UHGV-1524742 (vOTU-013924)

Viral Genome: UHGV-1524742

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1524742
vOTU ID	vOTU-013924
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0254569
Associated BioSample	SAMEA2338704
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.82 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9781
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.48
Jumbo phage	No

Genome content
Genome length (bp)	34,064
GC content	60.51%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	91%
Average CDS length (bps)	618.96
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.82)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1524742_1	K14059	186.0	0	int; integrase	N/A
PHROG	UHGV-1524742_1	phrog_1	173.2	0	integrase	integration and excision
UniRef90	UHGV-1524742_1	UniRef90_UPI0013EF4EFD	349.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1524742_1	1226322.HMPREF1545_00144	325.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1524742_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1524742_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1524742_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1524742_1	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1524742_2	1262449.CP6013_2082	154.0	0	N/A	N/A
structural_annotation	UHGV-1524742_2	PF11631,TIGR03066	N/A	N/A	N/A	N/A
KOfam	UHGV-1524742_3	K23779	42.4	0.000000000013	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
Pfam	UHGV-1524742_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1524742_3	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1524742_3	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1524742_5	UniRef90_A0A1Y3ZTC9	112.0	3.29e-30	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1524742_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1524742_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1524742_5	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1524742_6	PF13601,TIGR04176	N/A	N/A	N/A	N/A
KOfam	UHGV-1524742_7	K22300	52.7	0.0000000000000087	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1524742_7	phrog_8	42.6	0.0000000000086	transcriptional regulator	transcription regulation
UniRef90	UHGV-1524742_7	UniRef90_UPI000F0D19B9	59.7	0.000000000212	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1524742_7	1280680.AUJU01000017_gene3835	53.5	0.000000147	Helix-turn-helix domain	N/A
Pfam	UHGV-1524742_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1524742_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1524742_7	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1524742_8	phrog_6499	112.6	1.9e-33	transcriptional regulator	transcription regulation
UniRef90	UHGV-1524742_8	UniRef90_G9YL68	136.0	3.34e-38	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1524742_8	742738.HMPREF9460_00847	136.0	3.93e-39	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1524742_8	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1524742_8	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-1524742_8	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1524742_11	phrog_270	112.4	5.6e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1524742_11	UniRef90_UPI001F3D92C2	184.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1524742_11	742738.HMPREF9460_00851	165.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-1524742_11	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-1524742_11	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1524742_11	PF04182,NF040939,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-1524742_12	K02314	250.6	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1524742_12	phrog_19	219.0	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1524742_12	UniRef90_UPI00195856D7	391.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1524742_12	1226322.HMPREF1545_00095	265.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-1524742_12	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1524742_12	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1524742_12	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1524742_12	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-1524742_13	K03496	158.5	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1524742_13	phrog_164	120.6	1.4e-35	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1524742_13	UniRef90_UPI000318E277	251.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-1524742_13	1007096.BAGW01000033_gene1614	251.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-1524742_13	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1524742_13	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1524742_13	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-1524742_14	K03497	86.2	7e-25	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1524742_14	phrog_27290	313.3	0	N/A	unknown function
UniRef90	UHGV-1524742_14	UniRef90_UPI001C029D7C	271.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1524742_14	1007096.BAGW01000033_gene1613	254.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-1524742_14	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1524742_14	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
PHROG	UHGV-1524742_18	phrog_38832	66.2	3.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-1524742_18	665956.HMPREF1032_00143	68.6	0.00000000000428	N/A	N/A
PHROG	UHGV-1524742_22	phrog_3584	83.6	1.7e-24	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1524742_22	693746.OBV_19950	233.0	0	N/A	N/A
structural_annotation	UHGV-1524742_22	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-1524742_23	phrog_119	71.1	1.4e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1524742_23	UniRef90_G9YSB5	143.0	5.34035e-42	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-1524742_23	926561.KB900623_gene763	85.1	6.99e-20	HNH nucleases	N/A
Pfam	UHGV-1524742_23	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1524742_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1524742_24	phrog_5110	60.4	2.5e-17	terminase small subunit	head and packaging
UniRef90	UHGV-1524742_24	UniRef90_UPI00195E8788	116.0	1.53e-31	P27 family phage terminase small subunit	N/A
Pfam	UHGV-1524742_24	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1524742_24	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1524742_25	phrog_9	246.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1524742_25	UniRef90_A0A6I7GGF0	929.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1524742_25	1235792.C808_00083	605.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-1524742_25	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1524742_25	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1524742_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1524742_25	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1524742_26	phrog_12	115.1	8.4e-35	portal protein	head and packaging
UniRef90	UHGV-1524742_26	UniRef90_G9YSB8	503.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-1524742_26	349161.Dred_2606	307.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1524742_26	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1524742_26	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1524742_26	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1524742_26	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1524742_27	K01358	125.8	4.6e-37	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1524742_27	phrog_94	238.7	0	head maturation protease	head and packaging
UniRef90	UHGV-1524742_27	UniRef90_A0A1Y4BT12	335.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1524742_27	349161.Dred_2605	282.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1524742_27	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1524742_27	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1524742_27	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1524742_28	phrog_10	153.9	1.4013e-45	major head protein	head and packaging
UniRef90	UHGV-1524742_28	UniRef90_G9YSC0	709.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1524742_28	1235792.C808_00086	436.0	0	Phage capsid family	N/A
Pfam	UHGV-1524742_28	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1524742_28	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-1524742_28	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1524742_28	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1524742_28	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1524742_29	phrog_749	64.6	1.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-1524742_29	349161.Dred_2603	82.4	3.11e-19	N/A	N/A
PHROG	UHGV-1524742_30	phrog_19734	118.5	3.7e-35	N/A	unknown function
UniRef90	UHGV-1524742_30	UniRef90_A0A6I7GNS7	125.0	1.17e-34	Phage head closure protein	N/A
eggNOG-mapper	UHGV-1524742_30	349161.Dred_2602	89.7	1.82e-21	N/A	N/A
structural_annotation	UHGV-1524742_30	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1524742_31	999413.HMPREF1094_02005	84.3	1.38e-19	N/A	N/A
structural_annotation	UHGV-1524742_31	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1524742_32	phrog_5	41.9	0.000000000021	tail completion or Neck1 protein	connector
UniRef90	UHGV-1524742_32	UniRef90_A0A1C6FG30	134.0	2.97e-37	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1524742_32	908340.HMPREF9406_2573	133.0	1.19e-37	N/A	N/A
structural_annotation	UHGV-1524742_32	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1524742_33	phrog_88	91.3	1.1e-26	major tail protein	tail
UniRef90	UHGV-1524742_33	UniRef90_G9YSC5	130.0	1.44e-34	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1524742_33	33035.JPJF01000039_gene278	65.9	0.00000000015	N/A	N/A
NCBIFam	UHGV-1524742_33	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1524742_33	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1524742_36	phrog_6900	247.4	0	tail length tape measure protein	tail
UniRef90	UHGV-1524742_36	UniRef90_A0A7X8M4B4	283.0	0	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-1524742_36	1216932.CM240_0625	328.0	0	tape measure	N/A
COG	UHGV-1524742_36	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1524742_36	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1524742_37	phrog_33	83.5	4.1e-24	distal tail protein Dit	tail
UniRef90	UHGV-1524742_37	UniRef90_A0A173Z1X4	168.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1524742_37	1154860.SAG0136_08140	97.4	9.33e-22	phage tail	N/A
COG	UHGV-1524742_37	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1524742_37	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1524742_38	phrog_1067	323.5	0	minor head protein	head and packaging
UniRef90	UHGV-1524742_38	UniRef90_A0A316NPB5	490.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1524742_38	1123263.AUKY01000068_gene489	346.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1524742_38	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1524742_38	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1524742_38	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1524742_38	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
NCBIFam	UHGV-1524742_39	TIGR02543.1	N/A	N/A	TIGR02543 family repeat protein	N/A
structural_annotation	UHGV-1524742_40	PF21683	N/A	N/A	N/A	N/A
PHROG	UHGV-1524742_41	phrog_5302	238.2	0	tail protein	tail
eggNOG-mapper	UHGV-1524742_41	411468.CLOSCI_01504	322.0	0	N/A	N/A
PHROG	UHGV-1524742_42	phrog_20201	45.8	0.0000000000012	N/A	unknown function
UniRef90	UHGV-1524742_43	UniRef90_A0A417QX67	73.2	6.98e-16	XkdX family protein	N/A
structural_annotation	UHGV-1524742_43	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-1524742_44	phrog_199	80.2	2.3e-23	holin	lysis
UniRef90	UHGV-1524742_44	UniRef90_R6DA24	172.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-1524742_44	1160721.RBI_I01565	117.0	1.86e-31	Bacteriophage holin family	N/A
Pfam	UHGV-1524742_44	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1524742_44	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1524742_44	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1524742_44	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1524742_45	K01447	89.7	4.6e-26	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1524742_45	phrog_1493	163.4	0	endolysin	lysis
UniRef90	UHGV-1524742_45	UniRef90_A0A350TLR9	299.0	0	Peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1524742_45	553973.CLOHYLEM_04450	229.0	0	Ami_2	N/A
Pfam	UHGV-1524742_45	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1524742_45	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1524742_45	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1524742_45	PF01510,PF01471,MF_04111,NF008758,COG3023	N/A	N/A	N/A	N/A
UniRef90	UHGV-1524742_49	UniRef90_R6DRH1	101.0	6.74e-24	Putative TnpX site-specific recombinase	N/A
eggNOG-mapper	UHGV-1524742_49	742738.HMPREF9460_00886	117.0	2.84e-31	N/A	N/A
structural_annotation	UHGV-1524742_49	TIGR03826	N/A	N/A	N/A	N/A
PHROG	UHGV-1524742_50	phrog_25567	57.3	1.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-1524742_50	1235798.C817_04600	94.4	3.49e-23	N/A	N/A
Pfam	UHGV-1524742_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3