UHGV-1507496 (vOTU-169217)

Viral Genome: UHGV-1507496

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1507496
vOTU ID	vOTU-169217
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0207652
Associated BioSample	SAMEA2466961
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.14 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9671
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.53
Jumbo phage	No

Genome content
Genome length (bp)	28,472
GC content	46.54%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	89%
Average CDS length (bps)	573.48
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 68.14)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1507496_1	556269.ACDQ01000006_gene1593	79.7	3.31e-17	N/A	N/A
structural_annotation	UHGV-1507496_1	PF02799,MF_02210,NF007530,COG3153	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1507496_2	556269.ACDQ01000006_gene1592	531.0	0	N/A	N/A
structural_annotation	UHGV-1507496_2	PF11134,MF_01605,NF000022,NF033675,COG5276	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1507496_3	556268.OFAG_00941	194.0	0	N/A	N/A
structural_annotation	UHGV-1507496_3	PF20387,TIGR02215	N/A	N/A	N/A	N/A
KOfam	UHGV-1507496_4	K24213	55.0	4.5e-16	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-1507496_4	phrog_819	44.3	0.000000000001	tail protein	tail
UniRef90	UHGV-1507496_4	UniRef90_UPI0019614AE9	122.0	1.15e-30	collagen-like protein	N/A
eggNOG-mapper	UHGV-1507496_4	556269.ACDQ01000006_gene1587	60.1	0.000000105	tail collar domain protein	N/A
Pfam	UHGV-1507496_4	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1507496_4	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-1507496_6	phrog_3342	78.9	3.7e-23	N/A	unknown function
UniRef90	UHGV-1507496_6	UniRef90_A0A6L6YMG8	110.0	3.63e-30	Pseudouridine synthase	N/A
eggNOG-mapper	UHGV-1507496_6	563192.HMPREF0179_01734	100.0	5.92e-27	N/A	N/A
UniRef90	UHGV-1507496_7	UniRef90_A0A5B7ZLQ0	105.0	1.73e-24	N/A	N/A
Pfam	UHGV-1507496_7	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-1507496_7	PF14301	N/A	N/A	N/A	N/A
COG	UHGV-1507496_8	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
eggNOG-mapper	UHGV-1507496_9	469610.HMPREF0189_01118	93.6	6.01e-19	N/A	N/A
PHROG	UHGV-1507496_11	phrog_9953	116.5	2.3e-34	major head protein	head and packaging
UniRef90	UHGV-1507496_11	UniRef90_UPI000ADD8E8A	343.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1507496_11	1562701.BBOF01000081_gene253	352.0	0	N/A	N/A
NCBIFam	UHGV-1507496_11	NF033394.1	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1507496_11	PF17236,MF_04133,NF033394,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1507496_12	UniRef90_A0A7W8M809	94.7	3.97e-18	DNA-binding protein H-NS	N/A
eggNOG-mapper	UHGV-1507496_12	1562701.BBOF01000081_gene250	121.0	9.94e-29	N/A	N/A
PHROG	UHGV-1507496_13	phrog_12082	82.7	4e-24	portal protein	head and packaging
eggNOG-mapper	UHGV-1507496_13	204773.HEAR2283	540.0	0	N/A	N/A
structural_annotation	UHGV-1507496_13	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1507496_14	K06909	97.1	2.3e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1507496_14	phrog_2	108.3	1.2e-31	terminase large subunit	head and packaging
UniRef90	UHGV-1507496_14	UniRef90_C3X8X3	601.0	0	Putative phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1507496_14	556268.OFAG_00922	613.0	0	Terminase-like family	N/A
COG	UHGV-1507496_14	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1507496_14	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1507496_15	K01160	50.7	0.000000000000044	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1507496_15	phrog_11043	54.9	7.1e-16	N/A	unknown function
UniRef90	UHGV-1507496_15	UniRef90_UPI001BD5ADDD	80.9	0.00000000000000103	endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1507496_15	1439940.BAY1663_02332	85.5	1.69e-17	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1507496_15	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
KOfam	UHGV-1507496_17	K02315	168.8	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1507496_17	phrog_50	169.8	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1507496_17	UniRef90_F3QJB7	247.0	0	IstB-like ATP-binding protein	N/A
eggNOG-mapper	UHGV-1507496_17	762966.HMPREF9439_01018	247.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-1507496_17	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1507496_17	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1507496_17	PF01695,MF_01919,NF005931,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1507496_18	phrog_1032	68.2	1.7e-19	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1507496_18	UniRef90_A0A5B3FNM4	105.0	1.18e-22	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1507496_18	742823.HMPREF9465_00234	64.3	0.00000000547	Helix-turn-helix domain	N/A
Pfam	UHGV-1507496_18	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-1507496_18	COG0640	N/A	N/A	DNA-binding transcriptional regulator, ArsR family	N/A
structural_annotation	UHGV-1507496_18	PF10007,MF_01909,TIGR01610,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-1507496_19	K01356	81.5	1.8e-23	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1507496_19	phrog_4	144.3	9.30462e-43	transcriptional repressor	transcription regulation
UniRef90	UHGV-1507496_19	UniRef90_UPI0014694428	210.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1507496_19	257310.BB1678	201.0	0	Peptidase S24-like	N/A
Pfam	UHGV-1507496_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1507496_19	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1507496_19	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1507496_19	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1507496_22	762966.HMPREF9439_01007	295.0	0	N/A	N/A
PHROG	UHGV-1507496_23	phrog_9151	67.2	2.9e-19	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1507496_23	UniRef90_F3QJA5	132.0	4.68e-39	Toxin-antitoxin system, antitoxin component, HicB domain protein	N/A
eggNOG-mapper	UHGV-1507496_23	762966.HMPREF9439_01006	132.0	7.85e-40	protein encoded in hypervariable junctions of pilus gene clusters	N/A
COG	UHGV-1507496_23	COG4226	N/A	N/A	Predicted nuclease of the RNAse H fold, HicB family	N/A
structural_annotation	UHGV-1507496_23	PF21748,COG4226	N/A	N/A	N/A	N/A
UniRef90	UHGV-1507496_27	UniRef90_A0A3D3SJ30	189.0	0	Transcriptional regulator	N/A
PHROG	UHGV-1507496_30	phrog_155	113.0	2.7e-33	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1507496_30	UniRef90_A0A6J5P0M3	87.0	3.16e-17	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-1507496_30	1207076.ALAT01000105_gene1941	81.6	2.7e-16	ERF superfamily	N/A
Pfam	UHGV-1507496_30	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1507496_30	PF04404,TIGR00607,COG5055	N/A	N/A	N/A	N/A
KOfam	UHGV-1507496_31	K03111	149.7	2.94273e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1507496_31	phrog_44	128.0	7.4e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1507496_31	UniRef90_F3QNN6	149.0	1.90577e-43	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1507496_31	469610.HMPREF0189_01394	149.0	3.22299e-44	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1507496_31	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1507496_31	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1507496_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1507496_31	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1507496_31	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1507496_32	phrog_253	102.1	5.6e-30	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1507496_32	UniRef90_A7B3R2	61.2	0.00000000787	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-1507496_32	742823.HMPREF9465_00905	85.1	1.08e-18	Siphovirus Gp157	N/A
Pfam	UHGV-1507496_32	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1507496_32	PF05565,NF002139	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1507496_35	762966.HMPREF9439_00996	67.0	0.00000000000277	N/A	N/A
UniRef90	UHGV-1507496_36	UniRef90_F3QJ92	53.9	0.00000144	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1507496_36	469610.HMPREF0189_01154	61.2	0.000000000338	N/A	N/A
eggNOG-mapper	UHGV-1507496_37	469610.HMPREF0189_01079	159.0	0	N/A	N/A
PHROG	UHGV-1507496_38	phrog_2384	282.3	0	N/A	unknown function
UniRef90	UHGV-1507496_38	UniRef90_D9Y6L2	619.0	0	P63C domain-containing protein	N/A
eggNOG-mapper	UHGV-1507496_38	469610.HMPREF0189_01078	629.0	0	P63C domain	N/A
Pfam	UHGV-1507496_38	PF10546	N/A	N/A	P63C domain	P63C
structural_annotation	UHGV-1507496_38	PF10546	N/A	N/A	N/A	N/A
PHROG	UHGV-1507496_41	phrog_2245	55.9	7.8e-16	nucleoside triphosphate pyrophosphohydrolase	other
KOfam	UHGV-1507496_42	K07733	55.9	0.0000000000000011	alpA; prophage regulatory protein	N/A
UniRef90	UHGV-1507496_42	UniRef90_D9Y6B9	147.0	4.2039e-45	Transcriptional regulator, AlpA family	N/A
eggNOG-mapper	UHGV-1507496_42	743974.MBO_05697	49.3	0.000000653	Transcriptional regulator	N/A
Pfam	UHGV-1507496_42	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
COG	UHGV-1507496_42	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-1507496_42	PF05930,NF033499,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1507496_43	phrog_1	73.9	2.5e-21	integrase	integration and excision
UniRef90	UHGV-1507496_43	UniRef90_D9Y6B8	912.0	0	Arm-DNA-bind_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1507496_43	469610.HMPREF0189_01073	912.0	0	DNA integration	N/A
Pfam	UHGV-1507496_43	PF13356	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_3
COG	UHGV-1507496_43	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1507496_43	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1507496_44	phrog_11671	52.9	0.0000000000000075	N/A	unknown function
UniRef90	UHGV-1507496_44	UniRef90_F3QKR6	276.0	0	Transcriptional regulator, MerR family	N/A
eggNOG-mapper	UHGV-1507496_44	469610.HMPREF0189_01072	276.0	0	PFAM regulatory protein, MerR	N/A
Pfam	UHGV-1507496_44	PF13411	N/A	N/A	MerR HTH family regulatory protein	MerR_1
COG	UHGV-1507496_44	COG0789	N/A	N/A	DNA-binding transcriptional regulator, MerR family	N/A