UHGV-1525504 (vOTU-161649)

Viral Genome: UHGV-1525504

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1525504
vOTU ID	vOTU-161649
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0260423
Associated BioSample	SAMEA3664742
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.74 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9764
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.06
Jumbo phage	No

Genome content
Genome length (bp)	35,866
GC content	32.62%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	89%
Average CDS length (bps)	504.76
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 79.74)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1525504_1	phrog_33	52.8	0.0000000000000097	distal tail protein Dit	tail
UniRef90	UHGV-1525504_1	UniRef90_A0A1C6JHE5	62.8	0.000000041	Phage-related protein	N/A
Pfam	UHGV-1525504_1	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-1525504_1	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1525504_1	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1525504_1	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1525504_2	phrog_13339	328.2	0	tail length tape measure protein	tail
UniRef90	UHGV-1525504_2	UniRef90_A0A395WD11	1851.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1525504_2	1314.HKU360_01215	249.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-1525504_2	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1525504_2	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1525504_2	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1525504_2	PF10145,TIGR01760,TIGR02971,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1525504_3	phrog_709	44.1	0.0000000000032	N/A	unknown function
structural_annotation	UHGV-1525504_3	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1525504_4	phrog_88	143.4	1.19951e-42	major tail protein	tail
UniRef90	UHGV-1525504_4	UniRef90_A0A395WA58	389.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1525504_4	1033744.CAEL01000029_gene1276	152.0	5.1848e-44	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1525504_4	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1525504_4	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1525504_5	UniRef90_A0A374RUJ8	142.0	7.14999e-41	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1525504_5	86416.Clopa_0344	57.8	0.00000000894	N/A	N/A
structural_annotation	UHGV-1525504_5	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1525504_6	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-1525504_7	phrog_1951	71.9	6.5e-21	head-tail adaptor	connector
UniRef90	UHGV-1525504_7	UniRef90_A0A395WC07	221.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-1525504_7	1243664.CAVL020000054_gene3020	60.1	0.000000000276	head-tail adaptor	N/A
NCBIFam	UHGV-1525504_7	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-1525504_7	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1525504_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1525504_8	phrog_5223	46.9	0.00000000000039	neck protein	connector
UniRef90	UHGV-1525504_8	UniRef90_A0A374RXD1	77.8	1.02e-16	DNA-packaging protein	N/A
structural_annotation	UHGV-1525504_8	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1525504_9	phrog_10	84.7	1.3e-24	major head protein	head and packaging
UniRef90	UHGV-1525504_9	UniRef90_A0A395WF70	793.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1525504_9	1536774.H70357_10630	168.0	8.40779e-45	Phage capsid family	N/A
Pfam	UHGV-1525504_9	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1525504_9	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1525504_9	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1525504_9	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1525504_10	K06904	86.5	4e-25	N/A	N/A
PHROG	UHGV-1525504_10	phrog_80	115.9	5.7e-34	head maturation protease	head and packaging
UniRef90	UHGV-1525504_10	UniRef90_A0A413UET6	347.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1525504_10	411470.RUMGNA_02064	170.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-1525504_10	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1525504_10	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1525504_10	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1525504_10	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1525504_11	phrog_12	109.6	2.2e-32	portal protein	head and packaging
UniRef90	UHGV-1525504_11	UniRef90_A0A395W9X2	820.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1525504_11	1203606.HMPREF1526_01337	289.0	0	Portal protein	N/A
Pfam	UHGV-1525504_11	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1525504_11	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1525504_11	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1525504_12	phrog_9	308.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1525504_12	UniRef90_A0A395WD03	1124.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1525504_12	742740.HMPREF9474_04307	549.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-1525504_12	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1525504_12	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1525504_12	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1525504_12	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1525504_13	phrog_361	74.5	1.3e-21	terminase small subunit	head and packaging
UniRef90	UHGV-1525504_13	UniRef90_A0A1C6H6I9	80.1	6.43e-17	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1525504_13	1329516.JPST01000017_gene431	50.1	0.00000474	Phage terminase, small subunit	N/A
Pfam	UHGV-1525504_13	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-1525504_13	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1525504_13	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1525504_14	phrog_119	59.0	8e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1525504_14	UniRef90_A0A395WA48	265.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1525504_14	1211814.CAPG01000074_gene3460	66.2	0.00000000000191	HNH endonuclease	N/A
Pfam	UHGV-1525504_14	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1525504_14	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-1525504_16	502558.EGYY_11910	62.8	0.0000000000815	N/A	N/A
eggNOG-mapper	UHGV-1525504_19	1403948.Q618_VCMC00003G0140	100.0	4.09e-24	N/A	N/A
PHROG	UHGV-1525504_23	phrog_2316	41.6	0.000000000021	N/A	unknown function
UniRef90	UHGV-1525504_23	UniRef90_A0A3E4YBW5	116.0	3.34e-32	N/A	N/A
eggNOG-mapper	UHGV-1525504_23	1007103.AFHW01000207_gene1752	56.6	0.00000000178	N/A	N/A
structural_annotation	UHGV-1525504_23	PF16475,MF_00436,NF033216	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1525504_24	PF10879	N/A	N/A	N/A	N/A
UniRef90	UHGV-1525504_26	UniRef90_A0A413UEX6	289.0	0	N/A	N/A
Pfam	UHGV-1525504_26	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1525504_26	PF07374,NF008895	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1525504_30	PF11061	N/A	N/A	N/A	N/A
PHROG	UHGV-1525504_34	phrog_15198	41.4	0.0000000000083	N/A	unknown function
UniRef90	UHGV-1525504_34	UniRef90_A0A395WBY6	159.0	0	N/A	N/A
structural_annotation	UHGV-1525504_36	PF16789	N/A	N/A	N/A	N/A
PHROG	UHGV-1525504_37	phrog_2118	122.2	4.5e-36	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1525504_37	UniRef90_A0A374RH39	196.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1525504_37	742740.HMPREF9474_03129	126.0	6.94e-36	HNH endonuclease	N/A
Pfam	UHGV-1525504_37	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1525504_37	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1525504_37	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1525504_38	phrog_2715	120.5	1e-35	N/A	unknown function
UniRef90	UHGV-1525504_38	UniRef90_A0A1B8RSY6	102.0	5.88e-25	N/A	N/A
eggNOG-mapper	UHGV-1525504_38	642492.Clole_0950	129.0	2.01e-36	N/A	N/A
structural_annotation	UHGV-1525504_38	PF18406	N/A	N/A	N/A	N/A
PHROG	UHGV-1525504_40	phrog_24490	46.2	0.00000000000063	N/A	unknown function
eggNOG-mapper	UHGV-1525504_40	861454.HMPREF9099_00537	51.6	0.000000213	N/A	N/A
PHROG	UHGV-1525504_42	phrog_4601	41.4	0.000000000011	N/A	unknown function
PHROG	UHGV-1525504_43	phrog_173	90.0	3.2e-26	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1525504_43	UniRef90_UPI001D0A0924	262.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-1525504_43	1423321.AS29_16210	69.3	0.00000000000149	dUTPase	N/A
Pfam	UHGV-1525504_43	PF08761	N/A	N/A	dUTPase	dUTPase_2
COG	UHGV-1525504_43	COG4508	N/A	N/A	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	N/A
structural_annotation	UHGV-1525504_43	PF08761,COG4508	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1525504_44	PF11184	N/A	N/A	N/A	N/A
PHROG	UHGV-1525504_45	phrog_774	57.0	2.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-1525504_45	397290.C810_05225	57.8	0.00000000663	N/A	N/A
eggNOG-mapper	UHGV-1525504_46	428127.EUBDOL_01513	152.0	2.8026e-45	N/A	N/A
eggNOG-mapper	UHGV-1525504_47	658655.HMPREF0988_00884	87.0	3.08e-20	N/A	N/A
KOfam	UHGV-1525504_50	K02315	119.8	3.1e-35	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1525504_50	phrog_50	105.4	6.7e-31	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1525504_50	UniRef90_A0A395WER8	525.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-1525504_50	1232446.BAIE02000011_gene1611	132.0	1.7e-34	N/A	N/A
Pfam	UHGV-1525504_50	PF00308	N/A	N/A	Bacterial dnaA protein	Bac_DnaA
COG	UHGV-1525504_50	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1525504_50	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1525504_51	phrog_428	141.8	5.5001e-42	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1525504_51	UniRef90_A0A395WBX6	423.0	0	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1525504_51	1194526.A284_08025	149.0	8.28994e-41	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-1525504_51	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-1525504_51	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-1525504_51	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1525504_51	PF09524,PF08679,MF_01909,TIGR02220,NF040939,COG1675	N/A	N/A	N/A	N/A
KOfam	UHGV-1525504_54	K04763	136.7	2.6e-40	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1525504_54	phrog_1	123.1	2.9e-36	integrase	integration and excision
UniRef90	UHGV-1525504_54	UniRef90_A0A395W9T7	571.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1525504_54	908340.HMPREF9406_2589	228.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1525504_54	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1525504_54	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1525504_54	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1525504_58	K18830	60.3	3e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1525504_58	phrog_8	45.7	0.00000000000083	transcriptional regulator	transcription regulation
UniRef90	UHGV-1525504_58	UniRef90_A0A395WA05	259.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1525504_58	999413.HMPREF1094_02045	96.7	6.1e-24	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1525504_58	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1525504_58	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1525504_58	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1525504_59	phrog_4980	126.6	2e-37	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-1525504_59	658086.HMPREF0994_06731	86.7	2.03e-16	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-1525504_59	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-1525504_59	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1525504_59	PF18933,PF02631,MF_02248,MF_01114,NF008627,NF001062,COG5435,COG2137	N/A	N/A	N/A	N/A
PHROG	UHGV-1525504_61	phrog_5059	184.5	0	N/A	unknown function
UniRef90	UHGV-1525504_61	UniRef90_A0A395WDV4	500.0	0	N/A	N/A
eggNOG-mapper	UHGV-1525504_61	1232446.BAIE02000002_gene792	171.0	0	N/A	N/A
Pfam	UHGV-1525504_61	PF08861	N/A	N/A	N/A	DUF1828
Pfam	UHGV-1525504_61	PF08862	N/A	N/A	N/A	DUF1829
structural_annotation	UHGV-1525504_61	PF08862,PF08861,MF_00722,COG3372	N/A	N/A	N/A	N/A
UniRef90	UHGV-1525504_62	UniRef90_A0A2A2EE23	70.5	0.00000000000141	N/A	N/A
eggNOG-mapper	UHGV-1525504_62	428127.EUBDOL_01263	93.2	3.67e-22	N/A	N/A
KOfam	UHGV-1525504_63	K14059	197.4	0	int; integrase	N/A
PHROG	UHGV-1525504_63	phrog_1	177.4	0	integrase	integration and excision
UniRef90	UHGV-1525504_63	UniRef90_A0A395WBW7	741.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1525504_63	1235796.C815_00955	296.0	0	DNA integration	N/A
Pfam	UHGV-1525504_63	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1525504_63	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1525504_63	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A