UHGV-1500620 (vOTU-107560)

Viral Genome: UHGV-1500620

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1500620
vOTU ID	vOTU-107560
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0266693
Associated BioSample	SAMEA2737948
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.66 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9709
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.83
Jumbo phage	No

Genome content
Genome length (bp)	33,917
GC content	40.61%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	88%
Average CDS length (bps)	612.12
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 83.66)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1500620_1	K11063	64.3	4.6e-19	tcdAB; toxin A/B	N/A
PHROG	UHGV-1500620_1	phrog_7854	92.5	9.7e-37	endolysin	lysis
UniRef90	UHGV-1500620_1	UniRef90_A0A6L9HGM4	134.0	1.51e-33	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-1500620_1	665950.HMPREF1025_01328	153.0	2.26996e-41	CHAP domain	N/A
Pfam	UHGV-1500620_1	PF01473	N/A	N/A	Putative cell wall binding repeat	Choline_bind_1
Pfam	UHGV-1500620_1	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-1500620_1	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1500620_1	PF19127,PF05382,TIGR04035,NF008096,COG5263,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-1500620_2	phrog_297	50.3	0.000000000000041	holin	lysis
UniRef90	UHGV-1500620_2	UniRef90_J6HE40	84.7	4.6e-19	Holin, phage phi LC3 family	N/A
eggNOG-mapper	UHGV-1500620_2	936375.HMPREF1152_1091	84.7	7.71e-20	Bacteriophage holin	N/A
Pfam	UHGV-1500620_2	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1500620_2	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1500620_2	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1500620_2	PF04531,COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-1500620_6	phrog_24103	57.7	1.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-1500620_6	420247.Msm_1688	70.5	0.000000000146	N/A	N/A
Pfam	UHGV-1500620_6	PF19079	N/A	N/A	Collagen-flanked surface repeat	CFSR
structural_annotation	UHGV-1500620_7	PF16640,TIGR04488	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1500620_8	871968.DESME_08840	104.0	2.05e-19	N/A	N/A
UniRef90	UHGV-1500620_11	UniRef90_UPI001F43F8A6	97.8	1.55e-17	N/A	N/A
eggNOG-mapper	UHGV-1500620_11	1232449.BAHV02000016_gene1816	192.0	0	N/A	N/A
structural_annotation	UHGV-1500620_11	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-1500620_14	phrog_267	79.6	4e-23	major head protein	head and packaging
UniRef90	UHGV-1500620_14	UniRef90_A0A0F0LWH2	127.0	2.22e-31	p22 coat protein-gene 5	N/A
eggNOG-mapper	UHGV-1500620_14	665956.HMPREF1032_03906	243.0	0	P22 coat protein-protein 5 domain protein	N/A
structural_annotation	UHGV-1500620_14	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1500620_17	phrog_156	79.2	8.7e-26	portal protein	head and packaging
eggNOG-mapper	UHGV-1500620_17	1232449.BAHV02000016_gene1822	340.0	0	N/A	N/A
structural_annotation	UHGV-1500620_17	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1500620_19	phrog_38	363.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1500620_19	UniRef90_A0A845QMQ7	598.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1500620_19	755731.Clo1100_2438	440.0	0	TIGRFAM Phage	N/A
Pfam	UHGV-1500620_19	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1500620_19	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1500620_19	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1500620_19	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1500620_19	PF17289,PF05876,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1500620_21	phrog_4264	48.2	0.00000000000018	N/A	unknown function
Pfam	UHGV-1500620_25	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-1500620_25	PF10723,NF040976,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-1500620_28	K03111	52.0	0.000000000000019	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1500620_28	phrog_44	56.8	4.1e-16	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500620_28	UniRef90_B9EBK8	63.5	0.000000000629	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1500620_28	458233.MCCL_0912	63.5	0.000000000105	single-stranded DNA-binding protein	N/A
Pfam	UHGV-1500620_28	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-1500620_28	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1500620_30	PF00436	N/A	N/A	Single-strand binding protein family	SSB
PHROG	UHGV-1500620_32	phrog_3934	46.4	0.00000000000069	N/A	unknown function
PHROG	UHGV-1500620_35	phrog_801	75.0	9.7e-22	endolysin; inhibits RNA polymerase	lysis
Pfam	UHGV-1500620_35	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
PHROG	UHGV-1500620_37	phrog_98	79.4	4.6e-23	N/A	unknown function
UniRef90	UHGV-1500620_37	UniRef90_C9BWS5	77.8	5.05e-16	N/A	N/A
eggNOG-mapper	UHGV-1500620_37	565664.EFXG_03933	77.8	8.47e-17	YopX protein	N/A
Pfam	UHGV-1500620_37	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1500620_37	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1500620_37	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1500620_38	phrog_918	128.2	1.8e-38	N/A	unknown function
UniRef90	UHGV-1500620_38	UniRef90_UPI0010308CF9	127.0	2.08e-36	N/A	N/A
eggNOG-mapper	UHGV-1500620_38	1321782.HMPREF1986_00359	123.0	1.17e-35	N/A	N/A
Pfam	UHGV-1500620_38	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-1500620_38	PF19791	N/A	N/A	N/A	N/A
KOfam	UHGV-1500620_40	K01160	75.7	9.5e-22	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1500620_40	phrog_140	141.1	4.60046e-42	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500620_40	UniRef90_UPI000353C165	124.0	6.35e-34	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1500620_40	883110.HMPREF9260_00672	124.0	1.06e-34	holliday junction resolvase	N/A
Pfam	UHGV-1500620_40	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1500620_40	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
PHROG	UHGV-1500620_41	phrog_9804	65.0	1.1e-18	N/A	unknown function
Pfam	UHGV-1500620_41	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
PHROG	UHGV-1500620_42	phrog_5708	220.6	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500620_42	UniRef90_A0A7U9GKG7	181.0	0	Phage replication initiation protein	N/A
eggNOG-mapper	UHGV-1500620_42	1196322.A370_02071	181.0	0	DnaD domain protein	N/A
COG	UHGV-1500620_42	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1500620_42	PF09681,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-1500620_44	K03111	114.9	1.1e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1500620_44	phrog_44	129.4	2.8e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500620_44	UniRef90_A0A2K8TFU5	109.0	5.16e-28	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1500620_44	1111134.HMPREF1253_0399	101.0	1.48e-25	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1500620_44	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1500620_44	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1500620_44	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1500620_44	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1500620_44	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1500620_45	K06167	43.4	0.000000000004	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1500620_45	phrog_392	124.2	1.3e-36	metal-dependent hydrolase	other
UniRef90	UHGV-1500620_45	UniRef90_R6N9D6	186.0	0	Metallo-beta-lactamase domain protein	N/A
eggNOG-mapper	UHGV-1500620_45	665956.HMPREF1032_03101	179.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-1500620_45	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-1500620_45	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1500620_45	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
KOfam	UHGV-1500620_46	K07455	179.1	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1500620_46	phrog_148	205.4	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500620_46	UniRef90_A0A374N9W0	303.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-1500620_46	742740.HMPREF9474_03488	290.0	0	RecT family	N/A
Pfam	UHGV-1500620_46	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1500620_46	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1500620_46	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1500620_46	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1500620_47	phrog_674	106.4	2.1e-31	N/A	unknown function
UniRef90	UHGV-1500620_47	UniRef90_A0A374N9T8	110.0	1.5e-24	N/A	N/A
eggNOG-mapper	UHGV-1500620_47	641112.ACOK01000103_gene524	95.1	6.96e-21	N/A	N/A
Pfam	UHGV-1500620_47	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1500620_47	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1500620_48	phrog_419	110.4	1.8e-32	N/A	unknown function
eggNOG-mapper	UHGV-1500620_48	1123312.KB904569_gene346	91.7	2.53e-23	N/A	N/A
structural_annotation	UHGV-1500620_48	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-1500620_49	phrog_27197	49.0	0.00000000000011	N/A	unknown function
eggNOG-mapper	UHGV-1500620_49	645991.Sgly_0315	75.9	0.00000000000000438	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1500620_49	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A