UHGV-1522816 (vOTU-131338)

Viral Genome: UHGV-1522816

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1522816
vOTU ID	vOTU-131338
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0224891
Associated BioSample	SAMEA2737952
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.15 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9793
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.69
Jumbo phage	No

Genome content
Genome length (bp)	28,838
GC content	43.35%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	38
CDS density	95%
Average CDS length (bps)	721.03
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 72.15)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1522816_1	phrog_1529	282.4	0	N/A	unknown function
UniRef90	UHGV-1522816_1	UniRef90_A0A5B0DAJ0	443.0	0	N/A	N/A
eggNOG-mapper	UHGV-1522816_1	1336234.JAGN01000025_gene751	69.3	0.000000000000746	N/A	N/A
structural_annotation	UHGV-1522816_1	PF12073,TIGR00739,COG4466	N/A	N/A	N/A	N/A
PHROG	UHGV-1522816_3	phrog_1309	101.9	7.6e-30	endolysin	lysis
UniRef90	UHGV-1522816_3	UniRef90_UPI00069E411A	503.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1522816_3	428127.EUBDOL_01204	198.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1522816_3	PF08460	N/A	N/A	Bacterial SH3 domain	SH3_5
COG	UHGV-1522816_3	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1522816_3	PF08460,NF033202,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-1522816_4	phrog_199	55.1	9.5e-16	holin	lysis
UniRef90	UHGV-1522816_4	UniRef90_A0A428GYA2	253.0	0	Holin family protein	N/A
eggNOG-mapper	UHGV-1522816_4	482234.SCAZ3_03820	138.0	1.72e-40	Bacteriophage holin family	N/A
Pfam	UHGV-1522816_4	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1522816_4	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-1522816_4	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1522816_5	phrog_2566	79.0	3.9e-23	N/A	unknown function
UniRef90	UHGV-1522816_5	UniRef90_A0A0E3WFP1	85.1	5.76e-20	N/A	N/A
eggNOG-mapper	UHGV-1522816_5	59241.E7DNC0_BPDP1	50.1	0.000000737	N/A	N/A
PHROG	UHGV-1522816_7	phrog_1210	709.7	0	PblB-type receptor binding	other
UniRef90	UHGV-1522816_7	UniRef90_UPI00069E4B53	1725.0	0	gp58-like family protein	N/A
eggNOG-mapper	UHGV-1522816_7	999425.HMPREF9186_02047	594.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1522816_7	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1522816_7	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1522816_7	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1522816_7	PF14594,PF00629,PF10528,TIGR01665,NF033675,NF038393,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1522816_8	phrog_33	74.1	3e-21	distal tail protein Dit	tail
UniRef90	UHGV-1522816_8	UniRef90_A0A5B0DB81	464.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1522816_8	1054460.SPPN_00450	315.0	0	N/A	N/A
COG	UHGV-1522816_8	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1522816_8	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1522816_9	phrog_1293	1257.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1522816_9	UniRef90_A0A5B0DBA3	1867.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1522816_9	1282664.H354_07735	1356.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-1522816_9	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1522816_9	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1522816_9	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1522816_9	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-1522816_10	phrog_10068	61.0	1.4e-17	N/A	unknown function
PHROG	UHGV-1522816_11	phrog_187	48.2	0.0000000000002	head-tail adaptor	connector
UniRef90	UHGV-1522816_11	UniRef90_A0A139NGQ9	154.0	0	Putative phage protein	N/A
PHROG	UHGV-1522816_12	phrog_88	126.5	1.8e-37	major tail protein	tail
UniRef90	UHGV-1522816_12	UniRef90_A0A5B0D8M4	372.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1522816_12	1035189.HMPREF9954_1930	311.0	0	Phage tail tube protein	N/A
Pfam	UHGV-1522816_12	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-1522816_12	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1522816_12	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1522816_13	phrog_78	81.9	7.4e-24	tail terminator	connector
UniRef90	UHGV-1522816_13	UniRef90_A0A139RIS6	209.0	0	Putative phage protein	N/A
eggNOG-mapper	UHGV-1522816_13	1035189.HMPREF9954_1931	189.0	0	N/A	N/A
structural_annotation	UHGV-1522816_13	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-1522816_14	UniRef90_A0A139RIK3	216.0	0	N/A	N/A
eggNOG-mapper	UHGV-1522816_14	565653.EGBG_01973	89.7	3.46e-21	N/A	N/A
structural_annotation	UHGV-1522816_14	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1522816_15	phrog_25	43.2	0.0000000000059	head closure Hc1	connector
UniRef90	UHGV-1522816_15	UniRef90_A0A5B0D9H0	266.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-1522816_15	888049.HMPREF8578_0262	223.0	0	N/A	N/A
structural_annotation	UHGV-1522816_15	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1522816_16	phrog_933	60.6	1.7e-17	N/A	unknown function
PHROG	UHGV-1522816_17	phrog_749	107.2	6.6e-32	N/A	unknown function
UniRef90	UHGV-1522816_17	UniRef90_UPI0011E82A9F	178.0	0	phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1522816_17	888049.HMPREF8578_0263	167.0	0	N/A	N/A
structural_annotation	UHGV-1522816_17	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1522816_18	phrog_10	108.9	5.4e-32	major head protein	head and packaging
UniRef90	UHGV-1522816_18	UniRef90_A0A4Y9FPP8	468.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1522816_18	888049.HMPREF8578_0264	673.0	0	Phage capsid family	N/A
Pfam	UHGV-1522816_18	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1522816_18	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1522816_18	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1522816_18	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1522816_19	K01358	128.3	8.1e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1522816_19	phrog_94	238.7	0	head maturation protease	head and packaging
UniRef90	UHGV-1522816_19	UniRef90_F9PY60	473.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1522816_19	1282664.H354_07685	478.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1522816_19	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1522816_19	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1522816_19	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1522816_20	phrog_12	155.7	0	portal protein	head and packaging
UniRef90	UHGV-1522816_20	UniRef90_E6KJ51	701.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-1522816_20	888049.HMPREF8578_0266	701.0	0	portal protein	N/A
Pfam	UHGV-1522816_20	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1522816_20	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1522816_20	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1522816_20	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1522816_21	phrog_903	52.0	0.00000000000001	N/A	unknown function
PHROG	UHGV-1522816_22	phrog_9	289.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1522816_22	UniRef90_X8K5U6	1026.0	0	Putative phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-1522816_22	888049.HMPREF8578_0267	1033.0	0	Terminase	N/A
Pfam	UHGV-1522816_22	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1522816_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1522816_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1522816_22	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1522816_23	phrog_2343	137.4	2.4e-41	terminase small subunit	head and packaging
UniRef90	UHGV-1522816_23	UniRef90_A0A5C5TE72	93.2	2.22e-22	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1522816_23	1035189.HMPREF9954_1940	199.0	0	N/A	N/A
structural_annotation	UHGV-1522816_23	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-1522816_24	K07451	57.5	2.5e-16	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1522816_24	phrog_5956	101.4	5.4e-30	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1522816_24	UniRef90_A0A5B0DAK5	217.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1522816_24	1282664.H354_07665	181.0	0	COG1403 Restriction endonuclease	N/A
Pfam	UHGV-1522816_24	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1522816_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1522816_24	PF05766,NF008448	N/A	N/A	N/A	N/A
PHROG	UHGV-1522816_25	phrog_9423	112.9	9e-34	N/A	unknown function
KOfam	UHGV-1522816_26	K04763	91.8	9.4e-27	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1522816_26	phrog_216	164.6	0	integrase	integration and excision
UniRef90	UHGV-1522816_26	UniRef90_A0A1S5SFD7	355.0	0	Site-specific recombinase integrase family protein	N/A
eggNOG-mapper	UHGV-1522816_26	888049.HMPREF8578_0271	360.0	0	DNA integration	N/A
Pfam	UHGV-1522816_26	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1522816_26	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1522816_26	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-1522816_27	phrog_36	92.7	4.2e-27	transcriptional regulator	transcription regulation
UniRef90	UHGV-1522816_27	UniRef90_A0A5B0DDY7	227.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1522816_27	1123315.AUIP01000003_gene229	113.0	1.77e-30	Transcriptional regulator, RinA family	N/A
Pfam	UHGV-1522816_27	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
NCBIFam	UHGV-1522816_27	TIGR01636.1	N/A	N/A	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-1522816_27	PF05263,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1522816_28	phrog_2169	82.2	3.6e-24	membrane protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1522816_28	UniRef90_A0A081R3G7	64.7	0.0000000000157	Putative membrane protein	N/A
PHROG	UHGV-1522816_29	phrog_478	139.2	1.10002e-41	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1522816_29	UniRef90_A0A285PT53	149.0	8.26766e-44	Prokaryotic membrane lipoprotein lipid attachment site profile	N/A
eggNOG-mapper	UHGV-1522816_29	768486.EHR_00720	184.0	0	N/A	N/A
KOfam	UHGV-1522816_30	K07319	100.1	2e-29	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1522816_30	phrog_23224	229.7	0	DNA methyltransferase	other
UniRef90	UHGV-1522816_30	UniRef90_UPI00128C82F8	460.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1522816_30	1214217.ALNF01000014_gene1390	399.0	0	N-4 methylation of cytosine	N/A
PADLOC	UHGV-1522816_30	MTase_II_00172	88.9	6.5e-28	Type II methyltransferase	RM
Pfam	UHGV-1522816_30	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1522816_30	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1522816_30	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1522816_31	phrog_1580	89.6	1.7e-26	N/A	unknown function
KOfam	UHGV-1522816_32	K02315	155.6	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1522816_32	phrog_50	154.4	1.4013e-45	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1522816_32	UniRef90_A0A5B0DBB9	486.0	0	DNA replication protein DnaC	N/A
eggNOG-mapper	UHGV-1522816_32	1566990.A0A0A0YSG2_9CAUD	298.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-1522816_32	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
structural_annotation	UHGV-1522816_32	PF01695,MF_00377,NF005931,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1522816_33	phrog_2108	52.1	0.0000000000000078	N/A	unknown function
KOfam	UHGV-1522816_34	K02086	86.3	2.9e-25	dnaD; DNA replication protein	N/A
PHROG	UHGV-1522816_34	phrog_5708	239.9	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1522816_34	UniRef90_A0A5B0D924	411.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1522816_34	762051.LKI_09560	161.0	0	DnaD domain protein	N/A
Pfam	UHGV-1522816_34	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1522816_34	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-1522816_34	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1522816_34	TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-1522816_35	phrog_12650	62.5	4e-18	N/A	unknown function
PHROG	UHGV-1522816_36	phrog_1828	50.9	0.000000000000015	N/A	unknown function
UniRef90	UHGV-1522816_36	UniRef90_UPI001C10F40A	60.8	0.0000000065	replicase	N/A
KOfam	UHGV-1522816_37	K00571	97.7	1.4e-28	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1522816_37	phrog_67	94.8	1.4e-29	DNA methyltransferase	other
UniRef90	UHGV-1522816_37	UniRef90_A0A123SP57	494.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1522816_37	1123315.AUIP01000014_gene1936	494.0	0	DNA modification methylase DNA replication, recombination, and repair	N/A
PADLOC	UHGV-1522816_37	MTase_II_00157	82.6	9.7e-26	Type II methyltransferase	RM
Pfam	UHGV-1522816_37	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1522816_37	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1522816_37	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-1522816_38	K03111	61.2	2.6e-17	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1522816_38	phrog_44	76.7	4.8e-22	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1522816_38	UniRef90_A0A5B0D9I8	141.0	1.56945e-42	Single-stranded DNA-binding protein (Fragment)	N/A
eggNOG-mapper	UHGV-1522816_38	1302863.I872_09030	140.0	1.60995e-41	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1522816_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1522816_38	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1522816_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1522816_38	NF005241,COG0629	N/A	N/A	N/A	N/A