UHGV-1522220 (vOTU-078320)

Viral Genome: UHGV-1522220

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1522220
vOTU ID	vOTU-078320
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0238906
Associated BioSample	SAMEA2338668
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.22 (High-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9733
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.07
Jumbo phage	No

Genome content
Genome length (bp)	34,296
GC content	60.19%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	43
CDS density	92%
Average CDS length (bps)	731.09
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.22)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1522220_5	phrog_9534	245.9	0	head protein	head and packaging
eggNOG-mapper	UHGV-1522220_5	748224.HMPREF9436_03323	197.0	0	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-1522220_5	PF21567	N/A	N/A	N/A	N/A
PHROG	UHGV-1522220_6	phrog_538	179.3	0	minor tail protein	tail
UniRef90	UHGV-1522220_6	UniRef90_A0A4U7JBL2	96.3	6.42e-19	Siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-1522220_6	748224.HMPREF9436_03324	446.0	0	N/A	N/A
Pfam	UHGV-1522220_6	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-1522220_6	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1522220_7	phrog_36410	68.4	7.8e-20	N/A	unknown function
UniRef90	UHGV-1522220_7	UniRef90_UPI00130E98E0	548.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1522220_7	748224.HMPREF9436_03325	300.0	0	Phage tail protein	N/A
structural_annotation	UHGV-1522220_7	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1522220_8	phrog_28775	761.4	0	tail length tape measure protein	tail
UniRef90	UHGV-1522220_8	UniRef90_UPI00030AC5DB	1136.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-1522220_8	748224.HMPREF9436_03326	200.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1522220_8	PF20155	N/A	N/A	Tape measure protein	TMP_3
COG	UHGV-1522220_8	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1522220_8	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1522220_9	phrog_706	103.3	2.2e-30	N/A	unknown function
UniRef90	UHGV-1522220_9	UniRef90_D4K437	390.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1522220_9	718252.FP2_06590	390.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1522220_9	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1522220_9	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1522220_10	phrog_4450	115.3	4.1e-34	N/A	unknown function
structural_annotation	UHGV-1522220_10	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-1522220_11	phrog_820	85.4	5e-25	major tail protein	tail
eggNOG-mapper	UHGV-1522220_11	718252.FP2_06610	326.0	0	N/A	N/A
structural_annotation	UHGV-1522220_11	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1522220_12	phrog_3266	131.8	2.7e-39	tail completion	connector
eggNOG-mapper	UHGV-1522220_12	718252.FP2_06620	282.0	0	N/A	N/A
structural_annotation	UHGV-1522220_12	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1522220_13	phrog_556	88.4	5.1e-26	minor head protein	head and packaging
UniRef90	UHGV-1522220_13	UniRef90_D4K441	292.0	0	Minor capsid	N/A
eggNOG-mapper	UHGV-1522220_13	718252.FP2_06630	292.0	0	Minor capsid protein	N/A
Pfam	UHGV-1522220_13	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1522220_13	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1522220_14	phrog_3366	78.7	7.7e-23	N/A	unknown function
structural_annotation	UHGV-1522220_14	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-1522220_15	phrog_541	74.0	1.9e-21	head-tail adaptor	connector
PHROG	UHGV-1522220_16	phrog_267	84.8	9.8e-25	major head protein	head and packaging
UniRef90	UHGV-1522220_16	UniRef90_A0A0D8J2H9	360.0	0	p22 coat protein 5	N/A
eggNOG-mapper	UHGV-1522220_16	718252.FP2_06660	523.0	0	N/A	N/A
structural_annotation	UHGV-1522220_16	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1522220_17	phrog_194	61.7	1.5e-17	head scaffolding protein	head and packaging
UniRef90	UHGV-1522220_17	UniRef90_D4K444	340.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1522220_17	748224.HMPREF9436_03336	234.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-1522220_17	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1522220_17	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1522220_19	phrog_581	350.8	0	minor head protein	head and packaging
UniRef90	UHGV-1522220_19	UniRef90_D4K446	969.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1522220_19	718252.FP2_06690	969.0	0	N/A	N/A
Pfam	UHGV-1522220_19	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1522220_19	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1522220_19	PF06152,PF12106	N/A	N/A	N/A	N/A
PHROG	UHGV-1522220_20	phrog_533	264.2	0	portal protein	head and packaging
UniRef90	UHGV-1522220_20	UniRef90_A0A7G9WF85	361.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1522220_20	718252.FP2_06700	976.0	0	N/A	N/A
structural_annotation	UHGV-1522220_20	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1522220_21	K06909	83.4	3.4e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1522220_21	phrog_2	115.8	6.2e-34	terminase large subunit	head and packaging
UniRef90	UHGV-1522220_21	UniRef90_A0A844EGH8	755.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1522220_21	1449050.JNLE01000003_gene3895	393.0	0	phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1522220_21	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1522220_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1522220_21	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1522220_22	K07474	145.5	5.19882e-43	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1522220_22	phrog_51	136.5	1.50001e-40	terminase small subunit	head and packaging
UniRef90	UHGV-1522220_22	UniRef90_A0A2A7AI72	242.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1522220_22	742740.HMPREF9474_03499	184.0	0	Terminase Small Subunit	N/A
Pfam	UHGV-1522220_22	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1522220_22	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1522220_22	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1522220_23	phrog_36	89.8	3.4e-26	transcriptional regulator	transcription regulation
UniRef90	UHGV-1522220_23	UniRef90_A0A3E2U224	127.0	3.92e-35	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1522220_23	748224.HMPREF9436_01463	114.0	6.58e-31	N/A	N/A
structural_annotation	UHGV-1522220_23	PF04545,MF_00674,NF005248,COG1595	N/A	N/A	N/A	N/A
KOfam	UHGV-1522220_24	K01160	46.2	0.0000000000011	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1522220_24	phrog_140	85.8	5.7e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1522220_24	UniRef90_UPI00122CFAB3	287.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1522220_24	478749.BRYFOR_07588	149.0	1.26117e-44	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1522220_24	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1522220_24	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1522220_24	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1522220_25	K07505	369.7	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-1522220_25	phrog_2597	1090.0	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1522220_25	UniRef90_UPI00122CD8B8	1510.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1522220_25	552396.HMPREF0863_02435	866.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-1522220_25	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-1522220_25	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1522220_25	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-1522220_25	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-1522220_26	K17677	343.7	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1522220_26	phrog_16	267.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1522220_26	UniRef90_UPI00122D00F7	1020.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-1522220_26	610130.Closa_1369	734.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-1522220_26	mREase_IV_00005	130.7	1.2e-38	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1522220_26	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1522220_26	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1522220_26	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1522220_26	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1522220_27	phrog_2698	191.8	0	N/A	unknown function
UniRef90	UHGV-1522220_27	UniRef90_UPI00122C4984	327.0	0	N/A	N/A
eggNOG-mapper	UHGV-1522220_27	394503.Ccel_3308	132.0	2.14e-37	N/A	N/A
structural_annotation	UHGV-1522220_27	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1522220_28	phrog_124	225.3	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1522220_28	UniRef90_UPI00122C2B12	695.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1522220_28	645991.Sgly_0321	364.0	0	AAA domain	N/A
Pfam	UHGV-1522220_28	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1522220_28	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-1522220_29	K03546	56.7	2.9e-16	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1522220_29	phrog_1499	455.0	0	N/A	unknown function
UniRef90	UHGV-1522220_29	UniRef90_UPI00122C2DDE	733.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1522220_29	1235798.C817_04766	491.0	0	AAA ATPase domain	N/A
Pfam	UHGV-1522220_29	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1522220_29	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1522220_29	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-1522220_30	phrog_1733	61.1	8.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-1522220_30	665956.HMPREF1032_03597	186.0	0	DNA binding	N/A
COG	UHGV-1522220_30	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
UniRef90	UHGV-1522220_31	UniRef90_UPI001D0E65C2	184.0	0	N/A	N/A
structural_annotation	UHGV-1522220_31	PF12957	N/A	N/A	N/A	N/A
UniRef90	UHGV-1522220_33	UniRef90_A0A2A7BGV7	84.0	1.27e-19	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1522220_33	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-1522220_33	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1522220_33	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1522220_35	718252.FP2_06840	59.3	0.000000000537	BRO family, N-terminal domain	N/A
COG	UHGV-1522220_35	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1522220_36	PF13601,MF_01819,TIGR03433,COG1695	N/A	N/A	N/A	N/A
KOfam	UHGV-1522220_38	K22300	61.9	1.4e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1522220_38	phrog_4	50.1	0.000000000000064	transcriptional repressor	transcription regulation
UniRef90	UHGV-1522220_38	UniRef90_A0A564SVW9	178.0	0	HTH-type transcriptional regulator ImmR	N/A
eggNOG-mapper	UHGV-1522220_38	748224.HMPREF9436_01444	136.0	2e-39	N/A	N/A
Pfam	UHGV-1522220_38	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1522220_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1522220_38	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1522220_39	PF16900,NF040991	N/A	N/A	N/A	N/A
KOfam	UHGV-1522220_40	K14059	147.3	2.00386e-43	int; integrase	N/A
PHROG	UHGV-1522220_40	phrog_1	138.7	4.90006e-41	integrase	integration and excision
UniRef90	UHGV-1522220_40	UniRef90_A0A564SUY5	728.0	0	Tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-1522220_40	748224.HMPREF9436_03382	325.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1522220_40	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1522220_40	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1522220_40	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-1522220_41	phrog_28749	182.9	0	N/A	unknown function
UniRef90	UHGV-1522220_41	UniRef90_UPI0012DDA932	160.0	0	N/A	N/A
eggNOG-mapper	UHGV-1522220_41	411483.FAEPRAA2165_03262	169.0	0	N/A	N/A
Pfam	UHGV-1522220_41	PF19537	N/A	N/A	N/A	DUF6061
structural_annotation	UHGV-1522220_41	PF19537	N/A	N/A	N/A	N/A
UniRef90	UHGV-1522220_42	UniRef90_UPI001CBC6CBB	60.1	0.0000000002	transposase	N/A
eggNOG-mapper	UHGV-1522220_42	411483.FAEPRAA2165_00409	114.0	5.35e-33	N/A	N/A
UniRef90	UHGV-1522220_43	UniRef90_C7H2B3	729.0	0	Plasmid recombination enzyme	N/A
eggNOG-mapper	UHGV-1522220_43	411483.FAEPRAA2165_00408	729.0	0	N/A	N/A
Pfam	UHGV-1522220_43	PF01076	N/A	N/A	Plasmid recombination enzyme	Mob_Pre
COG	UHGV-1522220_43	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1522220_43	PF01076,NF041497,NF038178	N/A	N/A	N/A	N/A