UHGV-1520317 (vOTU-066290)

Viral Genome: UHGV-1520317

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1520317
vOTU ID	vOTU-066290
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0277864
Associated BioSample	SAMEA3664799
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.7 (High-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9811
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.01
Jumbo phage	No

Genome content
Genome length (bp)	39,752
GC content	39.38%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	93%
Average CDS length (bps)	708.12
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 96.7)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1520317_1	1219626.HMPREF1639_08040	46.6	0.00000202	helix_turn_helix, Arsenical Resistance Operon Repressor	N/A
COG	UHGV-1520317_1	COG0640	N/A	N/A	DNA-binding transcriptional regulator, ArsR family	N/A
PHROG	UHGV-1520317_3	phrog_21357	131.0	6.8e-39	endolysin	lysis
UniRef90	UHGV-1520317_3	UniRef90_UPI00156F8A64	482.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-1520317_3	693746.OBV_19030	143.0	1.68e-39	CHAP domain	N/A
Pfam	UHGV-1520317_3	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1520317_3	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1520317_3	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1520317_3	PF01471,PF00877,TIGR02594,TIGR03979,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_4	phrog_199	50.9	0.000000000000017	holin	lysis
UniRef90	UHGV-1520317_4	UniRef90_UPI00156FA5B5	251.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-1520317_4	411470.RUMGNA_02086	136.0	3.34e-39	N/A	N/A
Pfam	UHGV-1520317_4	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1520317_4	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1520317_4	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1520317_4	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_6	phrog_2566	76.4	2.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-1520317_6	1232453.BAIF02000058_gene1639	62.4	0.00000000000687	N/A	N/A
PHROG	UHGV-1520317_7	phrog_16267	188.2	0	N/A	unknown function
UniRef90	UHGV-1520317_7	UniRef90_A0A417V835	2344.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1520317_7	1294142.CINTURNW_1706	211.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1520317_7	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-1520317_7	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-1520317_8	phrog_1401	55.4	0.000000000000001	N/A	unknown function
UniRef90	UHGV-1520317_8	UniRef90_UPI001A9A8A65	56.2	0.000000159	N/A	N/A
structural_annotation	UHGV-1520317_8	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_9	phrog_1194	79.4	3.8e-23	N/A	unknown function
eggNOG-mapper	UHGV-1520317_9	33035.JPJF01000093_gene2242	130.0	7.61e-38	N/A	N/A
structural_annotation	UHGV-1520317_9	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_10	phrog_1535	258.6	0	tail length tape measure protein	tail
UniRef90	UHGV-1520317_10	UniRef90_A0A1C5RRP4	470.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1520317_10	742740.HMPREF9474_03514	403.0	0	tape measure	N/A
COG	UHGV-1520317_10	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1520317_10	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_11	phrog_8355	100.6	5.5e-30	N/A	unknown function
UniRef90	UHGV-1520317_11	UniRef90_UPI001D0684E3	125.0	1.09e-35	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-1520317_11	33035.JPJF01000093_gene2244	94.0	2.6e-24	N/A	N/A
PHROG	UHGV-1520317_12	phrog_8300	92.0	4.8e-27	N/A	unknown function
eggNOG-mapper	UHGV-1520317_12	33035.JPJF01000093_gene2245	102.0	6.05e-27	N/A	N/A
structural_annotation	UHGV-1520317_12	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_13	phrog_820	125.0	3.9e-37	major tail protein	tail
eggNOG-mapper	UHGV-1520317_13	1282664.H354_06691	202.0	0	N/A	N/A
structural_annotation	UHGV-1520317_13	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_14	phrog_2595	105.0	5.2e-31	head-tail connector protein	connector
UniRef90	UHGV-1520317_14	UniRef90_UPI001D0627B3	203.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1520317_14	679192.HMPREF9013_1297	140.0	2.95996e-41	N/A	N/A
Pfam	UHGV-1520317_14	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-1520317_14	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_15	phrog_556	57.2	2.8e-16	minor head protein	head and packaging
eggNOG-mapper	UHGV-1520317_15	742740.HMPREF9474_03509	163.0	0	N/A	N/A
PHROG	UHGV-1520317_16	phrog_8710	140.7	3.59994e-42	N/A	unknown function
eggNOG-mapper	UHGV-1520317_16	742740.HMPREF9474_03508	138.0	4.72994e-41	N/A	N/A
structural_annotation	UHGV-1520317_16	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_17	phrog_541	68.8	7.1e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-1520317_17	742740.HMPREF9474_03507	132.0	2.83e-38	N/A	N/A
PHROG	UHGV-1520317_18	phrog_422	272.8	0	major head protein	head and packaging
UniRef90	UHGV-1520317_18	UniRef90_A0A417V845	630.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1520317_18	663278.Ethha_1589	413.0	0	N/A	N/A
structural_annotation	UHGV-1520317_18	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_19	phrog_2303	142.3	3.50044e-42	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1520317_19	742740.HMPREF9474_03504	178.0	0	N/A	N/A
structural_annotation	UHGV-1520317_20	PF20873	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_22	phrog_581	259.5	0	minor head protein	head and packaging
UniRef90	UHGV-1520317_22	UniRef90_UPI0015715021	1069.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1520317_22	33035.JPJF01000093_gene2255	432.0	0	N/A	N/A
Pfam	UHGV-1520317_22	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1520317_22	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-1520317_22	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_23	phrog_25639	68.4	7.4e-20	N/A	unknown function
eggNOG-mapper	UHGV-1520317_23	742740.HMPREF9474_03502	58.5	0.000000000172	N/A	N/A
PHROG	UHGV-1520317_24	phrog_533	280.0	0	portal protein	head and packaging
UniRef90	UHGV-1520317_24	UniRef90_A0A417V837	1048.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1520317_24	33035.JPJF01000093_gene2257	592.0	0	N/A	N/A
structural_annotation	UHGV-1520317_24	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1520317_25	K06909	104.4	1.3e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1520317_25	phrog_2	71.9	1.2e-20	terminase large subunit	head and packaging
UniRef90	UHGV-1520317_25	UniRef90_A0A417V8L6	919.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1520317_25	1304866.K413DRAFT_0811	742.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-1520317_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1520317_25	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1520317_26	K07474	131.4	1.2e-38	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1520317_26	phrog_51	146.6	1.20512e-43	terminase small subunit	head and packaging
UniRef90	UHGV-1520317_26	UniRef90_A0A417V811	315.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1520317_26	1298920.KI911353_gene4857	213.0	0	Terminase small subunit	N/A
Pfam	UHGV-1520317_26	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1520317_26	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1520317_26	PF03592,COG3728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1520317_28	1220589.CD32_01770	167.0	0	N/A	N/A
AcrCatalog	UHGV-1520317_28	cluster_38765	177.0	0	NA	N/A
structural_annotation	UHGV-1520317_28	PF15931,NF001462,COG2974	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_29	phrog_36	52.4	0.000000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-1520317_29	UniRef90_A0A1Q2C402	216.0	0	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1520317_29	33035.JPJF01000107_gene434	117.0	8.8e-32	Sigma-70, region 4	N/A
Pfam	UHGV-1520317_29	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
NCBIFam	UHGV-1520317_29	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
structural_annotation	UHGV-1520317_29	PF04545,MF_00245,NF001068,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1520317_30	MF_00773,NF011481,COG2888	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_31	phrog_31515	137.8	1.6e-41	N/A	unknown function
structural_annotation	UHGV-1520317_31	PF07338,NF033776	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_32	phrog_17690	177.8	0	N/A	unknown function
UniRef90	UHGV-1520317_32	UniRef90_A0A6L5XWF4	119.0	4.19e-32	3-dehydroquinate synthase	N/A
eggNOG-mapper	UHGV-1520317_32	476272.RUMHYD_03925	103.0	1.22e-26	N/A	N/A
KOfam	UHGV-1520317_33	K14440	113.5	7.3e-34	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-1520317_33	phrog_62	402.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1520317_33	UniRef90_A0A173S305	912.0	0	DNA methylase	N/A
eggNOG-mapper	UHGV-1520317_33	469618.FVAG_01298	592.0	0	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-1520317_33	DpdE_00010	75.4	8.1e-22	DpdE	DPD
Pfam	UHGV-1520317_33	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1520317_33	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1520317_33	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1520317_33	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_34	phrog_93	73.4	3e-21	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1520317_34	UniRef90_A0A173S1G6	221.0	0	VRR-NUC domain	N/A
eggNOG-mapper	UHGV-1520317_34	86416.Clopa_0565	107.0	7.78e-29	VRR-NUC domain-containing protein	N/A
structural_annotation	UHGV-1520317_34	PF18741	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_35	phrog_256	1058.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1520317_35	UniRef90_A0A173S1C5	1626.0	0	Predicted P-loop ATPase and inactivated derivatives	N/A
eggNOG-mapper	UHGV-1520317_35	1321778.HMPREF1982_02544	940.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-1520317_35	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-1520317_35	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-1520317_35	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
KOfam	UHGV-1520317_36	K02334	894.5	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-1520317_36	phrog_17	410.3	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1520317_36	UniRef90_A0A173S361	1334.0	0	DNA polymerase I, thermostable	N/A
eggNOG-mapper	UHGV-1520317_36	86416.Clopa_0561	750.0	0	DNA polymerase	N/A
Pfam	UHGV-1520317_36	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-1520317_36	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-1520317_36	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_37	phrog_112	214.0	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1520317_37	UniRef90_UPI0009F98B20	231.0	0	N/A	N/A
eggNOG-mapper	UHGV-1520317_37	1449126.JQKL01000006_gene839	222.0	0	N/A	N/A
Pfam	UHGV-1520317_37	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-1520317_37	PF10991,MF_04153,NF005241	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_38	phrog_69	332.5	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1520317_38	UniRef90_R7MZ29	393.0	0	N/A	N/A
eggNOG-mapper	UHGV-1520317_38	469618.FVAG_01292	372.0	0	N/A	N/A
Pfam	UHGV-1520317_38	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-1520317_38	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-1520317_38	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_39	phrog_18562	135.9	2.5e-40	N/A	unknown function
eggNOG-mapper	UHGV-1520317_39	717606.PaecuDRAFT_3099	69.3	0.000000000000938	N/A	N/A
PHROG	UHGV-1520317_44	phrog_6058	103.4	8.5e-31	N/A	unknown function
eggNOG-mapper	UHGV-1520317_44	1256908.HMPREF0373_03412	76.3	3.55e-17	N/A	N/A
structural_annotation	UHGV-1520317_44	PF12728,NF040990	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_45	phrog_11939	145.0	9.24857e-44	N/A	unknown function
eggNOG-mapper	UHGV-1520317_45	1004785.AMBLS11_01120	93.6	1.69e-24	N/A	N/A
structural_annotation	UHGV-1520317_45	PF13031	N/A	N/A	N/A	N/A
UniRef90	UHGV-1520317_47	UniRef90_A0A5B3G6T8	154.0	0	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1520317_47	97139.C824_00056	49.7	0.000000662	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1520317_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1520317_47	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1520317_48	K14056	42.7	0.0000000000086	puuR; HTH-type transcriptional regulator, repressor for puuD	N/A
UniRef90	UHGV-1520317_48	UniRef90_L1Q6Z0	162.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1520317_48	411490.ANACAC_00814	97.1	1.24e-25	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-1520317_48	retron_type_VI_hth_cluster2_1	44.8	0.0000000000035	N/A	Retron
Pfam	UHGV-1520317_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1520317_48	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1520317_48	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_49	phrog_2967	69.6	3.8e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1520317_49	UniRef90_A0A374AM30	276.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1520317_49	411460.RUMTOR_02056	120.0	8.78e-33	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-1520317_49	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1520317_49	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1520317_49	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_50	phrog_87	95.6	3.5e-28	metallo-protease	other
UniRef90	UHGV-1520317_50	UniRef90_A0A173S221	272.0	0	Metallopeptidase immA	N/A
eggNOG-mapper	UHGV-1520317_50	411460.RUMTOR_02055	186.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-1520317_50	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1520317_50	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1520317_50	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_51	phrog_4980	104.2	2.9e-32	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1520317_51	UniRef90_UPI00191E8510	461.0	0	Ltp family lipoprotein	N/A
eggNOG-mapper	UHGV-1520317_51	1120998.AUFC01000030_gene2202	73.9	0.000000000000894	Membrane	N/A
Pfam	UHGV-1520317_51	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-1520317_51	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1520317_51	PF18933,PF02631,MF_02248,MF_01114,NF008627,NF001062,COG5435,COG2137	N/A	N/A	N/A	N/A
PHROG	UHGV-1520317_52	phrog_10226	226.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1520317_52	1121091.AUMP01000069_gene1397	170.0	0	Restriction endonuclease	N/A
COG	UHGV-1520317_52	COG1715	N/A	N/A	Restriction endonuclease Mrr	N/A
structural_annotation	UHGV-1520317_52	COG4127	N/A	N/A	N/A	N/A