UHGV-1524555 (vOTU-078986)

Viral Genome: UHGV-1524555

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1524555
vOTU ID	vOTU-078986
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0284086
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.98 (High-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9701
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.62
Jumbo phage	No

Genome content
Genome length (bp)	39,582
GC content	27.66%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	73
CDS density	88%
Average CDS length (bps)	476.59
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.98)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1524555_1	K14059	213.1	0	int; integrase	N/A
PHROG	UHGV-1524555_1	phrog_1	193.5	0	integrase	integration and excision
UniRef90	UHGV-1524555_1	UniRef90_UPI0015C5C81A	210.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1524555_1	1298920.KI911353_gene4877	144.0	8.64e-37	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1524555_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1524555_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1524555_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1524555_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1524555_2	phrog_87	61.4	1.3e-17	metallo-protease	other
UniRef90	UHGV-1524555_2	UniRef90_R5PN39	149.0	1.09301e-43	N/A	N/A
eggNOG-mapper	UHGV-1524555_2	515635.Dtur_1293	76.3	8.44e-16	Zn peptidase	N/A
Pfam	UHGV-1524555_2	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1524555_2	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1524555_2	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-1524555_3	K22300	54.9	0.0000000000000014	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1524555_3	phrog_8	74.0	3e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-1524555_3	UniRef90_A0A3D1PLJ6	122.0	1.43e-33	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1524555_3	1391647.AVSV01000039_gene1077	65.5	0.00000000000417	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1524555_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1524555_3	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1524555_3	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1524555_4	UniRef90_A0A3D1PJT4	117.0	5.15e-33	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1524555_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1524555_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1524555_4	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1524555_5	PF09035,NF040990,COG3311	N/A	N/A	N/A	N/A
Pfam	UHGV-1524555_7	PF20097	N/A	N/A	N/A	DUF6487
UniRef90	UHGV-1524555_11	UniRef90_A0A858BRQ4	220.0	0	N/A	N/A
eggNOG-mapper	UHGV-1524555_11	33035.JPJF01000135_gene5082	174.0	0	N/A	N/A
Pfam	UHGV-1524555_11	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-1524555_11	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-1524555_12	UniRef90_B0PAM4	117.0	7.07e-30	YqaJ domain-containing protein	N/A
structural_annotation	UHGV-1524555_12	PF12684,MF_03030,TIGR04328,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-1524555_13	phrog_72	64.7	7.9e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1524555_13	UniRef90_A0A8D9PDS2	105.0	3.44e-25	NinB protein	N/A
eggNOG-mapper	UHGV-1524555_13	445972.ANACOL_01825	99.4	9.27e-24	N/A	N/A
structural_annotation	UHGV-1524555_13	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1524555_15	phrog_8489	250.3	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1524555_15	UniRef90_UPI001D0B3316	227.0	0	replisome organizer	N/A
eggNOG-mapper	UHGV-1524555_15	1139219.I569_00860	199.0	0	DnaD domain protein	N/A
COG	UHGV-1524555_15	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1524555_15	PF09681,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-1524555_16	phrog_2289	49.2	0.000000000000091	helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1524555_16	UniRef90_A0A315ZV02	54.7	0.000000149	Loader and inhibitor of G40P protein	N/A
structural_annotation	UHGV-1524555_16	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1524555_17	phrog_4973	52.5	0.0000000000000082	N/A	unknown function
UniRef90	UHGV-1524555_17	UniRef90_A0A843HM15	66.2	0.00000000000108	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1524555_17	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1524555_17	PF14090,NF008549,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-1524555_18	phrog_34	48.9	0.00000000000014	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1524555_18	UniRef90_A0A151B7Z2	118.0	4.79e-32	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1524555_18	525919.Apre_0813	103.0	9.63e-27	Endodeoxyribonuclease RusA	N/A
COG	UHGV-1524555_18	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1524555_18	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1524555_21	PF09871,TIGR00739,COG4014	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1524555_22	PF20763	N/A	N/A	N/A	N/A
PHROG	UHGV-1524555_26	phrog_478	133.9	5.9e-40	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1524555_26	UniRef90_A0A285PT53	134.0	3.62e-38	Prokaryotic membrane lipoprotein lipid attachment site profile	N/A
eggNOG-mapper	UHGV-1524555_26	397290.C810_00409	134.0	5.9e-39	N/A	N/A
PHROG	UHGV-1524555_27	phrog_36	58.5	1.4e-16	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1524555_27	1121871.AUAT01000030_gene1019	53.1	0.000000808	N/A	N/A
COG	UHGV-1524555_27	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1524555_27	PF07374,NF008895	N/A	N/A	N/A	N/A
PHROG	UHGV-1524555_30	phrog_1233	48.7	0.00000000000013	N/A	unknown function
structural_annotation	UHGV-1524555_30	PF13058	N/A	N/A	N/A	N/A
KOfam	UHGV-1524555_32	K07474	87.5	3.3e-25	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1524555_32	phrog_51	109.2	3.3e-32	terminase small subunit	head and packaging
UniRef90	UHGV-1524555_32	UniRef90_R6HDV5	246.0	0	Prophage LambdaCh01 terminase small subunit	N/A
eggNOG-mapper	UHGV-1524555_32	246194.CHY_1681	140.0	9.32999e-41	terminase, small subunit	N/A
Pfam	UHGV-1524555_32	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1524555_32	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1524555_32	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1524555_33	K06909	160.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1524555_33	phrog_3717	142.8	2.29953e-42	terminase large subunit	head and packaging
UniRef90	UHGV-1524555_33	UniRef90_R6H5U4	318.0	0	Phage terminase large subunit PBSX family	N/A
eggNOG-mapper	UHGV-1524555_33	526218.Sterm_1426	234.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1524555_33	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1524555_33	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1524555_33	PF04466,MF_04145,NF002340,COG5410	N/A	N/A	N/A	N/A
KOfam	UHGV-1524555_34	K06909	223.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1524555_34	phrog_5653	201.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1524555_34	UniRef90_R6HF73	439.0	0	Phage terminase large subunit PBSX family	N/A
eggNOG-mapper	UHGV-1524555_34	1408823.AXUS01000024_gene2712	356.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1524555_34	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
COG	UHGV-1524555_34	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1524555_34	PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1524555_35	phrog_64	227.1	0	portal protein	head and packaging
UniRef90	UHGV-1524555_35	UniRef90_R7IUE9	893.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-1524555_35	665956.HMPREF1032_03614	249.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1524555_35	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1524555_35	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1524555_36	phrog_4502	99.9	3.3e-29	N/A	unknown function
eggNOG-mapper	UHGV-1524555_36	268407.PWYN_12400	107.0	2.29e-29	N/A	N/A
structural_annotation	UHGV-1524555_36	PF14083	N/A	N/A	N/A	N/A
UniRef90	UHGV-1524555_37	UniRef90_R7IWF4	407.0	0	SPP1 gp7 family phage putative head morphogenesis protein	N/A
eggNOG-mapper	UHGV-1524555_37	665956.HMPREF1032_03615	63.2	0.0000000335	cell adhesion	N/A
COG	UHGV-1524555_37	COG2369	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-1524555_39	cluster_73853	37.4	0.000000106	NA	N/A
PHROG	UHGV-1524555_40	phrog_172	84.3	2e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-1524555_40	UniRef90_UPI000C088606	75.5	0.00000000000023	N/A	N/A
eggNOG-mapper	UHGV-1524555_40	1499683.CCFF01000014_gene3909	66.2	0.000000000109	N/A	N/A
Pfam	UHGV-1524555_40	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1524555_40	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1524555_41	phrog_247	282.1	0	major head protein	head and packaging
UniRef90	UHGV-1524555_41	UniRef90_R7ITV5	716.0	0	Putative prophage Lp2 protein 40	N/A
eggNOG-mapper	UHGV-1524555_41	445335.CBN_1379	305.0	0	N/A	N/A
COG	UHGV-1524555_41	COG1106	N/A	N/A	ATPase/GTPase, AAA15 family	N/A
structural_annotation	UHGV-1524555_41	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1524555_42	PF05135,TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1524555_43	445972.ANACOL_01848	58.9	0.00000000138	N/A	N/A
structural_annotation	UHGV-1524555_43	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1524555_44	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1524555_45	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1524555_46	445972.ANACOL_01851	86.7	1.57e-19	N/A	N/A
structural_annotation	UHGV-1524555_46	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1524555_47	PF12363	N/A	N/A	N/A	N/A
PHROG	UHGV-1524555_48	phrog_26308	73.4	3.1e-21	N/A	unknown function
UniRef90	UHGV-1524555_48	UniRef90_A0A1Q6JN93	113.0	1.7e-27	zinc_ribbon_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1524555_48	1042156.CXIVA_15870	101.0	9.02e-23	sh3 domain protein	N/A
COG	UHGV-1524555_48	COG3103	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1524555_48	PF11355,PF13828,MF_00791,TIGR02588,COG5633	N/A	N/A	N/A	N/A
PHROG	UHGV-1524555_52	phrog_1726	136.1	3.09999e-40	anti-repressor	transcription regulation
UniRef90	UHGV-1524555_52	UniRef90_A0A7V6YVA8	218.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1524555_52	1449126.JQKL01000006_gene832	188.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1524555_52	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1524555_52	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1524555_52	PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-1524555_53	phrog_1535	125.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1524555_53	1232449.BAHV02000010_gene2723	87.0	0.0000000000000238	domain protein	N/A
COG	UHGV-1524555_53	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1524555_53	PF09486,NF038178,COG1382	N/A	N/A	N/A	N/A
PHROG	UHGV-1524555_54	phrog_1194	67.7	1.5e-19	N/A	unknown function
structural_annotation	UHGV-1524555_54	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1524555_55	phrog_13879	83.2	3.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-1524555_55	1122919.KB905559_gene1344	73.6	0.0000000000745	N/A	N/A
structural_annotation	UHGV-1524555_55	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1524555_58	509191.AEDB02000102_gene3725	63.9	0.0000000135	RHS repeat-associated core domain	N/A
Pfam	UHGV-1524555_58	PF07591	N/A	N/A	Pretoxin HINT domain	PT-HINT
NCBIFam	UHGV-1524555_58	TIGR01445.1	N/A	N/A	intein N-terminal splicing region	N/A
COG	UHGV-1524555_58	COG1372	N/A	N/A	Intein/homing endonuclease	N/A
eggNOG-mapper	UHGV-1524555_61	742733.HMPREF9469_01801	58.2	0.00000107	N/A	N/A
PHROG	UHGV-1524555_63	phrog_2310	49.1	0.000000000000051	N/A	unknown function
eggNOG-mapper	UHGV-1524555_63	632245.CLP_2682	48.9	0.000000548	N/A	N/A
structural_annotation	UHGV-1524555_65	PF16938	N/A	N/A	N/A	N/A
KOfam	UHGV-1524555_66	K08640	70.4	4.5e-22	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1524555_66	phrog_2649	74.3	9.2e-24	endolysin	lysis
UniRef90	UHGV-1524555_66	UniRef90_B1C9L9	141.0	1.46e-38	Putative peptidoglycan binding domain protein	N/A
eggNOG-mapper	UHGV-1524555_66	445971.ANASTE_02319	141.0	2.46e-39	Peptidase M15	N/A
Pfam	UHGV-1524555_66	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
Pfam	UHGV-1524555_66	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1524555_66	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1524555_66	PF05951,PF01471,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-1524555_67	phrog_2329	61.4	7.4e-18	N/A	unknown function
KOfam	UHGV-1524555_69	K07063	87.1	2.5e-25	N/A	N/A
UniRef90	UHGV-1524555_69	UniRef90_A0A3D1PJK3	100.0	3.27e-24	Putative toxin-antitoxin system toxin component, PIN family	N/A
eggNOG-mapper	UHGV-1524555_69	635013.TherJR_0915	66.2	0.0000000000143	PIN domain	N/A
Pfam	UHGV-1524555_69	PF13470	N/A	N/A	PIN domain	PIN_3
NCBIFam	UHGV-1524555_69	TIGR00305.1	N/A	N/A	putative toxin-antitoxin system toxin component, PIN family	N/A
COG	UHGV-1524555_69	COG1569	N/A	N/A	Predicted nucleic acid-binding protein, contains PIN domain	N/A
structural_annotation	UHGV-1524555_69	PF13470,MF_00265,TIGR00305,COG1569	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1524555_70	PF02583,COG1937	N/A	N/A	N/A	N/A
UniRef90	UHGV-1524555_71	UniRef90_A0A1D8MRT7	49.7	0.00000193	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1524555_71	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1524555_71	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1524555_71	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1524555_72	K19449	62.5	7.9e-18	sinR; XRE family transcriptional regulator, master regulator for biofilm formation	N/A
PHROG	UHGV-1524555_72	phrog_8	47.9	0.00000000000029	transcriptional regulator	transcription regulation
UniRef90	UHGV-1524555_72	UniRef90_R5YVI1	133.0	2.02e-38	HTH-type transcriptional regulator SinR	N/A
eggNOG-mapper	UHGV-1524555_72	1034347.CAHJ01000062_gene1015	61.2	0.000000000167	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-1524555_72	retron_type_VI_hth_cluster2_1	50.6	0.00000000000005	N/A	Retron
Pfam	UHGV-1524555_72	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1524555_72	PF09388	N/A	N/A	Spo0E like sporulation regulatory protein	SpoOE-like
COG	UHGV-1524555_72	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1524555_72	PF13443,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A