UHGV-1501447 (vOTU-062953)

Viral Genome: UHGV-1501447

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1501447
vOTU ID	vOTU-062953
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0323393
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.02 (High-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9741
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.37
Jumbo phage	No

Genome content
Genome length (bp)	39,004
GC content	29.44%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	61
CDS density	94%
Average CDS length (bps)	598.28
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.02)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1501447_1	K14059	135.1	8.3e-40	int; integrase	N/A
PHROG	UHGV-1501447_1	phrog_1	150.2	1.68156e-44	integrase	integration and excision
UniRef90	UHGV-1501447_1	UniRef90_R6DVW0	171.0	0	Phage integrase	N/A
eggNOG-mapper	UHGV-1501447_1	642492.Clole_2628	79.7	0.000000000000147	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1501447_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1501447_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1501447_1	PF00589,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1501447_2	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-1501447_3	K22299	46.3	0.00000000000087	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1501447_3	phrog_2967	69.4	5.8e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1501447_3	UniRef90_UPI000F8F6018	99.8	1.5e-24	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1501447_3	1201292.DR75_340	92.4	3.13e-22	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1501447_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1501447_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1501447_3	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1501447_4	UniRef90_UPI000C076A69	81.3	1.15e-18	N/A	N/A
eggNOG-mapper	UHGV-1501447_4	562981.HMPREF0428_01421	57.0	0.000000000869	N/A	N/A
Pfam	UHGV-1501447_4	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-1501447_4	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1501447_4	PF05339,MF_00535,NF002773,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1501447_8	phrog_253	101.9	6.1e-30	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1501447_8	UniRef90_A0A521X8B7	85.5	6.28e-18	Siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-1501447_8	686340.Metal_4000	80.9	6.35e-17	PFAM Siphovirus Gp157	N/A
Pfam	UHGV-1501447_8	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1501447_8	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-1501447_9	phrog_14970	258.9	0	N/A	unknown function
UniRef90	UHGV-1501447_9	UniRef90_A0A3P6JH63	188.0	0	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-1501447_9	469604.HMPREF0946_00830	206.0	0	DNA recombination	N/A
COG	UHGV-1501447_9	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1501447_9	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-1501447_10	K03111	142.7	3.59994e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1501447_10	phrog_44	147.2	8.68805e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1501447_10	UniRef90_R6XT61	192.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1501447_10	1291050.JAGE01000001_gene1719	163.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1501447_10	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1501447_10	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1501447_10	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1501447_10	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1501447_10	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1501447_11	phrog_72	67.8	1.7e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1501447_11	445972.ANACOL_00148	65.5	0.0000000000427	N/A	N/A
Pfam	UHGV-1501447_11	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-1501447_11	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1501447_12	phrog_7566	49.7	0.000000000000024	N/A	unknown function
eggNOG-mapper	UHGV-1501447_12	1118057.CAGX01000020_gene1648	60.5	0.00000000024	N/A	N/A
PHROG	UHGV-1501447_15	phrog_16304	104.2	1.8e-30	N/A	unknown function
UniRef90	UHGV-1501447_15	UniRef90_B0PEW0	117.0	5.53e-28	N/A	N/A
eggNOG-mapper	UHGV-1501447_15	445972.ANACOL_03338	117.0	9.28e-29	DnaD domain protein	N/A
Pfam	UHGV-1501447_15	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1501447_15	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1501447_15	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-1501447_16	phrog_9804	102.7	3.3e-30	N/A	unknown function
UniRef90	UHGV-1501447_16	UniRef90_A0A1I2QMA2	176.0	0	Loader and inhibitor of phage G40P	N/A
eggNOG-mapper	UHGV-1501447_16	1499683.CCFF01000013_gene503	174.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1501447_16	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1501447_16	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1501447_17	phrog_1123	56.2	4.6e-16	N/A	unknown function
UniRef90	UHGV-1501447_17	UniRef90_UPI0012E37870	61.6	0.000000000351	DNA gyrase	N/A
eggNOG-mapper	UHGV-1501447_17	445972.ANACOL_03346	57.8	0.0000000017	N/A	N/A
structural_annotation	UHGV-1501447_17	PF03551,TIGR02719,COG1695	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1501447_18	1304866.K413DRAFT_4602	61.2	0.0000000000295	N/A	N/A
PHROG	UHGV-1501447_19	phrog_4601	42.3	0.0000000000099	N/A	unknown function
PHROG	UHGV-1501447_20	phrog_244	54.7	0.0000000000000024	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1501447_20	1280692.AUJL01000044_gene2344	118.0	3.98e-33	N/A	N/A
structural_annotation	UHGV-1501447_20	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1501447_22	PF09871,TIGR00739,COG4014	N/A	N/A	N/A	N/A
PHROG	UHGV-1501447_23	phrog_19831	60.7	2.7e-17	N/A	unknown function
UniRef90	UHGV-1501447_24	UniRef90_A0A1Q6L7Q8	146.0	1.4013e-44	NOB1_Zn_bind domain-containing protein	N/A
Pfam	UHGV-1501447_24	PF08772	N/A	N/A	Nin one binding (NOB1) Zn-ribbon like	NOB1_Zn_bind
structural_annotation	UHGV-1501447_24	PF09947	N/A	N/A	N/A	N/A
PHROG	UHGV-1501447_25	phrog_8684	78.9	1.2e-27	N/A	unknown function
UniRef90	UHGV-1501447_25	UniRef90_A0A8I0HKU3	88.6	4.39e-20	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1501447_25	411477.PARMER_02066	76.3	9.54e-16	YopX protein	N/A
Pfam	UHGV-1501447_25	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1501447_25	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1501447_25	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1501447_30	phrog_17260	43.4	0.0000000000049	N/A	unknown function
eggNOG-mapper	UHGV-1501447_30	1232449.BAHV02000018_gene1537	147.0	1.06499e-43	N/A	N/A
structural_annotation	UHGV-1501447_32	TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-1501447_34	K18843	50.9	0.000000000000033	hicB; antitoxin HicB	N/A
PHROG	UHGV-1501447_34	phrog_497	70.0	4.2e-20	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1501447_34	UniRef90_A0A1Q6K264	148.0	1.61149e-43	HicB-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1501447_34	866776.HMPREF9321_1692	121.0	8.68e-34	Toxin-antitoxin system, antitoxin component, HicB family	N/A
Pfam	UHGV-1501447_34	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-1501447_34	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-1501447_34	PF15919,COG1598	N/A	N/A	N/A	N/A
PHROG	UHGV-1501447_35	phrog_119	57.9	1.6e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1501447_35	UniRef90_R7FFL5	194.0	0	Prophage L54a HNH endonuclease family protein	N/A
eggNOG-mapper	UHGV-1501447_35	935948.KE386495_gene1338	57.0	0.0000000124	HNH nucleases	N/A
Pfam	UHGV-1501447_35	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1501447_35	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1501447_37	phrog_5110	97.3	9.6e-29	terminase small subunit	head and packaging
UniRef90	UHGV-1501447_37	UniRef90_A0A6A7KA92	93.6	1.22e-21	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-1501447_37	349161.Dred_2608	72.8	0.000000000000019	N/A	N/A
structural_annotation	UHGV-1501447_37	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1501447_38	phrog_9	248.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1501447_38	UniRef90_UPI0013578A69	728.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-1501447_38	1232452.BAIB02000007_gene1629	370.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-1501447_38	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1501447_38	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1501447_38	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1501447_38	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1501447_39	phrog_12	83.9	1.4e-24	portal protein	head and packaging
UniRef90	UHGV-1501447_39	UniRef90_R7FFK9	480.0	0	HK97 family phage portal protein	N/A
eggNOG-mapper	UHGV-1501447_39	1265845.PWEIH_00620	141.0	3.32e-35	Phage portal protein	N/A
Pfam	UHGV-1501447_39	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1501447_39	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1501447_39	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1501447_40	K01358	128.8	5.6e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1501447_40	phrog_94	199.4	0	head maturation protease	head and packaging
UniRef90	UHGV-1501447_40	UniRef90_R7FHW4	391.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1501447_40	1232452.BAIB02000007_gene1626	174.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1501447_40	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1501447_40	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1501447_40	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1501447_41	phrog_10	75.5	7e-22	major head protein	head and packaging
UniRef90	UHGV-1501447_41	UniRef90_R5M278	389.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-1501447_41	1232452.BAIB02000007_gene1625	337.0	0	Phage capsid family	N/A
NCBIFam	UHGV-1501447_41	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1501447_41	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1501447_41	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1501447_42	phrog_3673	69.8	1.9e-20	Arc-like repressor	transcription regulation
UniRef90	UHGV-1501447_42	UniRef90_UPI001EEA4E79	62.8	0.000000000024	termination factor Rho	N/A
eggNOG-mapper	UHGV-1501447_42	1145276.T479_19965	64.3	0.000000000000945	N/A	N/A
UniRef90	UHGV-1501447_44	UniRef90_A0A7C6J040	179.0	0	Phage head closure protein	N/A
structural_annotation	UHGV-1501447_44	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1501447_45	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-1501447_46	UniRef90_R7FK52	171.0	0	Phage protein HK97 gp10 family	N/A
structural_annotation	UHGV-1501447_46	TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1501447_47	phrog_88	64.7	1.4e-18	major tail protein	tail
UniRef90	UHGV-1501447_47	UniRef90_R5M2L7	246.0	0	Phi13 family phage major tail protein	N/A
eggNOG-mapper	UHGV-1501447_47	1302286.BAOT01000067_gene2178	54.7	0.00000256	N/A	N/A
NCBIFam	UHGV-1501447_47	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1501447_47	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1501447_48	PF11836	N/A	N/A	N/A	N/A
Pfam	UHGV-1501447_49	PF13248	N/A	N/A	zinc-ribbon domain	zf-ribbon_3
KOfam	UHGV-1501447_51	K20283	57.9	2.1e-17	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-1501447_51	phrog_1293	418.5	0	tail length tape measure protein	tail
UniRef90	UHGV-1501447_51	UniRef90_R7FHV4	622.0	0	Phage tail tape measure protein family	N/A
eggNOG-mapper	UHGV-1501447_51	536232.CLM_2046	376.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-1501447_51	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1501447_51	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1501447_51	COG1340	N/A	N/A	N/A	N/A
PHROG	UHGV-1501447_53	phrog_33	68.9	1.1e-19	distal tail protein Dit	tail
UniRef90	UHGV-1501447_53	UniRef90_UPI00189CFC07	222.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1501447_53	1399942.U3PIW9_9CAUD	66.6	0.000000000175	Phage tail protein	N/A
structural_annotation	UHGV-1501447_53	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1501447_54	phrog_1067	295.7	0	minor head protein	head and packaging
eggNOG-mapper	UHGV-1501447_54	1399942.U3PFX4_9CAUD	286.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-1501447_54	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1501447_54	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
PHROG	UHGV-1501447_55	phrog_372	299.6	0	tail protein	tail
UniRef90	UHGV-1501447_55	UniRef90_A0A8F2F0P6	127.0	1.85e-27	N/A	N/A
eggNOG-mapper	UHGV-1501447_55	1035189.HMPREF9954_0321	108.0	7.63e-22	the current gene model (or a revised gene model) may contain a frame shift	N/A
Pfam	UHGV-1501447_55	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-1501447_55	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1501447_55	PF05895,MF_04116,NF010681,COG3291,COG5608	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1501447_57	PF16938	N/A	N/A	N/A	N/A
KOfam	UHGV-1501447_58	K01446	106.4	2.5e-31	PGRP; peptidoglycan recognition protein	N/A
PHROG	UHGV-1501447_58	phrog_1493	156.3	0	endolysin	lysis
UniRef90	UHGV-1501447_58	UniRef90_A0A3D1RJG1	441.0	0	Peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1501447_58	553973.CLOHYLEM_04450	191.0	0	Ami_2	N/A
Pfam	UHGV-1501447_58	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1501447_58	PF09374	N/A	N/A	Predicted Peptidoglycan domain	PG_binding_3
Pfam	UHGV-1501447_58	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1501447_58	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1501447_58	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-1501447_59	phrog_1281	82.5	2.8e-24	N/A	unknown function
UniRef90	UHGV-1501447_59	UniRef90_UPI001D14EC7B	114.0	6.38e-28	N/A	N/A
eggNOG-mapper	UHGV-1501447_59	1449342.JQMR01000001_gene977	89.4	3.83e-19	N/A	N/A
COG	UHGV-1501447_59	COG3600	N/A	N/A	N/A	N/A
KOfam	UHGV-1501447_61	K19449	61.8	1.2e-17	sinR; XRE family transcriptional regulator, master regulator for biofilm formation	N/A
PHROG	UHGV-1501447_61	phrog_8	46.5	0.00000000000073	transcriptional regulator	transcription regulation
UniRef90	UHGV-1501447_61	UniRef90_R5YVI1	124.0	9.07e-35	HTH-type transcriptional regulator SinR	N/A
eggNOG-mapper	UHGV-1501447_61	981383.AEWH01000008_gene3665	60.5	0.000000000266	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-1501447_61	retron_type_VI_hth_cluster2_1	57.1	4.2e-16	N/A	Retron
Pfam	UHGV-1501447_61	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1501447_61	PF09388	N/A	N/A	Spo0E like sporulation regulatory protein	SpoOE-like
COG	UHGV-1501447_61	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1501447_61	PF13443,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A