UHGV-1525517 (vOTU-010263)

Viral Genome: UHGV-1525517

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1525517
vOTU ID	vOTU-010263
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0347580
Associated BioSample	SAMEA3136664
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9796
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.89
Jumbo phage	No

Genome content
Genome length (bp)	45,365
GC content	36.99%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	79
CDS density	90%
Average CDS length (bps)	515.62
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1525517_1	K14059	161.2	0	int; integrase	N/A
PHROG	UHGV-1525517_1	phrog_1	156.4	0	integrase	integration and excision
UniRef90	UHGV-1525517_1	UniRef90_A0A173TZS3	758.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1525517_1	1235798.C817_05483	403.0	0	Phage integrase family	N/A
Pfam	UHGV-1525517_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1525517_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1525517_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
COG	UHGV-1525517_2	COG4640	N/A	N/A	N/A	N/A
PHROG	UHGV-1525517_3	phrog_87	68.6	7.3e-20	metallo-protease	other
UniRef90	UHGV-1525517_3	UniRef90_A0A417V5H7	287.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1525517_3	1235802.C823_04751	109.0	1.51e-28	IrrE N-terminal-like domain	N/A
Pfam	UHGV-1525517_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1525517_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1525517_3	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1525517_4	phrog_8	58.7	1.5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1525517_4	UniRef90_A0A417V5F8	172.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1525517_4	610130.Closa_1361	104.0	5.37e-27	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1525517_4	PF07022	N/A	N/A	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
COG	UHGV-1525517_4	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1525517_4	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1525517_5	phrog_8	54.1	0.0000000000000041	transcriptional regulator	transcription regulation
UniRef90	UHGV-1525517_5	UniRef90_A0A417V5F3	104.0	3.88e-28	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1525517_5	476272.RUMHYD_02827	77.4	4.36e-18	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1525517_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1525517_5	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1525517_5	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-1525517_8	cluster_17974	97.4	4.33e-30	NA	N/A
PHROG	UHGV-1525517_9	phrog_36464	74.5	1.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-1525517_9	742740.HMPREF9474_03484	64.7	0.000000000000591	N/A	N/A
structural_annotation	UHGV-1525517_9	PF09035	N/A	N/A	N/A	N/A
PHROG	UHGV-1525517_13	phrog_659	44.6	0.0000000000021	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1525517_13	UniRef90_A0A5B3G783	350.0	0	N/A	N/A
eggNOG-mapper	UHGV-1525517_13	33035.JPJF01000135_gene5082	234.0	0	N/A	N/A
Pfam	UHGV-1525517_13	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-1525517_13	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-1525517_14	phrog_72	48.3	0.00000000000011	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1525517_14	UniRef90_A0A285PU94	118.0	2.76e-30	Recombinase NinB	N/A
eggNOG-mapper	UHGV-1525517_14	411490.ANACAC_00804	239.0	0	N/A	N/A
structural_annotation	UHGV-1525517_14	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1525517_15	phrog_7566	95.4	3.4e-28	N/A	unknown function
UniRef90	UHGV-1525517_15	UniRef90_A0A417V5I7	204.0	0	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-1525517_15	1304866.K413DRAFT_1198	83.6	9.09e-20	N/A	N/A
KOfam	UHGV-1525517_16	K01160	48.8	0.00000000000019	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1525517_16	phrog_1682	64.6	1.8e-18	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1525517_16	UniRef90_A0A417V5H0	262.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1525517_16	1158604.I591_01786	103.0	8.79e-27	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1525517_16	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1525517_16	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1525517_16	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1525517_17	phrog_270	79.1	8.3e-23	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1525517_17	742733.HMPREF9469_01845	175.0	0	N/A	N/A
structural_annotation	UHGV-1525517_17	PF10771,MF_01177,TIGR01714,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-1525517_18	phrog_1123	60.5	2.3e-17	N/A	unknown function
UniRef90	UHGV-1525517_18	UniRef90_A0A6N9P096	57.4	0.0000000176	DNA gyrase	N/A
eggNOG-mapper	UHGV-1525517_18	1560313.A0A0D3MSU0_9CAUD	51.6	0.000000527	N/A	N/A
structural_annotation	UHGV-1525517_18	PF03551,MF_01804,TIGR03433,COG1695	N/A	N/A	N/A	N/A
UniRef90	UHGV-1525517_19	UniRef90_UPI001BA881F1	110.0	1.34e-28	transposase	N/A
Pfam	UHGV-1525517_19	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
structural_annotation	UHGV-1525517_19	PF13518,PF13613,NF040595,COG3415	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1525517_21	908337.HMPREF9257_0550	78.6	3.73e-16	N/A	N/A
eggNOG-mapper	UHGV-1525517_27	457412.RSAG_01159	199.0	0	N/A	N/A
structural_annotation	UHGV-1525517_29	PF11950	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1525517_30	PF19079,TIGR04203	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1525517_31	PF14084	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1525517_33	PF14844	N/A	N/A	N/A	N/A
KOfam	UHGV-1525517_35	K22299	66.0	8.2e-19	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1525517_35	phrog_8	64.4	2.4e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1525517_35	UniRef90_A0A173U128	98.2	3.03e-23	Transcriptional regulator, y4mF family	N/A
eggNOG-mapper	UHGV-1525517_35	1235790.C805_00648	67.0	0.00000000000789	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-1525517_35	retron_type_VI_hth_cluster2_1	55.7	0.0000000000000011	N/A	Retron
Pfam	UHGV-1525517_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1525517_35	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1525517_38	PF14285	N/A	N/A	N/A	N/A
KOfam	UHGV-1525517_42	K07727	46.7	0.00000000000081	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-1525517_42	UniRef90_UPI001BA79D8F	147.0	5.60519e-45	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1525517_42	877411.JMMA01000002_gene1483	69.3	0.00000000000000934	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1525517_42	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1525517_42	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1525517_44	phrog_1257	77.1	2.6e-22	ribosome associated inhibitor A; zinc finger domain	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1525517_44	UniRef90_A0A3E4LX24	77.0	8.67e-16	XRE family transcriptional regulator	N/A
PHROG	UHGV-1525517_46	phrog_606	87.8	1.3e-25	terminase small subunit	head and packaging
UniRef90	UHGV-1525517_46	UniRef90_UPI0004BAB6EB	143.0	3.05007e-41	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1525517_46	397290.C810_05185	155.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-1525517_46	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1525517_46	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1525517_47	K06909	333.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1525517_47	phrog_3717	164.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1525517_47	UniRef90_UPI00156DBE69	823.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1525517_47	33035.JPJF01000106_gene3136	393.0	0	Terminase small subunit	N/A
Pfam	UHGV-1525517_47	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1525517_47	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1525517_47	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1525517_47	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1525517_47	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1525517_48	phrog_533	262.3	0	portal protein	head and packaging
UniRef90	UHGV-1525517_48	UniRef90_A0A173TY48	887.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1525517_48	33035.JPJF01000106_gene3135	451.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-1525517_48	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1525517_50	phrog_581	256.5	0	minor head protein	head and packaging
UniRef90	UHGV-1525517_50	UniRef90_A0A173TY40	747.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1525517_50	33035.JPJF01000106_gene3134	405.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1525517_50	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1525517_50	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1525517_50	PF06152	N/A	N/A	N/A	N/A
UniRef90	UHGV-1525517_51	UniRef90_A0A417UWY7	202.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-1525517_51	476272.RUMHYD_01766	59.3	0.000000000533	N/A	N/A
PHROG	UHGV-1525517_52	phrog_1048	47.8	0.00000000000035	N/A	unknown function
eggNOG-mapper	UHGV-1525517_52	457412.RSAG_01107	92.4	4.19e-22	N/A	N/A
PHROG	UHGV-1525517_53	phrog_419	103.4	2.6e-30	N/A	unknown function
eggNOG-mapper	UHGV-1525517_53	1211643.K4K2V0_9CAUD	91.3	5.36e-23	N/A	N/A
structural_annotation	UHGV-1525517_53	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-1525517_54	phrog_21718	84.6	1.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-1525517_54	1235790.C805_00058	102.0	2.05e-25	N/A	N/A
eggNOG-mapper	UHGV-1525517_56	476272.RUMHYD_01770	74.7	0.000000000000174	N/A	N/A
PHROG	UHGV-1525517_57	phrog_20016	61.9	8.6e-18	N/A	unknown function
UniRef90	UHGV-1525517_57	UniRef90_A0A316MV88	183.0	0	BclA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1525517_57	1226322.HMPREF1545_00077	53.5	0.000000535	N/A	N/A
structural_annotation	UHGV-1525517_57	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1525517_58	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
PHROG	UHGV-1525517_60	phrog_194	42.0	0.000000000012	head scaffolding protein	head and packaging
UniRef90	UHGV-1525517_60	UniRef90_UPI001C0EBA51	155.0	5.74532e-44	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1525517_60	742765.HMPREF9457_02126	73.6	0.000000000000173	COG NOG36366 non supervised orthologous group	N/A
PHROG	UHGV-1525517_61	phrog_247	228.6	0	major head protein	head and packaging
UniRef90	UHGV-1525517_61	UniRef90_UPI001BA5448B	292.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-1525517_61	33035.JPJF01000106_gene3132	540.0	0	N/A	N/A
structural_annotation	UHGV-1525517_61	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1525517_62	phrog_541	89.5	2.9e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-1525517_62	1235790.C805_00076	169.0	0	N/A	N/A
PHROG	UHGV-1525517_63	phrog_1233	93.9	1.8e-27	N/A	unknown function
UniRef90	UHGV-1525517_63	UniRef90_UPI001C39EFB9	103.0	1.74e-26	Dienelactone hydrolase family protein	N/A
eggNOG-mapper	UHGV-1525517_63	33035.JPJF01000106_gene3130	124.0	3.39e-35	N/A	N/A
PHROG	UHGV-1525517_64	phrog_3366	84.8	1e-24	N/A	unknown function
eggNOG-mapper	UHGV-1525517_64	476272.RUMHYD_01779	120.0	1.11e-32	N/A	N/A
structural_annotation	UHGV-1525517_64	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1525517_65	phrog_556	65.0	8.2e-19	minor head protein	head and packaging
UniRef90	UHGV-1525517_65	UniRef90_UPI000E4989EB	162.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1525517_65	476272.RUMHYD_01780	173.0	0	N/A	N/A
Pfam	UHGV-1525517_65	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1525517_65	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1525517_66	phrog_3266	81.6	8.3e-24	tail completion	connector
eggNOG-mapper	UHGV-1525517_66	476272.RUMHYD_01781	187.0	0	N/A	N/A
structural_annotation	UHGV-1525517_66	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1525517_67	phrog_3099	124.9	5e-37	N/A	unknown function
eggNOG-mapper	UHGV-1525517_67	411902.CLOBOL_00129	159.0	0	N/A	N/A
structural_annotation	UHGV-1525517_67	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1525517_68	phrog_11299	70.9	1.9e-20	N/A	unknown function
eggNOG-mapper	UHGV-1525517_68	411459.RUMOBE_01382	74.7	0.00000000000000308	N/A	N/A
structural_annotation	UHGV-1525517_68	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1525517_69	phrog_706	136.6	1.50001e-40	N/A	unknown function
UniRef90	UHGV-1525517_69	UniRef90_A0A173TZF2	383.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1525517_69	411459.RUMOBE_01383	203.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1525517_69	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1525517_69	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1525517_70	phrog_1535	274.2	0	tail length tape measure protein	tail
UniRef90	UHGV-1525517_70	UniRef90_A0A173TXH9	1411.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1525517_70	411459.RUMOBE_01384	250.0	0	phage tail tape measure protein	N/A
COG	UHGV-1525517_70	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1525517_70	PF11172	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1525517_71	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1525517_72	phrog_6616	601.7	0	tail protein	tail
UniRef90	UHGV-1525517_72	UniRef90_A0A173TV73	1340.0	0	Collagen triple helix repeat (20 copies)	N/A
eggNOG-mapper	UHGV-1525517_72	33035.JPJF01000043_gene1002	286.0	0	N/A	N/A
structural_annotation	UHGV-1525517_72	PF05113,PF18432,NF033848,NF011735,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1525517_73	phrog_18444	94.6	5.1e-28	N/A	unknown function
UniRef90	UHGV-1525517_73	UniRef90_A0A4U9RQD7	53.5	0.0000000696	Peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-1525517_74	1123075.AUDP01000020_gene1530	60.1	0.0000000422	Transposase	N/A
COG	UHGV-1525517_74	COG4372	N/A	N/A	N/A	N/A
PHROG	UHGV-1525517_76	phrog_26878	65.1	2.9e-19	virion structural protein	head and packaging
UniRef90	UHGV-1525517_76	UniRef90_UPI00085CAFDC	75.1	0.000000000156	BppU family phage baseplate upper protein	N/A
PHROG	UHGV-1525517_77	phrog_2310	41.8	0.000000000011	N/A	unknown function
PHROG	UHGV-1525517_78	phrog_962	79.4	5.2e-23	holin	lysis
UniRef90	UHGV-1525517_78	UniRef90_UPI0015714279	174.0	0	phage holin	N/A
eggNOG-mapper	UHGV-1525517_78	1120998.AUFC01000030_gene2252	100.0	1.56e-26	Bacteriophage holin	N/A
Pfam	UHGV-1525517_78	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1525517_78	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1525517_78	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1525517_78	PF04531,TIGR01598,COG5546	N/A	N/A	N/A	N/A
KOfam	UHGV-1525517_79	K11062	104.4	1.1e-30	entD; probable enterotoxin D	N/A
PHROG	UHGV-1525517_79	phrog_670	117.1	2.1e-34	endolysin	lysis
UniRef90	UHGV-1525517_79	UniRef90_UPI00156EE520	447.0	0	amidase	N/A
eggNOG-mapper	UHGV-1525517_79	411490.ANACAC_00703	230.0	0	Ami_2	N/A
Pfam	UHGV-1525517_79	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1525517_79	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-1525517_79	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1525517_79	PF01510,PF08239,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A