UHGV-1505381 (vOTU-061137)

Viral Genome: UHGV-1505381

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1505381
vOTU ID	vOTU-061137
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0229879
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.976
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.31
Jumbo phage	No

Genome content
Genome length (bp)	33,292
GC content	39.23%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	94%
Average CDS length (bps)	539.17
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1505381_1	NF040990	N/A	N/A	N/A	N/A
PHROG	UHGV-1505381_6	phrog_24368	43.9	0.0000000000029	N/A	unknown function
PHROG	UHGV-1505381_9	phrog_7566	78.2	6.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-1505381_9	1410650.JHWL01000003_gene2846	52.4	0.000000431	N/A	N/A
Pfam	UHGV-1505381_12	PF14058	N/A	N/A	PcfK-like protein	PcfK
structural_annotation	UHGV-1505381_12	PF14058	N/A	N/A	N/A	N/A
PHROG	UHGV-1505381_13	phrog_8470	233.5	0	N/A	unknown function
UniRef90	UHGV-1505381_13	UniRef90_J6H8Z2	511.0	0	PcfJ-like protein	N/A
eggNOG-mapper	UHGV-1505381_13	936375.HMPREF1152_0668	511.0	0	PcfJ-like protein	N/A
Pfam	UHGV-1505381_13	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1505381_13	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1505381_14	phrog_15609	161.8	0	N/A	unknown function
UniRef90	UHGV-1505381_14	UniRef90_J4W6X5	353.0	0	PF11300 family protein	N/A
eggNOG-mapper	UHGV-1505381_14	936375.HMPREF1152_0669	353.0	0	N/A	N/A
Pfam	UHGV-1505381_14	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-1505381_14	COG0188	N/A	N/A	DNA gyrase/topoisomerase IV, subunit A	N/A
structural_annotation	UHGV-1505381_14	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-1505381_17	phrog_2245	62.6	5.8e-18	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-1505381_17	UniRef90_A0A2S0L5I7	146.0	7.84727e-44	MazG domain-containing protein	N/A
Pfam	UHGV-1505381_17	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
UniRef90	UHGV-1505381_18	UniRef90_UPI000403EAB4	51.2	0.00000155	N/A	N/A
Pfam	UHGV-1505381_18	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-1505381_19	phrog_98	93.4	2e-27	N/A	unknown function
UniRef90	UHGV-1505381_19	UniRef90_E5BEY7	112.0	2.25e-29	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1505381_19	1220589.CD32_00355	86.7	3.36e-20	YopX protein	N/A
Pfam	UHGV-1505381_19	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1505381_19	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1505381_19	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-1505381_21	K03111	148.8	5.32493e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1505381_21	phrog_44	143.9	9.20653e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1505381_21	UniRef90_A0A2S0L5J3	265.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1505381_21	936375.HMPREF1152_1764	213.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1505381_21	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1505381_21	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1505381_21	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1505381_21	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1505381_21	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1505381_23	phrog_33451	71.0	6.9e-21	N/A	unknown function
structural_annotation	UHGV-1505381_23	PF04448	N/A	N/A	N/A	N/A
PHROG	UHGV-1505381_24	phrog_3584	178.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1505381_24	936375.HMPREF1152_0670	481.0	0	N/A	N/A
structural_annotation	UHGV-1505381_24	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-1505381_25	phrog_36	55.0	0.0000000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-1505381_25	UniRef90_J5WFY5	135.0	2.23e-38	PF07374 family protein	N/A
eggNOG-mapper	UHGV-1505381_25	1408424.JHYI01000032_gene3838	60.1	0.00000000209	N/A	N/A
COG	UHGV-1505381_25	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1505381_25	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-1505381_26	K07451	53.7	0.0000000000000041	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1505381_26	phrog_119	82.8	4.2e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1505381_26	UniRef90_UPI001C02D563	99.0	2.12e-24	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1505381_26	1280689.AUJC01000011_gene1516	80.1	7.14e-18	endonuclease activity	N/A
Pfam	UHGV-1505381_26	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1505381_26	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1505381_27	phrog_1066	71.2	1.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-1505381_27	397290.C810_00417	68.9	0.000000000000196	N/A	N/A
structural_annotation	UHGV-1505381_27	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1505381_28	phrog_9	330.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1505381_28	UniRef90_UPI001C01D82C	522.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-1505381_28	1123263.AUKY01000046_gene466	498.0	0	large subunit	N/A
Pfam	UHGV-1505381_28	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1505381_28	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1505381_28	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1505381_28	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1505381_29	phrog_12	139.3	2.50006e-41	portal protein	head and packaging
UniRef90	UHGV-1505381_29	UniRef90_A0A1V5INC9	291.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1505381_29	324057.Pjdr2_1541	221.0	0	Phage portal protein	N/A
Pfam	UHGV-1505381_29	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1505381_29	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1505381_29	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1505381_30	K06904	84.0	2.4e-24	N/A	N/A
PHROG	UHGV-1505381_30	phrog_80	99.9	3.6e-29	head maturation protease	head and packaging
UniRef90	UHGV-1505381_30	UniRef90_UPI001C8D27A1	113.0	2e-27	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1505381_30	324057.Pjdr2_1542	104.0	9.35e-25	Caudovirus prohead serine protease	N/A
Pfam	UHGV-1505381_30	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-1505381_30	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1505381_30	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1505381_31	phrog_10	76.4	3.8e-22	major head protein	head and packaging
UniRef90	UHGV-1505381_31	UniRef90_A0A8J6P3N1	273.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1505381_31	1321814.HMPREF9089_00930	125.0	1.82e-29	Phage capsid family	N/A
Pfam	UHGV-1505381_31	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1505381_31	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1505381_31	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1505381_31	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1505381_32	phrog_5223	45.3	0.0000000000012	neck protein	connector
PHROG	UHGV-1505381_33	phrog_1951	83.9	1.3e-24	head-tail adaptor	connector
UniRef90	UHGV-1505381_33	UniRef90_A0A373XZI9	82.4	2.46e-18	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-1505381_33	411465.PEPMIC_00738	67.0	0.000000000000407	N/A	N/A
NCBIFam	UHGV-1505381_33	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1505381_33	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1505381_34	UniRef90_A0A366JRC6	74.7	0.00000000000000848	Bacteriophage HK97-gp10 putative tail-component	N/A
eggNOG-mapper	UHGV-1505381_34	1145276.T479_19950	67.8	0.000000000000711	N/A	N/A
structural_annotation	UHGV-1505381_34	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1505381_35	1033744.CAEL01000029_gene1277	95.1	2.75e-24	N/A	N/A
structural_annotation	UHGV-1505381_35	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-1505381_36	phrog_88	99.0	4.6e-29	major tail protein	tail
UniRef90	UHGV-1505381_36	UniRef90_UPI0011DDC47F	125.0	7.24e-33	phage tail protein	N/A
eggNOG-mapper	UHGV-1505381_36	1033744.CAEL01000029_gene1276	124.0	3.43e-33	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1505381_36	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1505381_36	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1505381_37	phrog_709	70.2	8.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-1505381_37	1111134.HMPREF1253_0376	67.4	0.00000000000642	N/A	N/A
structural_annotation	UHGV-1505381_37	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1505381_38	phrog_1533	540.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1505381_38	UniRef90_A0A6L5Y6C3	443.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1505381_38	1410624.JNKK01000017_gene1985	442.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-1505381_38	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1505381_38	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1505381_38	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1505381_38	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1505381_39	phrog_202	224.6	0	distal tail protein Dit	tail
UniRef90	UHGV-1505381_39	UniRef90_A0A7Y9B0J5	288.0	0	Phage tail family protein	N/A
eggNOG-mapper	UHGV-1505381_39	1232453.BAIF02000011_gene3368	122.0	4.62e-28	Phage tail protein	N/A
Pfam	UHGV-1505381_39	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-1505381_39	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1505381_39	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1505381_39	PF05709,PF21708,TIGR01633,NF041449,COG4722,COG3506	N/A	N/A	N/A	N/A
PHROG	UHGV-1505381_40	phrog_9478	299.9	0	minor tail protein	tail
UniRef90	UHGV-1505381_40	UniRef90_A0A7Y9B0I6	457.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1505381_40	476272.RUMHYD_02865	307.0	0	N/A	N/A
Pfam	UHGV-1505381_40	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1505381_40	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-1505381_40	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1505381_42	phrog_1863	53.6	0.0000000000000025	N/A	unknown function
eggNOG-mapper	UHGV-1505381_42	665956.HMPREF1032_02709	66.6	0.000000000000129	N/A	N/A
PHROG	UHGV-1505381_43	phrog_962	60.2	3e-17	holin	lysis
UniRef90	UHGV-1505381_43	UniRef90_J6HE40	76.6	7.63e-16	Holin, phage phi LC3 family	N/A
eggNOG-mapper	UHGV-1505381_43	936375.HMPREF1152_1091	76.6	1.28e-16	Bacteriophage holin	N/A
Pfam	UHGV-1505381_43	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1505381_43	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1505381_43	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1505381_43	COG5546	N/A	N/A	N/A	N/A
KOfam	UHGV-1505381_44	K00689	72.8	1.7e-21	E2.4.1.5; dextransucrase [EC:2.4.1.5]	N/A
PHROG	UHGV-1505381_44	phrog_7854	104.1	5.1e-39	endolysin	lysis
UniRef90	UHGV-1505381_44	UniRef90_A0A535E0J9	63.9	0.0000000202	CHAP domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-1505381_44	1120936.KB907210_gene5864	63.5	0.0000000147	CHAP domain	N/A
Pfam	UHGV-1505381_44	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1505381_44	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-1505381_44	COG3942	N/A	N/A	Surface antigen	N/A
structural_annotation	UHGV-1505381_44	PF19127,PF05382,TIGR04035,NF008096,COG5263,COG3942	N/A	N/A	N/A	N/A
KOfam	UHGV-1505381_45	K14059	210.3	0	int; integrase	N/A
PHROG	UHGV-1505381_45	phrog_1	197.3	0	integrase	integration and excision
UniRef90	UHGV-1505381_45	UniRef90_A0A2S0L669	726.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1505381_45	1408437.JNJN01000039_gene380	197.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1505381_45	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1505381_45	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1505381_45	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1505381_45	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1505381_46	phrog_2158	191.4	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1505381_46	UniRef90_A0A413KZA9	425.0	0	Abi family protein	N/A
eggNOG-mapper	UHGV-1505381_46	476272.RUMHYD_02820	401.0	0	Abi-like protein	N/A
PADLOC	UHGV-1505381_46	AbiD	119.7	5e-35	AbiD	Abi
Pfam	UHGV-1505381_46	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-1505381_46	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-1505381_46	PF07751,COG4823	N/A	N/A	N/A	N/A
KOfam	UHGV-1505381_47	K01356	111.1	1.7e-32	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1505381_47	phrog_4	116.1	3.6e-34	transcriptional repressor	transcription regulation
UniRef90	UHGV-1505381_47	UniRef90_A0A2S0L5R2	279.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1505381_47	936375.HMPREF1152_0654	234.0	0	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1505381_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1505381_47	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1505381_47	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1505381_47	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1505381_48	UniRef90_A0A2S0L5S2	129.0	8.97e-38	N/A	N/A
eggNOG-mapper	UHGV-1505381_48	1159488.SEQMU2_01590	57.8	0.000000000273	N/A	N/A
Pfam	UHGV-1505381_48	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-1505381_48	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1505381_48	PF05339,NF041575,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1505381_49	phrog_14088	49.6	0.000000000000039	N/A	unknown function
UniRef90	UHGV-1505381_49	UniRef90_UPI001D07CB3C	58.2	0.000000000776	carboxypeptidase	N/A
eggNOG-mapper	UHGV-1505381_49	1232453.BAIF02000057_gene1127	57.0	0.000000000331	N/A	N/A
PHROG	UHGV-1505381_50	phrog_1305	126.2	1.9e-37	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1505381_50	UniRef90_UPI00051C03A3	230.0	0	N/A	N/A
eggNOG-mapper	UHGV-1505381_50	1235802.C823_04729	225.0	0	N/A	N/A
Pfam	UHGV-1505381_50	PF13643	N/A	N/A	N/A	DUF4145
structural_annotation	UHGV-1505381_50	PF13643	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1505381_51	NF040990	N/A	N/A	N/A	N/A
PHROG	UHGV-1505381_56	phrog_26484	76.9	2e-22	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1505381_56	UniRef90_A0A223AQZ1	149.0	1.4013e-45	PC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1505381_56	698758.AXY_05950	99.8	8.37e-27	protein conserved in bacteria	N/A
Pfam	UHGV-1505381_56	PF02229	N/A	N/A	Transcriptional Coactivator p15 (PC4)	PC4
COG	UHGV-1505381_56	COG4443	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1505381_56	COG4443	N/A	N/A	N/A	N/A
Pfam	UHGV-1505381_57	PF14058	N/A	N/A	PcfK-like protein	PcfK
structural_annotation	UHGV-1505381_57	PF14058	N/A	N/A	N/A	N/A
PHROG	UHGV-1505381_58	phrog_8470	144.1	1.10002e-42	N/A	unknown function
UniRef90	UHGV-1505381_58	UniRef90_J5WNV0	398.0	0	PcfJ-like protein	N/A
eggNOG-mapper	UHGV-1505381_58	936375.HMPREF1152_1059	398.0	0	PcfJ-like protein	N/A