107	339.0	0	N/A	N/A
structural_annotation	UHGV-1500084_47	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1500084_48	phrog_18725	50.1	0.000000000000047	N/A	unknown function
eggNOG-mapper	UHGV-1500084_48	1120746.CCNL01000014_gene2212	72.0	0.0000000000000222	N/A	N/A
PHROG	UHGV-1500084_49	phrog_1800	95.9	6.9e-29	tail collar fiber protein	tail
UniRef90	UHGV-1500084_49	UniRef90_A0A1M4ZCA1	132.0	1.53e-35	Microcystin-dependent protein	N/A
eggNOG-mapper	UHGV-1500084_49	1254432.SCE1572_26840	144.0	1.18e-38	tail collar domain protein	N/A
COG	UHGV-1500084_49	COG4675	N/A	N/A	Phage tail collar domain	N/A
eggNOG-mapper	UHGV-1500084_50	1297617.JPJD01000099_gene2171	78.2	0.00000000000496	Collagen triple helix repeat protein	N/A
COG	UHGV-1500084_50	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
structural_annotation	UHGV-1500084_52	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-1500084_54	phrog_199	91.9	6.7e-27	holin	lysis
UniRef90	UHGV-1500084_54	UniRef90_UPI00189CC356	145.0	2.14959e-42	phage holin family protein	N/A
eggNOG-mapper	UHGV-1500084_54	908340.HMPREF9406_0179	141.0	1.49995e-41	toxin secretion phage lysis holin	N/A
Pfam	UHGV-1500084_54	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1500084_54	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1500084_54	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1500084_54	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1500084_55	K01447	108.0	1.1e-31	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1500084_55	phrog_670	142.7	3.00018e-42	endolysin	lysis
UniRef90	UHGV-1500084_55	UniRef90_UPI0013DF8F07	269.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1500084_55	1203606.HMPREF1526_02025	245.0	0	Ami_2	N/A
Pfam	UHGV-1500084_55	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1500084_55	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1500084_55	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
UniRef90	UHGV-1500084_56	UniRef90_A0A1Q9JGI6	123.0	2.5e-33	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1500084_56	1118055.CAGU01000028_gene99	99.0	1.47e-24	N/A	N/A
structural_annotation	UHGV-1500084_56	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
Pfam	UHGV-1500084_59	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
Pfam	UHGV-1500084_59	PF20124	N/A	N/A	N/A	DUF6514