UHGV-1524498 (vOTU-036364)

Viral Genome: UHGV-1524498

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1524498
vOTU ID	vOTU-036364
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0193931
Associated BioSample	SAMEA2041931
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.31 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9801
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.09
Jumbo phage	No

Genome content
Genome length (bp)	25,366
GC content	52.04%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	92%
Average CDS length (bps)	533.05
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 65.31)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1524498_1	K19721	189.9	0	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-1524498_1	phrog_819	149.7	0	tail protein	tail
UniRef90	UHGV-1524498_1	UniRef90_A0A8D9PE13	747.0	0	Virion structural protein	N/A
eggNOG-mapper	UHGV-1524498_1	33035.JPJF01000033_gene2261	58.9	0.00000514	tail collar domain protein	N/A
Pfam	UHGV-1524498_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1524498_1	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-1524498_2	phrog_3287	134.0	7.9e-40	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1524498_2	665956.HMPREF1032_03917	480.0	0	N/A	N/A
structural_annotation	UHGV-1524498_2	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-1524498_4	phrog_15239	41.8	0.000000000012	N/A	unknown function
PHROG	UHGV-1524498_5	phrog_1357	242.8	0	major head protein	head and packaging
UniRef90	UHGV-1524498_5	UniRef90_A0A8D9UHB3	601.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1524498_5	696281.Desru_1092	290.0	0	N/A	N/A
NCBIFam	UHGV-1524498_5	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1524498_5	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1524498_6	UniRef90_A0A8D9UHB9	414.0	0	Non-structural protein 5	N/A
UniRef90	UHGV-1524498_7	UniRef90_A0A8D9UHD6	128.0	5.95e-38	Ogr/Delta-like zinc finger	N/A
structural_annotation	UHGV-1524498_7	PF20020	N/A	N/A	N/A	N/A
PHROG	UHGV-1524498_8	phrog_156	171.1	0	portal protein	head and packaging
UniRef90	UHGV-1524498_8	UniRef90_A0A8D9UHD1	1097.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1524498_8	1121091.AUMP01000003_gene2583	365.0	0	N/A	N/A
Pfam	UHGV-1524498_8	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1524498_8	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-1524498_10	K06909	139.5	3.00004e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1524498_10	phrog_979	164.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-1524498_10	UniRef90_A0A8D9UH35	943.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-1524498_10	1232449.BAHV02000016_gene1824	480.0	0	N/A	N/A
Pfam	UHGV-1524498_10	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1524498_10	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1524498_10	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-1524498_11	UniRef90_A0A8D9UHF6	202.0	0	N/A	N/A
eggNOG-mapper	UHGV-1524498_11	272630.MexAM1_META1p3985	56.6	0.00000000407	N/A	N/A
Pfam	UHGV-1524498_11	PF18932	N/A	N/A	N/A	DUF5681
PHROG	UHGV-1524498_12	phrog_7339	101.4	8e-30	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1524498_12	UniRef90_A0A2V2GLL9	531.0	0	Metallophos_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1524498_12	1150474.JQJI01000006_gene784	94.7	2.67e-20	metallophosphoesterase	N/A
Pfam	UHGV-1524498_12	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-1524498_12	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
structural_annotation	UHGV-1524498_12	PF12850,MF_00325,NF003118,COG1311	N/A	N/A	N/A	N/A
PHROG	UHGV-1524498_14	phrog_36	47.5	0.00000000000034	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1524498_14	428125.CLOLEP_01806	76.3	0.00000000000000161	N/A	N/A
Pfam	UHGV-1524498_14	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1524498_14	PF07374,TIGR01636	N/A	N/A	N/A	N/A
UniRef90	UHGV-1524498_15	UniRef90_A0A8D9PDT5	53.9	0.000000705	Hydrogenase/urease nickel incorporation protein	N/A
PHROG	UHGV-1524498_16	phrog_954	201.9	0	DNA methyltransferase	other
UniRef90	UHGV-1524498_16	UniRef90_A0A810Q0N4	325.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1524498_16	1280698.AUJS01000007_gene1028	283.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-1524498_16	MTase_II_00074	200.4	0	Type II methyltransferase	RM
Pfam	UHGV-1524498_16	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-1524498_16	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-1524498_16	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1524498_22	TIGR04381	N/A	N/A	N/A	N/A
KOfam	UHGV-1524498_24	K01160	66.7	6.2e-19	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1524498_24	phrog_34	72.2	8.4e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1524498_24	UniRef90_A0A498CNH4	146.0	2.71852e-43	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1524498_24	477974.Daud_0813	52.8	0.000000947	N/A	N/A
Pfam	UHGV-1524498_24	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
structural_annotation	UHGV-1524498_24	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1524498_25	phrog_9804	164.5	0	N/A	unknown function
UniRef90	UHGV-1524498_25	UniRef90_UPI001E312ACC	362.0	0	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-1524498_25	1121344.JHZO01000003_gene981	179.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1524498_25	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1524498_25	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1524498_26	phrog_9474	95.8	5.1e-28	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1524498_26	UniRef90_UPI001241A3FA	100.0	6.92e-22	phage replication protein	N/A
eggNOG-mapper	UHGV-1524498_26	203119.Cthe_2466	127.0	4.58e-32	N/A	N/A
structural_annotation	UHGV-1524498_26	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-1524498_28	K03111	132.0	6.9e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1524498_28	phrog_44	132.4	3.3e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1524498_28	UniRef90_UPI001E2A5A6F	239.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1524498_28	1235835.C814_01372	123.0	3.74e-34	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1524498_28	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1524498_28	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1524498_28	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1524498_28	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1524498_28	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1524498_29	phrog_7566	51.5	0.000000000000016	N/A	unknown function
eggNOG-mapper	UHGV-1524498_29	693746.OBV_24070	67.0	0.000000000000823	N/A	N/A
PHROG	UHGV-1524498_30	phrog_72	64.9	1.2e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1524498_30	UniRef90_UPI001F3F3E5C	145.0	3.41006e-41	recombination protein NinB	N/A
eggNOG-mapper	UHGV-1524498_30	445972.ANACOL_01825	129.0	1.98e-35	N/A	N/A
structural_annotation	UHGV-1524498_30	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1524498_31	phrog_14970	192.5	0	N/A	unknown function
UniRef90	UHGV-1524498_31	UniRef90_UPI00123F00F5	178.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-1524498_31	428127.EUBDOL_01248	154.0	1.68156e-44	double-strand break repair protein	N/A
Pfam	UHGV-1524498_31	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-1524498_31	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1524498_31	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1524498_33	phrog_4433	190.2	0	N/A	unknown function
UniRef90	UHGV-1524498_33	UniRef90_A0A3S4IYA1	113.0	2.83e-27	Gp53	N/A
eggNOG-mapper	UHGV-1524498_33	767434.Fraau_1460	108.0	5.83e-26	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1524498_33	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1524498_36	NF041588	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1524498_37	PF12728,NF040990	N/A	N/A	N/A	N/A
UniRef90	UHGV-1524498_38	UniRef90_UPI001956DCC9	89.4	3.47e-22	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-1524498_38	PF10078,NF040507,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1524498_39	phrog_8	46.6	0.00000000000081	transcriptional regulator	transcription regulation
UniRef90	UHGV-1524498_39	UniRef90_A0A417HNT1	99.4	1.79e-24	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1524498_39	1378168.N510_01712	74.3	0.0000000000000132	N/A	N/A
Pfam	UHGV-1524498_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1524498_39	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1524498_40	UniRef90_UPI001E2EC555	213.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1524498_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1524498_40	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1524498_44	K14059	204.4	0	int; integrase	N/A
PHROG	UHGV-1524498_44	phrog_1	184.2	0	integrase	integration and excision
UniRef90	UHGV-1524498_44	UniRef90_A0A8D9PE11	351.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1524498_44	693746.OBV_01970	155.0	4.65007e-41	Phage integrase family	N/A
Pfam	UHGV-1524498_44	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1524498_44	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1524498_44	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A