UHGV-1522414 (vOTU-070050)

Viral Genome: UHGV-1522414

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1522414
vOTU ID	vOTU-070050
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0237486
Associated BioSample	SAMEA3541572
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.01 (High-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9799
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	3.3
Jumbo phage	No

Genome content
Genome length (bp)	34,340
GC content	58.15%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	42
CDS density	90%
Average CDS length (bps)	736.57
Total tRNA genes	5
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 93.01)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1522414_1	UniRef90_UPI00164AED9E	85.1	2.89e-19	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1522414_1	1235798.C817_04600	79.0	1.24e-17	N/A	N/A
structural_annotation	UHGV-1522414_1	NF040522,COG2944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1522414_4	PF17917	N/A	N/A	N/A	N/A
PHROG	UHGV-1522414_6	phrog_15863	167.6	0	N/A	unknown function
UniRef90	UHGV-1522414_6	UniRef90_K1RTM4	230.0	0	DnaJ domain protein	N/A
eggNOG-mapper	UHGV-1522414_6	693746.OBV_01780	178.0	0	DnaJ molecular chaperone homology domain	N/A
Pfam	UHGV-1522414_6	PF00226	N/A	N/A	DnaJ domain	DnaJ
COG	UHGV-1522414_6	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
UniRef90	UHGV-1522414_7	UniRef90_A0A316R7E8	66.6	0.000000000000648	RHH_1 domain-containing protein	N/A
structural_annotation	UHGV-1522414_8	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-1522414_9	phrog_7339	133.2	1.7e-39	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1522414_9	UniRef90_A0A8F2F0X6	269.0	0	Metallophosphoesterase	N/A
eggNOG-mapper	UHGV-1522414_9	443254.Marpi_0340	103.0	8.5e-24	metallophosphoesterase	N/A
Pfam	UHGV-1522414_9	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-1522414_9	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
structural_annotation	UHGV-1522414_9	PF12850,MF_00325,NF003118,COG1311	N/A	N/A	N/A	N/A
KOfam	UHGV-1522414_11	K06909	128.4	6.9e-38	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1522414_11	phrog_979	135.7	1.29998e-41	terminase large subunit	head and packaging
UniRef90	UHGV-1522414_11	UniRef90_A0A1M5YHQ5	642.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1522414_11	693746.OBV_01690	516.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-1522414_11	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1522414_11	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1522414_11	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1522414_13	phrog_156	138.7	7.29936e-42	portal protein	head and packaging
eggNOG-mapper	UHGV-1522414_13	693746.OBV_01670	563.0	0	N/A	N/A
structural_annotation	UHGV-1522414_13	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1522414_15	phrog_422	118.8	4.5e-35	major head protein	head and packaging
UniRef90	UHGV-1522414_15	UniRef90_K1S1E0	366.0	0	Gp7 (Fragment)	N/A
eggNOG-mapper	UHGV-1522414_15	693746.OBV_01700	211.0	0	N/A	N/A
Pfam	UHGV-1522414_15	PF13287	N/A	N/A	Fn3 associated	Fn3_assoc
structural_annotation	UHGV-1522414_15	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1522414_16	1519439.JPJG01000011_gene57	87.8	4.06e-20	N/A	N/A
structural_annotation	UHGV-1522414_16	PF11650	N/A	N/A	N/A	N/A
UniRef90	UHGV-1522414_17	UniRef90_A0A4D7ASB8	437.0	0	N/A	N/A
eggNOG-mapper	UHGV-1522414_17	693746.OBV_01680	476.0	0	N/A	N/A
structural_annotation	UHGV-1522414_17	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
PHROG	UHGV-1522414_18	phrog_24267	84.1	1.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-1522414_18	508419.F8J176_9CAUD	108.0	3.11e-23	peptidoglycan catabolic process	N/A
structural_annotation	UHGV-1522414_19	PF10651,NF038186	N/A	N/A	N/A	N/A
KOfam	UHGV-1522414_20	K16628	41.2	0.0000000000047	COL7A; collagen type VII alpha	N/A
eggNOG-mapper	UHGV-1522414_20	189425.PGRAT_28930	59.7	0.000000279	N/A	N/A
Pfam	UHGV-1522414_20	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
KOfam	UHGV-1522414_21	K01104	44.2	0.000000000001	E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]	N/A
UniRef90	UHGV-1522414_21	UniRef90_UPI001BF10870	200.0	0	Tyrosine-protein phosphatase	N/A
eggNOG-mapper	UHGV-1522414_21	610130.Closa_0587	75.5	0.00000000000196	Tyrosine phosphatase family	N/A
Pfam	UHGV-1522414_21	PF13350	N/A	N/A	Tyrosine phosphatase family	Y_phosphatase3
COG	UHGV-1522414_21	COG2365	N/A	N/A	Protein tyrosine/serine phosphatase Oca4	N/A
structural_annotation	UHGV-1522414_21	PF13350,TIGR01244,COG2365	N/A	N/A	N/A	N/A
KOfam	UHGV-1522414_22	K01447	115.2	7.3e-34	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1522414_22	phrog_9611	140.8	8.80015e-42	endolysin	lysis
UniRef90	UHGV-1522414_22	UniRef90_A0A3D1VCL7	403.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-1522414_22	97138.C820_00738	235.0	0	Ami_2	N/A
Pfam	UHGV-1522414_22	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1522414_22	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1522414_22	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1522414_23	phrog_10091	116.9	1.1e-34	holin	lysis
UniRef90	UHGV-1522414_23	UniRef90_R5MCL9	146.0	4.34403e-44	Holin phage phi LC3 family	N/A
eggNOG-mapper	UHGV-1522414_23	445975.COLSTE_02144	131.0	4.41e-39	Bacteriophage holin	N/A
Pfam	UHGV-1522414_23	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1522414_23	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1522414_23	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1522414_23	COG5546	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1522414_24	33035.JPJF01000023_gene3222	48.1	0.00000333	N/A	N/A
eggNOG-mapper	UHGV-1522414_25	693746.OBV_01600	85.5	0.00000000000000244	N/A	N/A
eggNOG-mapper	UHGV-1522414_26	1519439.JPJG01000011_gene53	366.0	0	N/A	N/A
PHROG	UHGV-1522414_27	phrog_474	56.8	5.6e-16	phosphofructokinase	other
UniRef90	UHGV-1522414_27	UniRef90_K1TIM3	239.0	0	N/A	N/A
eggNOG-mapper	UHGV-1522414_27	1203606.HMPREF1526_00237	58.2	0.000000004	N/A	N/A
Pfam	UHGV-1522414_27	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-1522414_27	PF19905	N/A	N/A	N/A	N/A
KOfam	UHGV-1522414_29	K03091	57.3	3.1e-16	sigH; RNA polymerase sporulation-specific sigma factor	N/A
PHROG	UHGV-1522414_29	phrog_351	46.3	3.6e-16	RNA polymerase sigma factor	transcription regulation
eggNOG-mapper	UHGV-1522414_29	521098.Aaci_1081	61.2	0.00000000427	sigma factor activity	N/A
Pfam	UHGV-1522414_29	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
NCBIFam	UHGV-1522414_29	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-1522414_29	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1522414_29	PF04542,MF_00961,TIGR02835,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-1522414_30	K06223	66.8	3.7e-19	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-1522414_30	phrog_56	50.6	0.000000000000041	DNA methyltransferase	other
UniRef90	UHGV-1522414_30	UniRef90_A0A7C3GLS3	67.0	0.000000000000414	DNA adenine methylase (Fragment)	N/A
eggNOG-mapper	UHGV-1522414_30	1007103.AFHW01000155_gene1065	78.2	8.66e-17	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-1522414_30	MTase_II_00030	55.6	0.0000000000000013	Type II methyltransferase	RM
Pfam	UHGV-1522414_30	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-1522414_30	COG0338	N/A	N/A	DNA-adenine methylase	N/A
PHROG	UHGV-1522414_33	phrog_1770	52.9	0.0000000000000068	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1522414_33	536233.CLO_1822	121.0	9.79e-33	N/A	N/A
structural_annotation	UHGV-1522414_33	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-1522414_34	phrog_8489	203.4	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1522414_34	UniRef90_A0A022N9G2	204.0	0	Replisome organizer	N/A
eggNOG-mapper	UHGV-1522414_34	1139219.I569_01402	194.0	0	DnaD domain protein	N/A
COG	UHGV-1522414_34	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1522414_34	PF09681,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-1522414_35	K03111	71.2	2.5e-20	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1522414_35	phrog_44	63.7	4.4e-18	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1522414_35	UniRef90_A0A1C5ZBY6	53.9	0.00000427	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1522414_35	1408437.JNJN01000012_gene314	53.9	0.000000727	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1522414_35	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-1522414_35	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1522414_35	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1522414_36	phrog_14970	254.0	0	N/A	unknown function
UniRef90	UHGV-1522414_36	UniRef90_A0A3P6JH63	214.0	0	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-1522414_36	411470.RUMGNA_02193	217.0	0	double-strand break repair protein	N/A
Pfam	UHGV-1522414_36	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-1522414_36	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1522414_36	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-1522414_39	K00558	154.3	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1522414_39	phrog_116	198.0	0	DNA methyltransferase	other
UniRef90	UHGV-1522414_39	UniRef90_D4JYK0	382.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1522414_39	718252.FP2_16350	382.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1522414_39	oMTase_00004	193.5	0	orphan methyltransferase	RM
Pfam	UHGV-1522414_39	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1522414_39	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1522414_39	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1522414_39	PF00145,TIGR00675	N/A	N/A	N/A	N/A
Pfam	UHGV-1522414_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1522414_40	PF13744,NF007481,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1522414_42	phrog_15773	53.9	0.0000000000000011	N/A	unknown function
dbAPIS	UHGV-1522414_42	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A