UHGV-1508833 (vOTU-024808)

Viral Genome: UHGV-1508833

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1508833
vOTU ID	vOTU-024808
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0208769
Associated BioSample	SAMEA2738071
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.7 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9793
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.88
Jumbo phage	No

Genome content
Genome length (bp)	24,903
GC content	37.24%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	39
CDS density	94%
Average CDS length (bps)	599.85
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 71.7)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1508833_2	NF007271	N/A	N/A	N/A	N/A
PHROG	UHGV-1508833_3	phrog_1689	81.4	1.5e-23	nucleotide kinase	other
UniRef90	UHGV-1508833_3	UniRef90_UPI0008A255A2	155.0	0	N/A	N/A
eggNOG-mapper	UHGV-1508833_3	745088.D4N4M2_9CAUD	54.3	0.000000108	N/A	N/A
Pfam	UHGV-1508833_3	PF11753	N/A	N/A	N/A	DUF3310
eggNOG-mapper	UHGV-1508833_7	562981.HMPREF0428_01830	77.0	0.0000000000000029	N/A	N/A
KOfam	UHGV-1508833_9	K06191	92.4	4.8e-27	nrdH; glutaredoxin-like protein NrdH	N/A
PHROG	UHGV-1508833_9	phrog_22	60.3	3.4e-17	thioredoxin domain	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1508833_9	UniRef90_C8NHX1	150.0	0	Glutaredoxin-like protein NrdH	N/A
eggNOG-mapper	UHGV-1508833_9	638301.HMPREF0444_1516	150.0	0	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins	N/A
Pfam	UHGV-1508833_9	PF00462	N/A	N/A	Glutaredoxin	Glutaredoxin
NCBIFam	UHGV-1508833_9	TIGR02194.1	N/A	N/A	glutaredoxin-like protein NrdH	N/A
COG	UHGV-1508833_9	COG0695	N/A	N/A	Glutaredoxin	N/A
structural_annotation	UHGV-1508833_9	PF00462,MF_01132,NF007657,COG0695	N/A	N/A	N/A	N/A
PHROG	UHGV-1508833_10	phrog_2113	63.6	2.1e-18	N/A	unknown function
UniRef90	UHGV-1508833_10	UniRef90_A0A218MNC1	125.0	5.06e-35	HTH_11 domain-containing protein	N/A
eggNOG-mapper	UHGV-1508833_10	638301.HMPREF0444_1515	189.0	0	N/A	N/A
structural_annotation	UHGV-1508833_10	PF11994,MF_01177,TIGR02944,COG1959	N/A	N/A	N/A	N/A
KOfam	UHGV-1508833_11	K00558	292.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1508833_11	phrog_116	319.5	0	DNA methyltransferase	other
UniRef90	UHGV-1508833_11	UniRef90_A0A371QG25	480.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1508833_11	646413.C5IUI7_9CAUD	431.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1508833_11	MTase_II_00072	311.8	0	Type II methyltransferase	RM
Pfam	UHGV-1508833_11	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1508833_11	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
structural_annotation	UHGV-1508833_11	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1508833_12	K03111	131.7	8e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1508833_12	phrog_44	138.5	3.89995e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1508833_12	UniRef90_UPI0008A2AE40	246.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1508833_12	638301.HMPREF0444_1514	196.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1508833_12	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1508833_12	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1508833_12	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1508833_12	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1508833_12	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1508833_13	phrog_248	104.5	1e-30	transcriptional activator	transcription regulation
UniRef90	UHGV-1508833_13	UniRef90_W1TSX5	118.0	5.79e-31	Phage encoded transcriptional regulator, ArpU family protein	N/A
eggNOG-mapper	UHGV-1508833_13	1403946.Q615_SPAC00127G0144	118.0	9.71e-32	Transcriptional regulator, ArpU family	N/A
NCBIFam	UHGV-1508833_13	TIGR01637.1	N/A	N/A	ArpU family phage packaging/lysis transcriptional regulator	N/A
KOfam	UHGV-1508833_14	K04763	99.4	4.4e-29	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1508833_14	phrog_216	177.3	0	integrase	integration and excision
UniRef90	UHGV-1508833_14	UniRef90_A0A420YQN1	332.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1508833_14	638301.HMPREF0444_1512	255.0	0	Phage integrase family	N/A
Pfam	UHGV-1508833_14	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1508833_14	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1508833_14	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-1508833_15	phrog_338	110.2	2.2e-32	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1508833_15	UniRef90_A0A420YQQ6	211.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1508833_15	908337.HMPREF9257_0545	178.0	0	HNH endonuclease	N/A
Pfam	UHGV-1508833_15	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1508833_15	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1508833_15	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1508833_16	phrog_104	298.4	0	portal protein	head and packaging
UniRef90	UHGV-1508833_16	UniRef90_A0A420YQP0	626.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1508833_16	1069534.LRC_07240	574.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-1508833_16	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1508833_17	phrog_2494	328.6	0	minor head protein	head and packaging
UniRef90	UHGV-1508833_17	UniRef90_A0A822QEM3	250.0	0	Gp35	N/A
eggNOG-mapper	UHGV-1508833_17	908337.HMPREF9257_0543	256.0	0	N/A	N/A
PHROG	UHGV-1508833_18	phrog_17688	475.6	0	N/A	unknown function
UniRef90	UHGV-1508833_18	UniRef90_A0A420YQU1	839.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1508833_18	585203.SMSK564_1286	803.0	0	phage terminase, large subunit	N/A
COG	UHGV-1508833_18	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1508833_18	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1508833_19	phrog_233	123.8	1.7e-36	head scaffolding protein	head and packaging
UniRef90	UHGV-1508833_19	UniRef90_A0A420YQU4	150.0	2.67648e-43	Phage scaffold protein	N/A
eggNOG-mapper	UHGV-1508833_19	1321372.AQQB01000060_gene62	107.0	4.28e-27	N/A	N/A
structural_annotation	UHGV-1508833_19	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1508833_20	phrog_32396	122.1	1.7e-36	N/A	unknown function
UniRef90	UHGV-1508833_20	UniRef90_UPI001C3D4F73	462.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1508833_20	1121864.OMO_02152	352.0	0	Phage capsid family	N/A
Pfam	UHGV-1508833_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1508833_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1508833_20	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1508833_22	phrog_137	121.8	2.8e-36	head-tail adaptor Ad1	connector
UniRef90	UHGV-1508833_22	UniRef90_UPI001C3E6F4D	201.0	0	phage Gp19/Gp15/Gp42 family protein	N/A
eggNOG-mapper	UHGV-1508833_22	1321372.AQQB01000060_gene65	177.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-1508833_22	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-1508833_22	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1508833_23	phrog_501	88.5	5.9e-26	head closure Hc1	connector
UniRef90	UHGV-1508833_23	UniRef90_A0A139QHM6	140.0	4.83994e-41	Phage-associated protein	N/A
eggNOG-mapper	UHGV-1508833_23	938288.HG326226_gene865	150.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-1508833_23	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1508833_24	phrog_387	98.5	3.5e-29	neck protein	connector
UniRef90	UHGV-1508833_24	UniRef90_A0A4U9XLC1	82.8	3.4e-19	N/A	N/A
eggNOG-mapper	UHGV-1508833_24	883110.HMPREF9260_00655	87.4	8.26e-22	N/A	N/A
PHROG	UHGV-1508833_25	phrog_123	55.9	8.3e-16	tail terminator	connector
UniRef90	UHGV-1508833_25	UniRef90_D2BQF4	127.0	4.99e-36	N/A	N/A
eggNOG-mapper	UHGV-1508833_25	12390.Q77MU8_9CAUD	126.0	2.4e-36	N/A	N/A
structural_annotation	UHGV-1508833_25	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1508833_26	phrog_117	158.6	0	major tail protein	tail
UniRef90	UHGV-1508833_26	UniRef90_UPI0008A29B99	371.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1508833_26	1321820.HMPREF1983_00927	228.0	0	domain, Protein	N/A
COG	UHGV-1508833_26	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1508833_26	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1508833_27	phrog_1526	63.0	4.6e-18	N/A	unknown function
UniRef90	UHGV-1508833_27	UniRef90_A0A380KP73	68.2	0.000000000000311	N/A	N/A
eggNOG-mapper	UHGV-1508833_27	157924.Q9F4J5_9CAUD	54.3	0.0000000223	N/A	N/A
PHROG	UHGV-1508833_28	phrog_1633	166.3	0	N/A	unknown function
UniRef90	UHGV-1508833_28	UniRef90_UPI001C3C9BD5	234.0	0	N/A	N/A
eggNOG-mapper	UHGV-1508833_28	768726.HMPREF9178_1055	136.0	9.81e-40	N/A	N/A
Pfam	UHGV-1508833_28	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-1508833_28	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-1508833_29	phrog_6900	265.1	0	tail length tape measure protein	tail
UniRef90	UHGV-1508833_29	UniRef90_UPI001C3E4479	813.0	0	PblA	N/A
eggNOG-mapper	UHGV-1508833_29	585203.SMSK564_1276	405.0	0	phage tail tape measure protein	N/A
COG	UHGV-1508833_29	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1508833_30	phrog_202	94.6	4.5e-36	distal tail protein Dit	tail
UniRef90	UHGV-1508833_30	UniRef90_UPI0008A170C3	481.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1508833_30	1340434.AXVA01000005_gene4863	68.6	0.000000000206	Phage tail protein	N/A
NCBIFam	UHGV-1508833_30	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1508833_30	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1508833_30	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1508833_31	phrog_588	214.5	0	tail fiber protein and host specificity	tail
UniRef90	UHGV-1508833_31	UniRef90_UPI001C3C3E26	1326.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1508833_31	638301.HMPREF0444_1496	897.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1508833_31	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1508833_31	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1508833_31	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1508833_31	PF14594,PF21602,TIGR01665,TIGR04488,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1508833_32	phrog_372	294.3	0	tail protein	tail
UniRef90	UHGV-1508833_32	UniRef90_UPI001C3DBE8A	1295.0	0	N/A	N/A
eggNOG-mapper	UHGV-1508833_32	638301.HMPREF0444_1495	992.0	0	N/A	N/A
Pfam	UHGV-1508833_32	PF05895	N/A	N/A	N/A	DUF859
structural_annotation	UHGV-1508833_32	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-1508833_34	phrog_199	64.3	1.3e-18	holin	lysis
UniRef90	UHGV-1508833_34	UniRef90_UPI0008A4204D	261.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-1508833_34	638301.HMPREF0444_1493	188.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1508833_34	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1508833_34	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-1508833_34	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1508833_35	phrog_10091	79.5	3.8e-23	holin	lysis
UniRef90	UHGV-1508833_35	UniRef90_UPI0008A4D2A5	162.0	0	phage holin	N/A
eggNOG-mapper	UHGV-1508833_35	638301.HMPREF0444_1492	147.0	2.8026e-45	Holin, phage phi LC3 family	N/A
Pfam	UHGV-1508833_35	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1508833_35	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1508833_35	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1508833_35	COG5546	N/A	N/A	N/A	N/A
KOfam	UHGV-1508833_36	K01447	54.9	0.0000000000000017	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1508833_36	phrog_1110	304.7	0	endolysin	lysis
UniRef90	UHGV-1508833_36	UniRef90_A0A428HGA5	365.0	0	Autolysin	N/A
eggNOG-mapper	UHGV-1508833_36	1566990.A0A0A0YV41_9CAUD	338.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-1508833_36	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1508833_36	PF01473	N/A	N/A	Putative cell wall binding repeat	Choline_bind_1
structural_annotation	UHGV-1508833_36	PF19127,PF01510,TIGR04035,COG5263	N/A	N/A	N/A	N/A
PHROG	UHGV-1508833_37	phrog_1412	192.0	0	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1508833_37	UniRef90_A0A7Z0LFG9	206.0	0	Type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-1508833_37	562981.HMPREF0428_01864	201.0	0	PemK-like, MazF-like toxin of type II toxin-antitoxin system	N/A
Pfam	UHGV-1508833_37	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-1508833_37	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-1508833_37	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A