UHGV-1527040 (vOTU-061185)

Viral Genome: UHGV-1527040

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1527040
vOTU ID	vOTU-061185
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0284912
Associated BioSample	SAMEA3541557
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.06 (High-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9774
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	68.98
Jumbo phage	No

Genome content
Genome length (bp)	35,077
GC content	44.76%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	94%
Average CDS length (bps)	684.63
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.06)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1527040_2	K08640	85.8	1.1e-26	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1527040_2	phrog_894	79.7	3.9e-23	endolysin	lysis
UniRef90	UHGV-1527040_2	UniRef90_R7GQH8	211.0	0	Peptidase M15	N/A
eggNOG-mapper	UHGV-1527040_2	641112.ACOK01000068_gene2796	218.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1527040_2	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
Pfam	UHGV-1527040_2	PF09374	N/A	N/A	Predicted Peptidoglycan domain	PG_binding_3
Pfam	UHGV-1527040_2	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1527040_2	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1527040_2	PF05951,PF01471,COG3108,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-1527040_3	phrog_199	41.5	0.000000000012	holin	lysis
UniRef90	UHGV-1527040_3	UniRef90_UPI0002E39164	145.0	1.04957e-42	phage holin family protein	N/A
eggNOG-mapper	UHGV-1527040_3	1437610.BREU_1264	52.4	0.000000683	Bacteriophage holin family	N/A
Pfam	UHGV-1527040_3	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1527040_3	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-1527040_3	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1527040_5	phrog_23052	84.3	7.9e-25	N/A	unknown function
eggNOG-mapper	UHGV-1527040_5	471875.RUMLAC_02253	102.0	1.09e-19	N/A	N/A
PHROG	UHGV-1527040_6	phrog_1194	46.3	0.00000000000064	N/A	unknown function
structural_annotation	UHGV-1527040_6	PF20458,TIGR01633,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-1527040_7	phrog_1535	576.5	0	tail length tape measure protein	tail
UniRef90	UHGV-1527040_7	UniRef90_W0U887	564.0	0	Putative minor tail protein	N/A
eggNOG-mapper	UHGV-1527040_7	1160721.RBI_II00528	564.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-1527040_7	COG1006	N/A	N/A	Multisubunit Na+/H+ antiporter, MnhC subunit	N/A
structural_annotation	UHGV-1527040_7	PF20155,TIGR01760,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1527040_8	phrog_706	118.2	6.3e-35	N/A	unknown function
UniRef90	UHGV-1527040_8	UniRef90_UPI000F54B7AC	184.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1527040_8	1160721.RBI_II00530	172.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1527040_8	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1527040_8	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1527040_9	phrog_11299	104.8	7.2e-31	N/A	unknown function
structural_annotation	UHGV-1527040_9	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1527040_10	phrog_3099	128.1	5.7e-38	N/A	unknown function
eggNOG-mapper	UHGV-1527040_10	1160721.RBI_II00532	203.0	0	N/A	N/A
PHROG	UHGV-1527040_11	phrog_3266	103.2	1.8e-30	tail completion	connector
eggNOG-mapper	UHGV-1527040_11	1449050.JNLE01000003_gene3885	117.0	1.41e-31	N/A	N/A
structural_annotation	UHGV-1527040_11	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1527040_12	phrog_556	58.7	9.7e-17	minor head protein	head and packaging
eggNOG-mapper	UHGV-1527040_12	883114.HMPREF9709_01190	60.1	0.000000000652	Minor capsid protein	N/A
structural_annotation	UHGV-1527040_12	PF11114	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1527040_13	873448.STRPO_0288	67.8	0.00000000000422	N/A	N/A
PHROG	UHGV-1527040_14	phrog_137	60.8	1.9e-17	head-tail adaptor Ad1	connector
UniRef90	UHGV-1527040_14	UniRef90_R6C7E8	137.0	2.28e-39	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-1527040_14	157924.Q7Y4I2_9CAUD	91.7	5e-22	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-1527040_14	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-1527040_14	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1527040_15	phrog_267	64.5	1.8e-18	major head protein	head and packaging
UniRef90	UHGV-1527040_15	UniRef90_A0A1C6GMA6	424.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1527040_15	718252.FP2_06660	271.0	0	N/A	N/A
structural_annotation	UHGV-1527040_15	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1527040_16	phrog_233	81.3	2e-23	head scaffolding protein	head and packaging
UniRef90	UHGV-1527040_16	UniRef90_UPI001BAB5DF5	85.1	3.91e-18	N/A	N/A
eggNOG-mapper	UHGV-1527040_16	1423775.BAMN01000011_gene605	78.2	3.39e-16	N/A	N/A
Pfam	UHGV-1527040_16	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1527040_16	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1527040_17	phrog_17688	344.1	0	N/A	unknown function
UniRef90	UHGV-1527040_17	UniRef90_A0A011V4Z3	734.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1527040_17	1280698.AUJS01000007_gene1036	538.0	0	phage terminase, large subunit	N/A
COG	UHGV-1527040_17	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1527040_17	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1527040_18	phrog_338	94.6	1.2e-27	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1527040_18	UniRef90_A0A011WMC8	196.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1527040_18	936375.HMPREF1152_0672	170.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-1527040_18	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1527040_18	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1527040_18	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1527040_19	phrog_355	43.6	0.0000000000048	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1527040_19	UniRef90_UPI0018A09237	124.0	4.87e-35	N/A	N/A
eggNOG-mapper	UHGV-1527040_19	1256908.HMPREF0373_00479	118.0	1.11e-33	N/A	N/A
structural_annotation	UHGV-1527040_19	PF14359	N/A	N/A	N/A	N/A
UniRef90	UHGV-1527040_20	UniRef90_F7V703	59.3	0.000000000228	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit	N/A
PHROG	UHGV-1527040_22	phrog_2494	81.5	8.5e-24	minor head protein	head and packaging
UniRef90	UHGV-1527040_22	UniRef90_A0A3C2BBJ4	217.0	0	Ntox50 domain-containing protein	N/A
eggNOG-mapper	UHGV-1527040_22	697329.Rumal_1691	95.9	2.02e-19	N/A	N/A
Pfam	UHGV-1527040_22	PF15542	N/A	N/A	Bacterial toxin 50	Ntox50
structural_annotation	UHGV-1527040_22	PF15542	N/A	N/A	N/A	N/A
PHROG	UHGV-1527040_23	phrog_104	263.1	0	portal protein	head and packaging
UniRef90	UHGV-1527040_23	UniRef90_A0A373V3S0	489.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1527040_23	665950.HMPREF1025_02537	442.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-1527040_23	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1527040_24	PF16535,PF04545	N/A	N/A	N/A	N/A
PHROG	UHGV-1527040_26	phrog_599	48.7	0.00000000000017	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1527040_26	UniRef90_A0A3A6H5B0	52.4	0.00000114	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-1527040_26	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
KOfam	UHGV-1527040_30	K06919	105.5	4.8e-31	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-1527040_30	phrog_1829	815.4	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1527040_30	UniRef90_A0A348ZC79	935.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-1527040_30	1410670.JHXF01000015_gene2274	890.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-1527040_30	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-1527040_30	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-1527040_30	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-1527040_30	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-1527040_30	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-1527040_30	PF08706,PF05272,PF02257,MF_04000,NF011296,COG3378,COG4983	N/A	N/A	N/A	N/A
PHROG	UHGV-1527040_31	phrog_378	115.1	6.6e-34	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1527040_31	UniRef90_UPI0006852132	221.0	0	N/A	N/A
eggNOG-mapper	UHGV-1527040_31	1410670.JHXF01000015_gene2272	221.0	0	N/A	N/A
Pfam	UHGV-1527040_31	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-1527040_31	PF05037,NF004948	N/A	N/A	N/A	N/A
PHROG	UHGV-1527040_32	phrog_5702	79.6	1.6e-23	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1527040_32	UniRef90_UPI000A4B1865	166.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1527040_32	1410670.JHXF01000015_gene2271	166.0	0	VRR_NUC	N/A
Pfam	UHGV-1527040_32	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1527040_32	PF01870,MF_00130,NF002581,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-1527040_33	K19789	317.0	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-1527040_33	phrog_16	274.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1527040_33	UniRef90_A0A356CZA9	578.0	0	Helicase	N/A
eggNOG-mapper	UHGV-1527040_33	1410670.JHXF01000015_gene2270	559.0	0	helicase	N/A
PADLOC	UHGV-1527040_33	mREase_IV_00005	114.8	5.1e-35	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1527040_33	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1527040_33	PF18766	N/A	N/A	SWI2/SNF2 ATPase	SWI2_SNF2
Pfam	UHGV-1527040_33	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1527040_33	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1527040_33	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1527040_34	phrog_2872	255.9	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1527040_34	UniRef90_UPI001A9B3ECC	365.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1527040_34	754027.HMPREF9554_00709	218.0	0	N/A	N/A
Pfam	UHGV-1527040_34	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1527040_34	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1527040_35	phrog_253	111.4	1.5e-33	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1527040_35	UniRef90_UPI0019171ADA	159.0	1.4013e-45	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-1527040_35	632292.Calhy_0748	67.0	0.0000000000219	Siphovirus Gp157	N/A
Pfam	UHGV-1527040_35	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1527040_35	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1527040_36	phrog_15609	78.5	4.5e-23	N/A	unknown function
UniRef90	UHGV-1527040_36	UniRef90_A0A373VML2	202.0	0	N/A	N/A
eggNOG-mapper	UHGV-1527040_36	641112.ACOK01000073_gene2872	179.0	0	N/A	N/A
structural_annotation	UHGV-1527040_36	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-1527040_38	phrog_8470	231.0	0	N/A	unknown function
UniRef90	UHGV-1527040_38	UniRef90_UPI0019175B9C	317.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1527040_38	641112.ACOK01000073_gene2870	432.0	0	PcfJ-like protein	N/A
Pfam	UHGV-1527040_38	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1527040_38	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1527040_39	phrog_38338	57.8	2.1e-16	N/A	unknown function
eggNOG-mapper	UHGV-1527040_39	1514668.JOOA01000001_gene227	91.3	6e-22	N/A	N/A
PHROG	UHGV-1527040_40	phrog_757	198.6	0	DNA methyltransferase	other
UniRef90	UHGV-1527040_40	UniRef90_A0A417JTT5	251.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1527040_40	1095750.HMPREF9970_0173	241.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1527040_40	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1527040_40	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1527040_43	PF10743	N/A	N/A	N/A	N/A
UniRef90	UHGV-1527040_44	UniRef90_E6MH06	63.9	0.00000000000755	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1527040_44	887929.HMP0721_1290	63.9	0.00000000000127	Helix-turn-helix domain of resolvase	N/A
Pfam	UHGV-1527040_44	PF05339	N/A	N/A	N/A	DUF739
structural_annotation	UHGV-1527040_44	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1527040_45	K01356	134.8	8.99999e-40	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1527040_45	phrog_4	146.5	1.90577e-43	transcriptional repressor	transcription regulation
UniRef90	UHGV-1527040_45	UniRef90_A0A7X5KSC2	189.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1527040_45	641112.ACOK01000103_gene520	241.0	0	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1527040_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1527040_45	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1527040_45	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1527040_45	PF00717,PF12844,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-1527040_46	K10421	40.0	0.000000000021	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-1527040_46	phrog_1847	347.6	0	N/A	unknown function
UniRef90	UHGV-1527040_46	UniRef90_UPI001A9AA57C	368.0	0	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-1527040_46	411471.SUBVAR_05139	365.0	0	T5orf172	N/A
Pfam	UHGV-1527040_46	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-1527040_46	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1527040_46	PF19962	N/A	N/A	N/A	N/A
KOfam	UHGV-1527040_47	K14059	261.6	0	int; integrase	N/A
PHROG	UHGV-1527040_47	phrog_1	233.2	0	integrase	integration and excision
UniRef90	UHGV-1527040_47	UniRef90_A0A1C6EL66	438.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1527040_47	1203606.HMPREF1526_02099	252.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1527040_47	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1527040_47	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1527040_47	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1527040_47	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1527040_48	UniRef90_UPI00189D6BF2	76.6	1.49e-16	N/A	N/A
eggNOG-mapper	UHGV-1527040_48	1499684.CCNP01000023_gene3322	79.7	1.34e-18	N/A	N/A
Pfam	UHGV-1527040_48	PF06124	N/A	N/A	N/A	DUF960
COG	UHGV-1527040_48	COG0827	N/A	N/A	Adenine-specific DNA N6-methylase	N/A