UHGV-1516214 (vOTU-108998)

Viral Genome: UHGV-1516214

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1516214
vOTU ID	vOTU-108998
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0234855
Associated BioSample	SAMEA2152064
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.87 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9828
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.67
Jumbo phage	No

Genome content
Genome length (bp)	30,954
GC content	53.03%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	93%
Average CDS length (bps)	554.42
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 73.87)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1516214_3	UniRef90_A0A847E3M6	54.7	0.0000000058	Ribbon-helix-helix protein, CopG family	N/A
Pfam	UHGV-1516214_3	PF08681	N/A	N/A	N/A	DUF1778
structural_annotation	UHGV-1516214_3	PF03869,NF010256,COG4877	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1516214_4	1378168.N510_03079	100.0	3.66e-23	N/A	N/A
eggNOG-mapper	UHGV-1516214_5	1408437.JNJN01000043_gene802	158.0	0	N/A	N/A
PHROG	UHGV-1516214_6	phrog_16490	133.8	1.90001e-40	N/A	unknown function
eggNOG-mapper	UHGV-1516214_6	1408437.JNJN01000043_gene803	184.0	0	N/A	N/A
eggNOG-mapper	UHGV-1516214_8	445972.ANACOL_01878	60.1	0.00000000103	N/A	N/A
UniRef90	UHGV-1516214_9	UniRef90_A0A8D9PDT6	68.9	0.000000000000167	Transcriptional regulatory protein	N/A
PHROG	UHGV-1516214_10	phrog_608	64.4	1.9e-18	holin	lysis
UniRef90	UHGV-1516214_10	UniRef90_R6I9L8	79.0	1.26e-16	Putative phage holin	N/A
eggNOG-mapper	UHGV-1516214_10	1121472.AQWN01000009_gene420	60.1	0.000000000355	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1516214_10	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1516214_10	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-1516214_11	phrog_37604	78.3	8e-23	N/A	unknown function
eggNOG-mapper	UHGV-1516214_11	585501.HMPREF6123_0817	73.2	0.0000000000000152	N/A	N/A
KOfam	UHGV-1516214_12	K07273	133.6	2.3e-39	acm; lysozyme	N/A
PHROG	UHGV-1516214_12	phrog_291	119.2	4.9e-35	endolysin	lysis
UniRef90	UHGV-1516214_12	UniRef90_A0A3D2G0D9	461.0	0	Cpl-7 domain-containing protein	N/A
eggNOG-mapper	UHGV-1516214_12	877415.JNJQ01000013_gene314	166.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1516214_12	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1516214_12	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-1516214_12	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1516214_12	PF01183,COG3757	N/A	N/A	N/A	N/A
UniRef90	UHGV-1516214_16	UniRef90_A0A8D9PDX6	64.3	0.000000000015	Zinc-finger double domain protein	N/A
structural_annotation	UHGV-1516214_16	PF07238	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1516214_17	1235797.C816_04179	85.1	0.00000000000000421	Chaperone of endosialidase	N/A
structural_annotation	UHGV-1516214_17	NF041249,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1516214_18	phrog_6616	40.8	0.000000000012	tail protein	tail
UniRef90	UHGV-1516214_18	UniRef90_A0A2Z4QA17	97.8	4.79e-21	KID repeat-containing protein	N/A
eggNOG-mapper	UHGV-1516214_18	1235797.C816_04180	95.9	4.28e-21	N/A	N/A
structural_annotation	UHGV-1516214_18	PF21683,TIGR02126,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1516214_19	phrog_1194	62.3	8.3e-18	N/A	unknown function
structural_annotation	UHGV-1516214_19	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1516214_20	phrog_1535	102.4	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1516214_20	1415775.U729_2614	79.3	0.00000000000289	phage tail tape measure protein	N/A
COG	UHGV-1516214_20	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1516214_21	phrog_706	113.3	2e-33	N/A	unknown function
UniRef90	UHGV-1516214_21	UniRef90_A0A2U1BEN4	197.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1516214_21	693746.OBV_18170	182.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1516214_21	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1516214_21	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1516214_22	phrog_11299	49.2	0.0000000000001	N/A	unknown function
eggNOG-mapper	UHGV-1516214_22	693746.OBV_18160	144.0	1.60028e-42	N/A	N/A
structural_annotation	UHGV-1516214_22	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1516214_23	phrog_3099	74.0	2.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-1516214_23	1235797.C816_04186	221.0	0	N/A	N/A
structural_annotation	UHGV-1516214_23	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1516214_24	phrog_3266	50.7	0.000000000000027	tail completion	connector
eggNOG-mapper	UHGV-1516214_24	1232443.BAIA02000078_gene24	122.0	1.18e-33	N/A	N/A
structural_annotation	UHGV-1516214_24	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1516214_25	phrog_556	55.4	9.5e-16	minor head protein	head and packaging
UniRef90	UHGV-1516214_25	UniRef90_UPI00164EC49A	70.1	0.00000000000206	minor capsid protein	N/A
eggNOG-mapper	UHGV-1516214_25	33035.JPJF01000106_gene3128	92.0	1.18e-21	N/A	N/A
Pfam	UHGV-1516214_25	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1516214_25	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1516214_26	phrog_3366	100.4	1.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-1516214_26	1226322.HMPREF1545_00053	120.0	5.52e-33	N/A	N/A
Pfam	UHGV-1516214_26	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1516214_26	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1516214_27	phrog_541	113.0	1.7e-33	head-tail adaptor	connector
eggNOG-mapper	UHGV-1516214_27	642492.Clole_0822	60.8	0.000000000476	N/A	N/A
PHROG	UHGV-1516214_28	phrog_10	183.7	0	major head protein	head and packaging
UniRef90	UHGV-1516214_28	UniRef90_A0A2U1BEF2	526.0	0	HK97 family phage major capsid protein	N/A
eggNOG-mapper	UHGV-1516214_28	1226322.HMPREF1545_00050	466.0	0	Phage capsid family	N/A
Pfam	UHGV-1516214_28	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1516214_28	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1516214_28	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1516214_28	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1516214_29	phrog_2303	54.3	0.0000000000000018	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1516214_29	1226322.HMPREF1545_00049	123.0	2.26e-33	N/A	N/A
PHROG	UHGV-1516214_30	phrog_581	248.0	0	minor head protein	head and packaging
UniRef90	UHGV-1516214_30	UniRef90_A0A2U1BEM4	335.0	0	Minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1516214_30	903814.ELI_3213	245.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1516214_30	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1516214_30	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1516214_30	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1516214_31	phrog_533	384.0	0	portal protein	head and packaging
UniRef90	UHGV-1516214_31	UniRef90_A0A1C5N775	568.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1516214_31	1226322.HMPREF1545_00044	531.0	0	N/A	N/A
Pfam	UHGV-1516214_31	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1516214_31	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1516214_32	K06909	381.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1516214_32	phrog_3717	153.3	1.4013e-45	terminase large subunit	head and packaging
UniRef90	UHGV-1516214_32	UniRef90_A0A2U1BEH4	635.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1516214_32	33035.JPJF01000106_gene3136	476.0	0	Terminase small subunit	N/A
Pfam	UHGV-1516214_32	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1516214_32	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1516214_32	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1516214_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1516214_32	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1516214_34	K03497	55.8	6.1e-16	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1516214_34	phrog_21498	293.2	0	N/A	unknown function
UniRef90	UHGV-1516214_34	UniRef90_C7MM70	294.0	0	ParB-like nuclease	N/A
eggNOG-mapper	UHGV-1516214_34	469378.Ccur_02830	294.0	0	DNA binding	N/A
PADLOC	UHGV-1516214_34	MTase_II_00015	95.0	9.9e-28	Type II methyltransferase	RM
Pfam	UHGV-1516214_34	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1516214_34	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1516214_34	PF02195,PF05869,MF_02015,TIGR00180,TIGR01712,COG5119	N/A	N/A	N/A	N/A
PHROG	UHGV-1516214_35	phrog_36	56.2	6.2e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1516214_35	UniRef90_UPI001C10AB33	65.9	0.0000000000731	N/A	N/A
eggNOG-mapper	UHGV-1516214_35	428125.CLOLEP_01806	55.5	0.000000136	N/A	N/A
structural_annotation	UHGV-1516214_35	PF07374,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-1516214_40	K00390	108.7	5e-32	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1516214_40	phrog_424	126.2	2e-37	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1516214_40	UniRef90_UPI0009E1B041	351.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1516214_40	1408437.JNJN01000032_gene2312	337.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1516214_40	BrxP_00001	73.5	2.8e-21	BrxP	BREX
Pfam	UHGV-1516214_40	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1516214_40	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1516214_40	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1516214_46	phrog_22543	45.5	0.0000000000013	N/A	unknown function
UniRef90	UHGV-1516214_46	UniRef90_A0A8D9PDT5	88.2	1.99e-20	Hydrogenase/urease nickel incorporation protein	N/A
PHROG	UHGV-1516214_47	phrog_954	194.9	0	DNA methyltransferase	other
UniRef90	UHGV-1516214_47	UniRef90_A0A810Q0N4	292.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1516214_47	1280698.AUJS01000007_gene1028	270.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-1516214_47	MTase_II_00074	192.3	0	Type II methyltransferase	RM
Pfam	UHGV-1516214_47	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-1516214_47	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-1516214_47	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
PHROG	UHGV-1516214_49	phrog_374	75.5	8.80015e-43	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1516214_49	UniRef90_UPI000FF8D02D	109.0	4.55e-26	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1516214_49	478749.BRYFOR_05054	117.0	7.78e-29	AP2 domain protein	N/A
structural_annotation	UHGV-1516214_49	PF17375	N/A	N/A	N/A	N/A
PHROG	UHGV-1516214_50	phrog_1770	102.8	3.4e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1516214_50	UniRef90_A0A533R9G2	111.0	1.46e-28	Holliday junction endonuclease	N/A
eggNOG-mapper	UHGV-1516214_50	195253.Syn6312_0894	96.7	1.3e-23	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	N/A
COG	UHGV-1516214_50	COG0817	N/A	N/A	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	N/A
structural_annotation	UHGV-1516214_50	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-1516214_51	phrog_757	178.8	0	DNA methyltransferase	other
UniRef90	UHGV-1516214_51	UniRef90_A0A417JTT5	249.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1516214_51	1095750.HMPREF9970_0173	246.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1516214_51	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1516214_51	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A