UHGV-1518526 (vOTU-013451)

Viral Genome: UHGV-1518526

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1518526
vOTU ID	vOTU-013451
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0312107
Associated BioSample	SAMN05194695
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.87 (High-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.981
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.51
Jumbo phage	No

Genome content
Genome length (bp)	41,791
GC content	55.01%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	90%
Average CDS length (bps)	571.18
Total tRNA genes	6
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.87)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1518526_1	K14059	138.0	1.10001e-40	int; integrase	N/A
PHROG	UHGV-1518526_1	phrog_1	160.6	0	integrase	integration and excision
UniRef90	UHGV-1518526_1	UniRef90_A0A6N7TNQ4	723.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1518526_1	411471.SUBVAR_05137	263.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1518526_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1518526_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1518526_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1518526_2	UniRef90_A0A6N7TLT0	336.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1518526_2	266265.Bxe_A3948	53.5	0.000000628	Helix-turn-helix domain	N/A
Pfam	UHGV-1518526_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1518526_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1518526_2	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1518526_5	phrog_888	112.5	3.4e-34	N/A	unknown function
UniRef90	UHGV-1518526_5	UniRef90_A0A6N7TMA2	353.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-1518526_5	1151292.QEW_1347	77.8	0.0000000000000268	Short C-terminal domain	N/A
Pfam	UHGV-1518526_5	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-1518526_5	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-1518526_5	PF15947,PF14471	N/A	N/A	N/A	N/A
PHROG	UHGV-1518526_7	phrog_8	43.8	0.0000000000057	transcriptional regulator	transcription regulation
UniRef90	UHGV-1518526_7	UniRef90_A0A8J6IPF5	67.8	0.0000000000043	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1518526_7	1378168.N510_01712	68.6	0.00000000000195	N/A	N/A
Pfam	UHGV-1518526_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1518526_7	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1518526_8	phrog_4652	91.3	2e-27	N/A	unknown function
eggNOG-mapper	UHGV-1518526_8	397290.C810_01459	169.0	0	N/A	N/A
structural_annotation	UHGV-1518526_8	TIGR02582,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-1518526_9	phrog_15946	78.3	6.7e-24	N/A	unknown function
eggNOG-mapper	UHGV-1518526_9	1041147.AUFB01000014_gene330	63.9	0.000000000266	N/A	N/A
UniRef90	UHGV-1518526_10	UniRef90_UPI0018995761	79.0	4.74e-18	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-1518526_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1518526_10	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1518526_11	phrog_463	136.7	1.7e-40	anti-repressor	transcription regulation
UniRef90	UHGV-1518526_11	UniRef90_UPI001C039A6C	255.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1518526_11	476272.RUMHYD_03308	175.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1518526_11	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1518526_11	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1518526_11	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1518526_11	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
KOfam	UHGV-1518526_12	K17343	61.1	1.2e-17	PRPH2, TSPAN22; peripherin-2	N/A
PHROG	UHGV-1518526_12	phrog_4433	181.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1518526_12	33035.JPJF01000122_gene2458	100.0	1.11e-21	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1518526_12	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1518526_12	NF007410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1518526_14	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1518526_15	PF09537	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1518526_17	PF14120	N/A	N/A	N/A	N/A
PHROG	UHGV-1518526_19	phrog_561	125.0	6.2e-37	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1518526_19	UniRef90_A0A1G8PW75	149.0	4.96999e-41	RecT family protein	N/A
eggNOG-mapper	UHGV-1518526_19	563192.HMPREF0179_00147	154.0	1.00053e-42	N/A	N/A
structural_annotation	UHGV-1518526_19	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1518526_20	K03111	141.1	1.19993e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1518526_20	phrog_44	144.3	6.19374e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1518526_20	UniRef90_UPI001C00AA91	218.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1518526_20	718252.FP2_06770	208.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1518526_20	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1518526_20	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1518526_20	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1518526_20	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1518526_20	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1518526_21	phrog_15768	130.5	1.4e-38	N/A	unknown function
UniRef90	UHGV-1518526_21	UniRef90_A0A844D5V0	186.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1518526_21	748224.HMPREF9436_03357	132.0	4.58e-35	N/A	N/A
Pfam	UHGV-1518526_21	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1518526_21	PF19808	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1518526_22	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1518526_24	phrog_757	225.3	0	DNA methyltransferase	other
UniRef90	UHGV-1518526_24	UniRef90_A0A3E2U1Y9	223.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1518526_24	748224.HMPREF9436_03069	229.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1518526_24	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1518526_24	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1518526_25	phrog_3136	115.7	1.8e-34	N/A	unknown function
UniRef90	UHGV-1518526_25	UniRef90_A0A6N7TMC2	222.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1518526_25	1235793.C809_02645	57.0	0.000000343	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1518526_25	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1518526_25	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-1518526_26	K01160	58.8	1.7e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1518526_26	phrog_34	57.1	4.1e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1518526_26	UniRef90_A0A6N7TND6	225.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1518526_26	875454.BAEW01000002_gene491	132.0	3.08e-38	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1518526_26	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1518526_26	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1518526_26	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1518526_28	phrog_36	68.9	8.3e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1518526_28	UniRef90_A0A6N7TNN9	277.0	0	N/A	N/A
eggNOG-mapper	UHGV-1518526_28	748224.HMPREF9436_01463	79.7	5.69e-17	N/A	N/A
Pfam	UHGV-1518526_28	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1518526_28	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
UniRef90	UHGV-1518526_29	UniRef90_UPI0018CC2891	113.0	1.81e-28	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1518526_29	1226322.HMPREF1545_00042	108.0	1.81e-27	N/A	N/A
structural_annotation	UHGV-1518526_29	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-1518526_30	K06909	142.3	4.30058e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1518526_30	phrog_10250	175.0	0	N/A	unknown function
UniRef90	UHGV-1518526_30	UniRef90_A0A844D8I4	848.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1518526_30	411490.ANACAC_00783	490.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1518526_30	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1518526_30	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1518526_30	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1518526_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1518526_30	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1518526_31	phrog_64	127.8	4.2e-38	portal protein	head and packaging
UniRef90	UHGV-1518526_31	UniRef90_A0A6N7TNT3	880.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1518526_31	642492.Clole_2764	87.0	0.00000000000000176	phage portal protein, SPP1	N/A
Pfam	UHGV-1518526_31	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1518526_31	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1518526_33	phrog_2468	82.4	3.1e-24	head morphogenesis	head and packaging
UniRef90	UHGV-1518526_33	UniRef90_A0A6N7TLR7	594.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1518526_33	386415.NT01CX_2177	82.4	0.0000000000000185	Phage Mu protein F like protein	N/A
Pfam	UHGV-1518526_33	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1518526_33	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1518526_33	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1518526_35	phrog_5	51.7	0.000000000000022	tail completion or Neck1 protein	connector
UniRef90	UHGV-1518526_35	UniRef90_A0A6N7TNP6	301.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1518526_35	1123309.AQYB01000018_gene814	96.3	1.76e-23	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1518526_35	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1518526_35	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1518526_37	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1518526_38	phrog_544	145.8	2.90069e-43	major head protein	head and packaging
UniRef90	UHGV-1518526_38	UniRef90_R0BKA1	431.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1518526_38	476272.RUMHYD_01776	327.0	0	N/A	N/A
structural_annotation	UHGV-1518526_38	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1518526_40	phrog_17977	42.9	0.000000000007	N/A	unknown function
UniRef90	UHGV-1518526_40	UniRef90_A0A844DHJ8	117.0	9.35e-32	Phage head closure protein	N/A
structural_annotation	UHGV-1518526_40	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1518526_41	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-1518526_42	phrog_885	64.8	1.1e-18	major tail protein	tail
eggNOG-mapper	UHGV-1518526_42	1111121.HMPREF1247_0789	158.0	0	N/A	N/A
structural_annotation	UHGV-1518526_42	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1518526_45	phrog_28775	124.4	8.60001e-40	tail length tape measure protein	tail
UniRef90	UHGV-1518526_45	UniRef90_A0A6N7TLD3	990.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-1518526_45	1216932.CM240_0683	127.0	3.34e-27	tape measure	N/A
Pfam	UHGV-1518526_45	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1518526_45	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1518526_45	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1518526_45	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1518526_46	phrog_33	44.2	0.0000000000036	distal tail protein Dit	tail
UniRef90	UHGV-1518526_46	UniRef90_A0A417QGC1	124.0	2.47e-31	MtfA protein	N/A
eggNOG-mapper	UHGV-1518526_46	1235792.C808_00094	114.0	7.88e-28	phage tail	N/A
COG	UHGV-1518526_46	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1518526_46	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1518526_47	phrog_3558	220.0	0	tail protein	tail
UniRef90	UHGV-1518526_47	UniRef90_UPI001C01D15B	160.0	1.5e-38	phage tail protein	N/A
eggNOG-mapper	UHGV-1518526_47	1235799.C818_04233	102.0	3e-20	Prophage endopeptidase tail	N/A
Pfam	UHGV-1518526_47	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-1518526_47	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1518526_47	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1518526_48	657322.FPR_13530	65.1	0.0000000116	domain, Protein	N/A
COG	UHGV-1518526_48	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-1518526_49	phrog_2310	56.9	2.1e-16	N/A	unknown function
KOfam	UHGV-1518526_50	K07273	167.1	0	acm; lysozyme	N/A
PHROG	UHGV-1518526_50	phrog_291	128.3	6.4e-38	endolysin	lysis
UniRef90	UHGV-1518526_50	UniRef90_A0A564U0D3	347.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1518526_50	718252.FP2_04890	219.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1518526_50	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1518526_50	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1518526_50	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1518526_52	phrog_15303	117.3	6.3e-35	N/A	unknown function
Pfam	UHGV-1518526_52	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-1518526_53	K24213	75.6	4.6e-22	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-1518526_53	phrog_6320	99.5	4.9e-29	tail fiber protein	tail
UniRef90	UHGV-1518526_53	UniRef90_UPI0018835F0C	572.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1518526_53	411483.FAEPRAA2165_00757	174.0	0	N/A	N/A
Pfam	UHGV-1518526_53	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-1518526_53	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1518526_56	phrog_99	55.6	8.5e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1518526_56	UniRef90_A0A0K9N8D8	90.5	2.19e-18	Putative AP2 domain protein	N/A
eggNOG-mapper	UHGV-1518526_56	742740.HMPREF9474_00071	87.4	5.14e-18	N/A	N/A
Pfam	UHGV-1518526_56	PF00847	N/A	N/A	AP2 domain	AP2
structural_annotation	UHGV-1518526_56	PF18337,PF00847	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1518526_57	1235798.C817_04600	56.6	0.00000000625	N/A	N/A
structural_annotation	UHGV-1518526_57	PF13560,NF040522	N/A	N/A	N/A	N/A
PHROG	UHGV-1518526_59	phrog_3754	90.6	1.5e-26	N/A	unknown function
eggNOG-mapper	UHGV-1518526_59	1485543.JMME01000025_gene2462	104.0	9.78e-28	N/A	N/A
PHROG	UHGV-1518526_60	phrog_21718	89.0	5.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-1518526_60	397290.C810_05210	80.1	8.11e-17	N/A	N/A
PHROG	UHGV-1518526_61	phrog_22984	70.3	2.6e-20	N/A	unknown function
PHROG	UHGV-1518526_62	phrog_16490	198.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1518526_62	397290.C810_01328	126.0	1.4e-31	N/A	N/A
PHROG	UHGV-1518526_64	phrog_20016	199.8	0	N/A	unknown function
UniRef90	UHGV-1518526_64	UniRef90_A0A285PT46	208.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1518526_64	1226322.HMPREF1545_00077	179.0	0	N/A	N/A
structural_annotation	UHGV-1518526_64	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1518526_65	PF12510	N/A	N/A	N/A	N/A