UHGV-1504105 (vOTU-072389)

Viral Genome: UHGV-1504105

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1504105
vOTU ID	vOTU-072389
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0240865
Associated BioSample	SAMN00083686
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.21 (High-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9705
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35
Jumbo phage	No

Genome content
Genome length (bp)	35,350
GC content	58.25%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	92%
Average CDS length (bps)	639.41
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 92.21)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1504105_1	phrog_1535	171.8	0	tail length tape measure protein	tail
UniRef90	UHGV-1504105_1	UniRef90_A0A1C5N853	84.0	0.000000000000702	Phage-related protein	N/A
eggNOG-mapper	UHGV-1504105_1	665956.HMPREF1032_03057	125.0	1.09e-26	tape measure	N/A
COG	UHGV-1504105_1	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1504105_2	phrog_706	100.6	1.5e-29	N/A	unknown function
UniRef90	UHGV-1504105_2	UniRef90_UPI0013141117	370.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1504105_2	665956.HMPREF1032_03058	242.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1504105_2	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1504105_2	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1504105_3	phrog_11299	86.5	1.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-1504105_3	665956.HMPREF1032_03059	125.0	4.41e-35	N/A	N/A
structural_annotation	UHGV-1504105_3	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1504105_4	phrog_3099	68.3	1.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-1504105_4	665956.HMPREF1032_03060	247.0	0	N/A	N/A
structural_annotation	UHGV-1504105_4	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1504105_5	phrog_3266	75.8	4.8e-22	tail completion	connector
eggNOG-mapper	UHGV-1504105_5	663278.Ethha_0492	61.2	0.00000000051	N/A	N/A
structural_annotation	UHGV-1504105_5	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1504105_6	phrog_556	96.0	2.3e-28	minor head protein	head and packaging
UniRef90	UHGV-1504105_6	UniRef90_UPI001958E7C1	229.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1504105_6	665956.HMPREF1032_03062	176.0	0	Minor capsid protein	N/A
Pfam	UHGV-1504105_6	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1504105_6	PF11114	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1504105_7	411471.SUBVAR_06991	57.4	0.00000000347	N/A	N/A
Pfam	UHGV-1504105_7	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1504105_7	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-1504105_8	phrog_541	56.7	3.8e-16	head-tail adaptor	connector
eggNOG-mapper	UHGV-1504105_8	663278.Ethha_0495	76.3	5.21e-16	N/A	N/A
PHROG	UHGV-1504105_9	phrog_10	181.8	0	major head protein	head and packaging
UniRef90	UHGV-1504105_9	UniRef90_A0A367GHJ2	760.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1504105_9	1120998.AUFC01000030_gene2236	526.0	0	Phage capsid family	N/A
Pfam	UHGV-1504105_9	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1504105_9	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1504105_9	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1504105_9	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1504105_10	phrog_194	59.5	4e-17	head scaffolding protein	head and packaging
UniRef90	UHGV-1504105_10	UniRef90_UPI00195B7610	163.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1504105_10	663278.Ethha_0497	159.0	0	N/A	N/A
Pfam	UHGV-1504105_10	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1504105_10	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1504105_13	phrog_581	345.5	0	minor head protein	head and packaging
UniRef90	UHGV-1504105_13	UniRef90_A0A1C5NZK4	571.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1504105_13	748224.HMPREF9436_03339	461.0	0	N/A	N/A
Pfam	UHGV-1504105_13	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1504105_13	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1504105_13	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1504105_14	phrog_533	359.7	0	portal protein	head and packaging
UniRef90	UHGV-1504105_14	UniRef90_A0A367GFE3	916.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-1504105_14	663278.Ethha_0090	568.0	0	N/A	N/A
Pfam	UHGV-1504105_14	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1504105_14	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1504105_15	K06909	134.3	1.1e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1504105_15	phrog_2	159.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1504105_15	UniRef90_A0A367GH60	865.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1504105_15	1120746.CCNL01000014_gene2093	541.0	0	DNA packaging	N/A
Pfam	UHGV-1504105_15	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1504105_15	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1504105_15	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1504105_15	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1504105_15	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1504105_16	phrog_606	88.5	6.4e-26	terminase small subunit	head and packaging
UniRef90	UHGV-1504105_16	UniRef90_UPI00195648BB	181.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1504105_16	397290.C810_05185	159.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-1504105_16	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1504105_16	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1504105_17	K03071	60.4	3.3e-17	secB; preprotein translocase subunit SecB	N/A
PHROG	UHGV-1504105_17	phrog_21664	45.9	0.000000000001	N/A	unknown function
UniRef90	UHGV-1504105_17	UniRef90_A0A3E2TBE1	122.0	3.86e-33	Preprotein translocase subunit SecB	N/A
eggNOG-mapper	UHGV-1504105_17	478749.BRYFOR_09873	80.5	1.77e-17	Preprotein translocase subunit SecB	N/A
Pfam	UHGV-1504105_17	PF02556	N/A	N/A	Preprotein translocase subunit SecB	SecB
COG	UHGV-1504105_17	COG1952	N/A	N/A	Preprotein translocase subunit SecB	N/A
structural_annotation	UHGV-1504105_17	PF02556,MF_00821,NF004391,COG1952	N/A	N/A	N/A	N/A
PHROG	UHGV-1504105_20	phrog_36	80.1	2.9e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-1504105_20	UniRef90_A0A353BRJ1	100.0	2.24e-24	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1504105_20	411471.SUBVAR_05843	138.0	2.77e-40	N/A	N/A
structural_annotation	UHGV-1504105_20	PF04545,MF_00674,NF005248,COG1595	N/A	N/A	N/A	N/A
KOfam	UHGV-1504105_24	K06919	120.1	1.6e-35	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-1504105_24	phrog_1829	697.2	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1504105_24	UniRef90_A0A2V2F8P9	1154.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-1504105_24	748224.HMPREF9436_01462	825.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-1504105_24	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-1504105_24	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-1504105_24	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-1504105_24	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-1504105_24	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-1504105_24	PF08706,PF05272,PF02257,MF_04000,NF011296,COG3378,COG4983	N/A	N/A	N/A	N/A
PHROG	UHGV-1504105_25	phrog_378	44.0	0.000000000004	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1504105_25	997346.HMPREF9374_1140	59.7	0.00000000697	N/A	N/A
structural_annotation	UHGV-1504105_25	PF05037	N/A	N/A	N/A	N/A
KOfam	UHGV-1504105_26	K18959	188.0	0	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	N/A
PHROG	UHGV-1504105_26	phrog_16	201.5	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1504105_26	UniRef90_A0A316L8C8	468.0	0	Helicase ATP-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1504105_26	748224.HMPREF9436_01460	438.0	0	Type III restriction protein res subunit	N/A
PADLOC	UHGV-1504105_26	mREase_IV_00005	47.2	0.00000000000019	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1504105_26	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1504105_26	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1504105_26	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1504105_27	PF03838,MF_00130,TIGR00648,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-1504105_28	phrog_1366	238.1	0	N/A	unknown function
UniRef90	UHGV-1504105_28	UniRef90_UPI00164C2BFB	322.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1504105_28	748224.HMPREF9436_01458	308.0	0	AAA domain	N/A
Pfam	UHGV-1504105_28	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-1504105_28	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-1504105_28	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1504105_31	phrog_1733	53.2	3.4e-16	N/A	unknown function
UniRef90	UHGV-1504105_31	UniRef90_UPI001967A828	204.0	0	cell envelope integrity protein TolA	N/A
eggNOG-mapper	UHGV-1504105_31	665956.HMPREF1032_03597	245.0	0	DNA binding	N/A
COG	UHGV-1504105_31	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1504105_33	PF12957	N/A	N/A	N/A	N/A
UniRef90	UHGV-1504105_35	UniRef90_A0A367GHD7	160.0	0	HTH_17 domain-containing protein	N/A
Pfam	UHGV-1504105_35	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
KOfam	UHGV-1504105_38	K22300	44.9	0.0000000000022	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1504105_38	phrog_8	45.0	0.0000000000022	transcriptional regulator	transcription regulation
UniRef90	UHGV-1504105_38	UniRef90_A0A367GFH2	102.0	2.35e-27	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1504105_38	796942.HMPREF9623_01770	55.5	0.0000000405	N/A	N/A
Pfam	UHGV-1504105_38	PF07022	N/A	N/A	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
COG	UHGV-1504105_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1504105_38	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1504105_39	K01356	146.5	2.70451e-43	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1504105_39	phrog_4	118.1	8.9e-35	transcriptional repressor	transcription regulation
UniRef90	UHGV-1504105_39	UniRef90_A0A1Q6T3E1	293.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1504105_39	411483.FAEPRAA2165_03041	174.0	0	N/A	N/A
Pfam	UHGV-1504105_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1504105_39	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1504105_39	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1504105_39	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-1504105_40	K07448	128.2	6.6e-38	mrr; restriction system protein	N/A
PHROG	UHGV-1504105_40	phrog_19856	55.6	8.3e-16	N/A	unknown function
UniRef90	UHGV-1504105_40	UniRef90_A0A367GFG0	227.0	0	Restriction endonuclease	N/A
eggNOG-mapper	UHGV-1504105_40	397287.C807_03320	151.0	1.12104e-44	Restriction endonuclease	N/A
PADLOC	UHGV-1504105_40	ZorD1_00005	77.9	1.3e-22	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-1504105_40	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-1504105_40	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
KOfam	UHGV-1504105_41	K19370	42.2	0.0000000000073	DNAJC22; DnaJ homolog subfamily C member 22	N/A
PHROG	UHGV-1504105_41	phrog_10292	59.8	3.8e-18	N/A	unknown function
UniRef90	UHGV-1504105_41	UniRef90_UPI001916763D	120.0	2.82e-32	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1504105_41	665956.HMPREF1032_00562	107.0	7.57e-28	TM2 domain	N/A
Pfam	UHGV-1504105_41	PF13248	N/A	N/A	zinc-ribbon domain	zf-ribbon_3
Pfam	UHGV-1504105_41	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-1504105_41	COG2314	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1504105_41	PF05154,PF12773,MF_00788,NF003161	N/A	N/A	N/A	N/A
KOfam	UHGV-1504105_42	K14059	192.8	0	int; integrase	N/A
PHROG	UHGV-1504105_42	phrog_1	196.8	0	integrase	integration and excision
UniRef90	UHGV-1504105_42	UniRef90_UPI00195B6EEA	457.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1504105_42	1235797.C816_00779	177.0	0	Phage integrase family	N/A
Pfam	UHGV-1504105_42	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1504105_42	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1504105_42	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1504105_42	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1504105_43	phrog_1129	63.0	3.4e-18	holin	lysis
UniRef90	UHGV-1504105_43	UniRef90_A0A367FT42	174.0	0	Enolase	N/A
eggNOG-mapper	UHGV-1504105_43	1007096.BAGW01000036_gene2663	114.0	6.72e-32	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1504105_43	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1504105_43	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1504105_44	phrog_1863	69.9	2.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-1504105_44	665956.HMPREF1032_03922	108.0	7.69e-30	N/A	N/A
KOfam	UHGV-1504105_45	K07273	180.0	0	acm; lysozyme	N/A
PHROG	UHGV-1504105_45	phrog_291	160.6	0	endolysin	lysis
UniRef90	UHGV-1504105_45	UniRef90_A0A367G061	520.0	0	Peptidase_M23 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-1504105_45	411471.SUBVAR_06927	317.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1504105_45	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-1504105_45	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1504105_45	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1504105_45	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1504105_46	phrog_24267	58.4	1.5e-16	N/A	unknown function
UniRef90	UHGV-1504105_46	UniRef90_G4Q8U0	70.1	0.0000000000927	Side tail fiber protein from lambdoid prophage Rac	N/A
eggNOG-mapper	UHGV-1504105_46	508419.F8J176_9CAUD	114.0	5.36e-26	peptidoglycan catabolic process	N/A
Pfam	UHGV-1504105_46	PF11133	N/A	N/A	Head fiber protein	Phage_head_fibr
Pfam	UHGV-1504105_46	PF03406	N/A	N/A	Phage tail fibre repeat	Phage_fiber_2
PHROG	UHGV-1504105_47	phrog_19111	49.4	3e-25	N/A	unknown function
eggNOG-mapper	UHGV-1504105_47	756499.Desde_3162	102.0	1.68e-21	nuclear chromosome segregation	N/A
COG	UHGV-1504105_47	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-1504105_49	phrog_13589	184.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1504105_49	428125.CLOLEP_01434	231.0	0	N/A	N/A
PHROG	UHGV-1504105_50	phrog_31538	47.1	0.00000000000041	N/A	unknown function
eggNOG-mapper	UHGV-1504105_50	428125.CLOLEP_01433	57.0	0.00000000229	N/A	N/A
structural_annotation	UHGV-1504105_51	PF12245	N/A	N/A	N/A	N/A