UHGV-1523934 (vOTU-008499)

Viral Genome: UHGV-1523934

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1523934
vOTU ID	vOTU-008499
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0216878
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.9 (High-quality)
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9567
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.68
Jumbo phage	No

Genome content
Genome length (bp)	22,699
GC content	45.08%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	32
CDS density	87%
Average CDS length (bps)	614.44
Total tRNA genes	5
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1523934_1	K14059	203.0	0	int; integrase	N/A
PHROG	UHGV-1523934_1	phrog_1	188.8	0	integrase	integration and excision
UniRef90	UHGV-1523934_1	UniRef90_R5D1I8	422.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1523934_1	1226322.HMPREF1545_00144	188.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1523934_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1523934_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1523934_1	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1523934_4	phrog_13256	80.0	1.5e-23	N/A	unknown function
eggNOG-mapper	UHGV-1523934_4	1160721.RBI_II00522	73.2	1.79e-16	N/A	N/A
PHROG	UHGV-1523934_5	phrog_1009	41.5	0.000000000017	N/A	unknown function
PHROG	UHGV-1523934_6	phrog_372	176.4	0	tail protein	tail
UniRef90	UHGV-1523934_6	UniRef90_UPI001373A0FD	209.0	0	N/A	N/A
eggNOG-mapper	UHGV-1523934_6	556261.HMPREF0240_01282	168.0	5.38939e-42	N/A	N/A
Pfam	UHGV-1523934_6	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-1523934_6	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1523934_6	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1523934_7	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
Pfam	UHGV-1523934_8	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1523934_8	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1523934_9	phrog_23464	230.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1523934_9	665950.HMPREF1025_02660	182.0	1.4013e-45	phage tail tape measure protein	N/A
COG	UHGV-1523934_9	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-1523934_10	phrog_2066	72.1	7.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-1523934_10	702450.CUW_0542	73.6	0.0000000000000231	N/A	N/A
UniRef90	UHGV-1523934_11	UniRef90_UPI0015B841A2	78.6	1.83e-16	N/A	N/A
eggNOG-mapper	UHGV-1523934_11	1294142.CINTURNW_1697	84.3	1.47e-19	N/A	N/A
Pfam	UHGV-1523934_11	PF19591	N/A	N/A	N/A	DUF6096
structural_annotation	UHGV-1523934_11	PF19591,TIGR01674	N/A	N/A	N/A	N/A
PHROG	UHGV-1523934_12	phrog_158	55.1	0.0000000000000015	major tail protein	tail
UniRef90	UHGV-1523934_12	UniRef90_UPI0005906553	114.0	3.27e-30	tail protein	N/A
eggNOG-mapper	UHGV-1523934_12	1499683.CCFF01000017_gene2926	114.0	5.49e-31	Phage tail tube protein, TTP	N/A
Pfam	UHGV-1523934_12	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-1523934_12	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1523934_13	phrog_78	41.6	0.000000000021	tail terminator	connector
structural_annotation	UHGV-1523934_13	PF09646,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-1523934_14	phrog_5	87.9	1.3e-25	tail completion or Neck1 protein	connector
UniRef90	UHGV-1523934_14	UniRef90_A0A136Q8F4	112.0	4.41e-29	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1523934_14	1140001.I571_01837	104.0	7.57e-27	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1523934_14	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1523934_14	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1523934_14	PF05069,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1523934_15	PF12206,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1523934_16	phrog_132	48.5	0.00000000000012	head-tail adaptor	connector
UniRef90	UHGV-1523934_16	UniRef90_UPI00189A4AB6	65.1	0.00000000000981	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1523934_16	1123405.AUMM01000039_gene148	60.1	0.000000000178	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-1523934_16	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1523934_16	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1523934_17	phrog_544	66.4	4.6e-21	major head protein	head and packaging
UniRef90	UHGV-1523934_17	UniRef90_A0A6N3FT63	249.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-1523934_17	642492.Clole_0972	218.0	0	N/A	N/A
structural_annotation	UHGV-1523934_17	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1523934_18	phrog_172	90.1	3.3e-26	head scaffolding protein	head and packaging
UniRef90	UHGV-1523934_18	UniRef90_UPI00131C4E9A	103.0	1.71e-24	N/A	N/A
Pfam	UHGV-1523934_18	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1523934_18	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1523934_19	phrog_6332	65.3	5.6e-19	N/A	unknown function
UniRef90	UHGV-1523934_19	UniRef90_R5EMP4	90.1	3.33e-22	Cys_rich_CPCC domain-containing protein	N/A
eggNOG-mapper	UHGV-1523934_19	633.DJ40_3362	79.7	4.28e-19	Cysteine-rich CPCC	N/A
Pfam	UHGV-1523934_19	PF14206	N/A	N/A	Cysteine-rich CPCC	Cys_rich_CPCC
structural_annotation	UHGV-1523934_19	PF14206	N/A	N/A	N/A	N/A
PHROG	UHGV-1523934_20	phrog_115	186.0	0	minor head protein	head and packaging
UniRef90	UHGV-1523934_20	UniRef90_A0A1T4K6J1	169.0	8.40779e-45	Phage putative head morphogenesis protein, SPP1 gp7 family	N/A
eggNOG-mapper	UHGV-1523934_20	1280689.AUJC01000007_gene3319	127.0	1.25e-29	head morphogenesis protein, SPP1 gp7 family	N/A
Pfam	UHGV-1523934_20	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1523934_20	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1523934_20	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1523934_21	phrog_64	338.2	0	portal protein	head and packaging
UniRef90	UHGV-1523934_21	UniRef90_A0A843HXP9	365.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1523934_21	1123250.KB908417_gene647	238.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1523934_21	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1523934_21	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1523934_21	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1523934_22	K06909	310.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1523934_22	phrog_3717	173.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1523934_22	UniRef90_UPI0018AA0488	448.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1523934_22	702450.CUW_0531	367.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1523934_22	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1523934_22	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1523934_22	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1523934_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1523934_22	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1523934_23	phrog_2538	48.0	0.00000000000019	terminase small subunit	head and packaging
Pfam	UHGV-1523934_23	PF13022	N/A	N/A	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
structural_annotation	UHGV-1523934_23	PF13022	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1523934_25	PF11645,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
Pfam	UHGV-1523934_27	PF18903	N/A	N/A	N/A	DUF5659
KOfam	UHGV-1523934_29	K17950	342.2	0	cuyA; L-cysteate sulfo-lyase [EC:4.4.1.25]	N/A
UniRef90	UHGV-1523934_29	UniRef90_A0A3D5TEW6	595.0	0	D-cysteine desulfhydrase family protein	N/A
eggNOG-mapper	UHGV-1523934_29	1226322.HMPREF1545_03972	322.0	0	Pyridoxal-phosphate dependent enzyme	N/A
Pfam	UHGV-1523934_29	PF00291	N/A	N/A	Pyridoxal-phosphate dependent enzyme	PALP
NCBIFam	UHGV-1523934_29	TIGR01275.1	N/A	N/A	pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family	N/A
COG	UHGV-1523934_29	COG2515	N/A	N/A	1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase, PLP-dependent ACC family	N/A
UniRef90	UHGV-1523934_31	UniRef90_UPI001F44EC47	119.0	1.45e-33	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1523934_31	428125.CLOLEP_02009	98.6	4.89e-26	sequence-specific DNA binding	N/A
COG	UHGV-1523934_31	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1523934_31	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A