UHGV-1515517 (vOTU-019166)

Viral Genome: UHGV-1515517

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1515517
vOTU ID	vOTU-019166
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0311566
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.61 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9802
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.7
Jumbo phage	No

Genome content
Genome length (bp)	35,871
GC content	36.17%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	84%
Average CDS length (bps)	546.66
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 62.61)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1515517_3	K14059	256.8	0	int; integrase	N/A
PHROG	UHGV-1515517_3	phrog_1	212.1	0	integrase	integration and excision
UniRef90	UHGV-1515517_3	UniRef90_A0A292SPJ9	694.0	0	Site-specific integrase (Fragment)	N/A
eggNOG-mapper	UHGV-1515517_3	1235799.C818_02711	376.0	0	Phage integrase family	N/A
Pfam	UHGV-1515517_3	PF02920	N/A	N/A	DNA binding domain of tn916 integrase	Integrase_DNA
Pfam	UHGV-1515517_3	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1515517_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1515517_3	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1515517_3	PF00589,PF02920,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1515517_4	phrog_16129	66.6	1.3e-19	excisionase	integration and excision
UniRef90	UHGV-1515517_4	UniRef90_A0A412RR26	177.0	0	HTH luxR-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1515517_4	658088.HMPREF0987_01415	86.3	1.24e-20	Excisionase from transposon Tn916	N/A
Pfam	UHGV-1515517_4	PF09035	N/A	N/A	Excisionase from transposon Tn916	Tn916-Xis
NCBIFam	UHGV-1515517_4	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-1515517_4	PF09035,PF00196,MF_00674,NF033787,NF008895,COG2771	N/A	N/A	N/A	N/A
UniRef90	UHGV-1515517_6	UniRef90_A0A292SPP9	401.0	0	SpoVT-AbrB domain-containing protein	N/A
Pfam	UHGV-1515517_6	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
PHROG	UHGV-1515517_7	phrog_9804	159.9	0	N/A	unknown function
UniRef90	UHGV-1515517_7	UniRef90_A0A292SPH8	429.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1515517_7	1410650.JHWL01000003_gene2847	136.0	7.39e-38	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1515517_7	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1515517_7	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1515517_9	phrog_2514	80.9	1.1e-23	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1515517_9	UniRef90_A0A174WT25	120.0	4.87e-29	Replication initiator A domain-containing protein	N/A
eggNOG-mapper	UHGV-1515517_9	1120998.AUFC01000013_gene2941	150.0	5.79997e-42	N/A	N/A
structural_annotation	UHGV-1515517_9	PF09681,MF_01177,TIGR01714,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-1515517_11	phrog_17284	67.3	1.9e-19	N/A	unknown function
UniRef90	UHGV-1515517_11	UniRef90_A0A412KFA2	221.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1515517_11	482234.SCAZ3_10455	83.6	3.06e-16	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1515517_11	oMTase_00023	68.6	1.2e-19	orphan methyltransferase	RM
Pfam	UHGV-1515517_11	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1515517_11	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-1515517_12	K19171	53.0	8.7e-16	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1515517_12	phrog_10445	102.2	4.6e-30	N/A	unknown function
UniRef90	UHGV-1515517_12	UniRef90_A0A416G2C8	274.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-1515517_12	1298920.KI911353_gene2731	160.0	2.61062e-42	nuclear chromosome segregation	N/A
Pfam	UHGV-1515517_12	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1515517_12	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1515517_12	PF13514,NF000823,COG3593	N/A	N/A	N/A	N/A
KOfam	UHGV-1515517_14	K03111	56.4	4.1e-18	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1515517_14	phrog_26861	117.0	1.1e-34	N/A	unknown function
UniRef90	UHGV-1515517_14	UniRef90_A0A8D9PGK1	400.0	0	Single strand binding protein	N/A
eggNOG-mapper	UHGV-1515517_14	515620.EUBELI_01590	256.0	0	N/A	N/A
Pfam	UHGV-1515517_14	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1515517_14	NF004476.0	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1515517_14	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1515517_14	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-1515517_15	UniRef90_A0A8D9UIQ5	168.0	0	Sporulation initiation factor	N/A
Pfam	UHGV-1515517_15	PF08769	N/A	N/A	Sporulation initiation factor Spo0A C terminal	Spo0A_C
structural_annotation	UHGV-1515517_15	PF08769,TIGR02875	N/A	N/A	N/A	N/A
KOfam	UHGV-1515517_16	K01449	71.7	1.4e-20	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1515517_16	phrog_14642	42.0	0.00000000001	endolysin	lysis
UniRef90	UHGV-1515517_16	UniRef90_A0A8D9PGU7	341.0	0	Cell Wall Hydrolase	N/A
eggNOG-mapper	UHGV-1515517_16	742733.HMPREF9469_00034	91.7	1.39e-20	Cell Wall Hydrolase	N/A
Pfam	UHGV-1515517_16	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
COG	UHGV-1515517_16	COG3773	N/A	N/A	Cell wall hydrolase CwlJ, involved in spore germination	N/A
structural_annotation	UHGV-1515517_16	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A
PHROG	UHGV-1515517_17	phrog_463	213.2	0	anti-repressor	transcription regulation
UniRef90	UHGV-1515517_17	UniRef90_A0A8D9PGL6	400.0	0	P22_AR protein	N/A
eggNOG-mapper	UHGV-1515517_17	596329.HMPREF0631_1352	190.0	0	BRO family, N-terminal domain protein	N/A
Pfam	UHGV-1515517_17	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1515517_17	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1515517_17	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1515517_17	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-1515517_19	phrog_32192	77.6	1.2e-22	N/A	unknown function
UniRef90	UHGV-1515517_19	UniRef90_UPI001D0221FF	145.0	6.06762e-43	alanine-zipper protein	N/A
eggNOG-mapper	UHGV-1515517_19	397290.C810_05153	49.3	0.00000549	N/A	N/A
KOfam	UHGV-1515517_20	K18830	61.4	1.6e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1515517_20	phrog_2967	57.6	1.8e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1515517_20	UniRef90_A0A1Q6LL24	141.0	8.39994e-41	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1515517_20	97138.C820_01960	110.0	1.77e-29	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-1515517_20	retron_type_VI_hth_cluster2_1	41.5	0.000000000025	N/A	Retron
Pfam	UHGV-1515517_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1515517_20	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1515517_20	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1515517_21	1234679.BN424_1825	55.1	0.000001	N/A	N/A
structural_annotation	UHGV-1515517_21	PF03843,MF_01959,TIGR00752,COG3065	N/A	N/A	N/A	N/A
KOfam	UHGV-1515517_22	K07273	153.3	1.4013e-45	acm; lysozyme	N/A
PHROG	UHGV-1515517_22	phrog_291	144.9	6.30584e-43	endolysin	lysis
UniRef90	UHGV-1515517_22	UniRef90_A0A8D9UIP9	811.0	0	Lysozyme	N/A
eggNOG-mapper	UHGV-1515517_22	411470.RUMGNA_00451	192.0	0	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
Pfam	UHGV-1515517_22	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1515517_22	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1515517_22	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1515517_24	phrog_2566	49.4	0.000000000000065	N/A	unknown function
PHROG	UHGV-1515517_25	phrog_544	233.6	0	major head protein	head and packaging
UniRef90	UHGV-1515517_25	UniRef90_A0A8D9PGP3	830.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-1515517_25	608534.GCWU000341_02293	263.0	0	N/A	N/A
NCBIFam	UHGV-1515517_25	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
PHROG	UHGV-1515517_27	phrog_64	136.2	1.7e-40	portal protein	head and packaging
UniRef90	UHGV-1515517_27	UniRef90_A0A8D9PG58	1056.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1515517_27	397290.C810_01397	459.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1515517_27	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1515517_27	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-1515517_28	UniRef90_A0A8D9UIR9	160.0	0	RimK-related lysine biosynthesis protein	N/A
PHROG	UHGV-1515517_29	phrog_36	66.0	6.1e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1515517_29	UniRef90_A0A352SH29	85.9	2.82e-19	RNA polymerase subunit sigma-70 (Fragment)	N/A
eggNOG-mapper	UHGV-1515517_29	97138.C820_00772	68.9	0.000000000000581	sigma factor activity	N/A
Pfam	UHGV-1515517_29	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1515517_29	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1515517_29	PF07374,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-1515517_30	phrog_38	155.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1515517_30	UniRef90_A0A8D9PG33	1189.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1515517_30	1232453.BAIF02000058_gene1623	352.0	0	TIGRFAM Phage	N/A
COG	UHGV-1515517_30	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1515517_30	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
UniRef90	UHGV-1515517_31	UniRef90_UPI0011072322	77.4	4.75e-16	N/A	N/A
eggNOG-mapper	UHGV-1515517_31	1256908.HMPREF0373_00479	71.2	0.000000000000019	N/A	N/A
structural_annotation	UHGV-1515517_31	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-1515517_32	phrog_2316	59.8	5.4e-17	N/A	unknown function
UniRef90	UHGV-1515517_32	UniRef90_A0A3E4YBW5	179.0	0	N/A	N/A
eggNOG-mapper	UHGV-1515517_32	1395587.P364_0110505	65.9	0.000000000000847	N/A	N/A
Pfam	UHGV-1515517_32	PF16475	N/A	N/A	N/A	DUF5052
structural_annotation	UHGV-1515517_32	PF16475,MF_00436,NF033216,COG1923	N/A	N/A	N/A	N/A
PHROG	UHGV-1515517_33	phrog_1233	83.1	3.9e-24	N/A	unknown function
UniRef90	UHGV-1515517_33	UniRef90_UPI001C39EFB9	155.0	0	Dienelactone hydrolase family protein	N/A
eggNOG-mapper	UHGV-1515517_33	357809.Cphy_2967	102.0	6.58e-26	N/A	N/A
structural_annotation	UHGV-1515517_33	PF13058	N/A	N/A	N/A	N/A
UniRef90	UHGV-1515517_34	UniRef90_A0A8D9PGW1	131.0	7.69e-39	HTH psq-type domain-containing protein	N/A
structural_annotation	UHGV-1515517_34	PF05225,COG2886	N/A	N/A	N/A	N/A
PHROG	UHGV-1515517_35	phrog_6493	130.6	8.4e-39	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1515517_35	UniRef90_UPI00148DB0F2	113.0	6.73e-26	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1515517_35	1029718.SFBM_0770	126.0	3.1e-31	DnaD domain protein	N/A
COG	UHGV-1515517_35	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1515517_35	PF07106,NF040642,COG3355	N/A	N/A	N/A	N/A
UniRef90	UHGV-1515517_36	UniRef90_A0A8D9UIS5	201.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1515517_36	658655.HMPREF0988_00895	156.0	0	N/A	N/A
KOfam	UHGV-1515517_38	K07727	59.4	9.9e-17	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-1515517_38	UniRef90_A0A292SSK6	152.0	0	Cro/Cl family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1515517_38	411470.RUMGNA_00075	129.0	1.13e-38	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1515517_38	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1515517_38	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1515517_41	1235800.C819_00521	58.9	0.00000000179	N/A	N/A
structural_annotation	UHGV-1515517_41	PF09392,NF011854	N/A	N/A	N/A	N/A
PHROG	UHGV-1515517_45	phrog_1233	57.7	2.1e-16	N/A	unknown function
UniRef90	UHGV-1515517_45	UniRef90_A0A345BPX6	93.2	1.59e-22	Metal-dependent hydrolase	N/A
eggNOG-mapper	UHGV-1515517_45	397290.C810_01336	101.0	1.78e-26	N/A	N/A
Pfam	UHGV-1515517_45	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
KOfam	UHGV-1515517_46	K07741	58.7	1.9e-16	antB; anti-repressor protein	N/A
PHROG	UHGV-1515517_46	phrog_373	89.2	5.7e-26	anti-repressor	transcription regulation
UniRef90	UHGV-1515517_46	UniRef90_A0A292SST5	541.0	0	AntA domain-containing protein	N/A
eggNOG-mapper	UHGV-1515517_46	397290.C810_01343	283.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-1515517_46	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
COG	UHGV-1515517_46	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1515517_46	PF08346,TIGR02681,COG3561	N/A	N/A	N/A	N/A
UniRef90	UHGV-1515517_48	UniRef90_A0A292SSH8	112.0	1.01e-31	CopG family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1515517_48	469604.HMPREF0946_00961	64.3	0.000000000000296	N/A	N/A
structural_annotation	UHGV-1515517_48	PF12651,NF041793,COG4710	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1515517_49	658655.HMPREF0988_00915	110.0	3.34e-27	N/A	N/A
PHROG	UHGV-1515517_50	phrog_20016	228.6	0	N/A	unknown function
UniRef90	UHGV-1515517_50	UniRef90_A0A285PT46	163.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1515517_50	397290.C810_05214	234.0	0	N/A	N/A
structural_annotation	UHGV-1515517_50	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1515517_51	phrog_16490	193.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1515517_51	397290.C810_01328	182.0	0	N/A	N/A
eggNOG-mapper	UHGV-1515517_52	658655.HMPREF0988_00918	81.3	2.14e-19	N/A	N/A
eggNOG-mapper	UHGV-1515517_53	658655.HMPREF0988_00919	82.4	2.86e-17	N/A	N/A
structural_annotation	UHGV-1515517_53	NF033819	N/A	N/A	N/A	N/A
KOfam	UHGV-1515517_55	K00651	492.3	0	metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]	N/A
UniRef90	UHGV-1515517_55	UniRef90_C4Z0T6	630.0	0	Homoserine O-acetyltransferase	N/A
eggNOG-mapper	UHGV-1515517_55	515620.EUBELI_01200	630.0	0	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine	N/A
Pfam	UHGV-1515517_55	PF04204	N/A	N/A	Homoserine O-succinyltransferase	HTS
NCBIFam	UHGV-1515517_55	TIGR01001.1	N/A	N/A	homoserine O-succinyltransferase	N/A
COG	UHGV-1515517_55	COG1897	N/A	N/A	Homoserine O-succinyltransferase	N/A
HAMAP	UHGV-1515517_55	MF_00295	N/A	N/A	Homoserine O-succinyltransferase [metAS]	N/A
structural_annotation	UHGV-1515517_55	PF04204,MF_00295,TIGR01001,COG1897	N/A	N/A	N/A	N/A