UHGV-1522282 (vOTU-036340)

Viral Genome: UHGV-1522282

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1522282
vOTU ID	vOTU-036340
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0176648
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9803
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.93
Jumbo phage	No

Genome content
Genome length (bp)	22,753
GC content	52.42%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	88%
Average CDS length (bps)	406.35
Total tRNA genes	6
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 55)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1522282_1	K14059	156.8	0	int; integrase	N/A
PHROG	UHGV-1522282_1	phrog_1	158.3	0	integrase	integration and excision
UniRef90	UHGV-1522282_1	UniRef90_A0A1C5W824	551.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1522282_1	445972.ANACOL_01797	294.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1522282_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1522282_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1522282_1	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-1522282_2	UniRef90_A0A8D9UHA6	161.0	0	Helix-turn-helix XRE-family like protein	N/A
structural_annotation	UHGV-1522282_2	PF12844,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1522282_5	UniRef90_UPI001C020D87	52.8	0.00000223	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1522282_5	411459.RUMOBE_00961	51.6	0.00000142	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-1522282_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1522282_5	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1522282_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1522282_8	UniRef90_UPI000F5312D8	48.9	0.00000643	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1522282_8	1292035.H476_1409	50.4	0.000000644	N/A	N/A
Pfam	UHGV-1522282_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1522282_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1522282_8	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1522282_9	UniRef90_A0A8D9PDM8	72.0	0.00000000000000287	Pyocin activator protein	N/A
structural_annotation	UHGV-1522282_12	PF00412	N/A	N/A	N/A	N/A
PHROG	UHGV-1522282_14	phrog_155	88.0	1.2e-25	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1522282_14	UniRef90_A0A1C6J8G0	264.0	0	ERF superfamily	N/A
eggNOG-mapper	UHGV-1522282_14	1268072.PSAB_05935	177.0	0	ERF superfamily	N/A
Pfam	UHGV-1522282_14	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1522282_14	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1522282_15	phrog_72	51.1	0.0000000000000077	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1522282_15	UniRef90_A0A8D9PDS2	263.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-1522282_15	445972.ANACOL_01825	147.0	1.66054e-42	N/A	N/A
structural_annotation	UHGV-1522282_15	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1522282_16	phrog_7566	69.6	3.5e-20	N/A	unknown function
UniRef90	UHGV-1522282_16	UniRef90_A0A8D9UHC0	127.0	2.7e-36	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-1522282_16	693746.OBV_25470	92.4	4.1e-23	N/A	N/A
KOfam	UHGV-1522282_17	K03111	119.7	3.8e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1522282_17	phrog_44	122.1	4.7e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1522282_17	UniRef90_A0A810PUK9	233.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1522282_17	1203606.HMPREF1526_01880	109.0	4.67e-29	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1522282_17	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1522282_17	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1522282_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1522282_17	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1522282_17	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1522282_19	phrog_16304	134.5	8.4e-40	N/A	unknown function
UniRef90	UHGV-1522282_19	UniRef90_A0A810PZI8	377.0	0	N/A	N/A
eggNOG-mapper	UHGV-1522282_19	498761.HM1_0053	92.4	1.95e-19	HNH endonuclease	N/A
Pfam	UHGV-1522282_19	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1522282_19	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1522282_19	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1522282_20	K02315	122.0	6.4e-36	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1522282_20	phrog_50	120.8	1.4e-35	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1522282_20	UniRef90_A0A810Q3X8	455.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-1522282_20	445972.ANACOL_01829	185.0	0	N/A	N/A
Pfam	UHGV-1522282_20	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1522282_20	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1522282_20	PF01695,MF_01919,NF005378,COG1484	N/A	N/A	N/A	N/A
KOfam	UHGV-1522282_21	K00558	41.7	0.0000000000085	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1522282_21	phrog_757	119.0	2.9e-35	DNA methyltransferase	other
UniRef90	UHGV-1522282_21	UniRef90_A0A8D9PDD1	360.0	0	DNA (Cytosine 5) methyltransferase	N/A
eggNOG-mapper	UHGV-1522282_21	622312.ROSEINA2194_01264	339.0	0	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-1522282_21	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1522282_21	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1522282_21	PF00145,MF_00341,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-1522282_23	UniRef90_A0A0R2EJW7	51.2	0.00000639	HTH_11 domain-containing protein	N/A
structural_annotation	UHGV-1522282_23	TIGR00122,COG1654	N/A	N/A	N/A	N/A
KOfam	UHGV-1522282_24	K00390	58.5	6.7e-17	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1522282_24	phrog_424	133.3	1.5e-39	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1522282_24	UniRef90_A0A1H7KWC5	321.0	0	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	N/A
eggNOG-mapper	UHGV-1522282_24	665956.HMPREF1032_00140	290.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-1522282_24	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1522282_24	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1522282_24	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1522282_26	K01160	72.2	1.1e-20	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1522282_26	phrog_34	61.9	1.1e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1522282_26	UniRef90_UPI0018ABA1B6	157.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1522282_26	796940.HMPREF9628_00163	114.0	7.3e-31	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1522282_26	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1522282_26	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1522282_26	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1522282_29	K14440	58.5	2.1e-26	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-1522282_29	phrog_62	204.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1522282_29	UniRef90_A0A845MVG4	629.0	0	Helicase	N/A
eggNOG-mapper	UHGV-1522282_29	394503.Ccel_3060	522.0	0	SNF2 family N-terminal domain	N/A
Pfam	UHGV-1522282_29	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1522282_29	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1522282_29	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1522282_29	PF06862,MF_01821,NF003426,COG0553	N/A	N/A	N/A	N/A
KOfam	UHGV-1522282_30	K24451	133.4	1.4e-39	zim; modification methylase	N/A
PHROG	UHGV-1522282_30	phrog_67	109.4	2.9e-32	DNA methyltransferase	other
UniRef90	UHGV-1522282_30	UniRef90_A0A845MWG4	529.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1522282_30	1120971.AUCA01000053_gene371	401.0	0	DNA methylase	N/A
PADLOC	UHGV-1522282_30	MTase_II_00139	108.2	1.1e-31	Type II methyltransferase	RM
Pfam	UHGV-1522282_30	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1522282_30	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1522282_30	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1522282_31	phrog_22529	115.7	2.3e-34	N/A	unknown function
UniRef90	UHGV-1522282_31	UniRef90_A0A810Q1V0	201.0	0	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-1522282_31	411463.EUBVEN_00667	110.0	5.05e-28	3D domain	N/A
Pfam	UHGV-1522282_31	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-1522282_31	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-1522282_31	PF06725,MF_02071,TIGR00413,COG3584	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1522282_41	693746.OBV_18010	134.0	6.32e-38	N/A	N/A
structural_annotation	UHGV-1522282_41	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1522282_43	phrog_606	40.4	0.000000000024	terminase small subunit	head and packaging
UniRef90	UHGV-1522282_43	UniRef90_UPI001D07B715	115.0	4.52e-29	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1522282_43	1235793.C809_00539	55.5	0.000000514	N/A	N/A
Pfam	UHGV-1522282_43	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1522282_43	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-1522282_46	phrog_6244	52.3	0.000000000000012	N/A	unknown function
eggNOG-mapper	UHGV-1522282_46	1354300.AUQY01000005_gene215	109.0	3.47e-30	N/A	N/A