UHGV-1527404 (vOTU-025694)

Viral Genome: UHGV-1527404

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1527404
vOTU ID	vOTU-025694
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0192644
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.65 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9763
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.55
Jumbo phage	No

Genome content
Genome length (bp)	25,303
GC content	40.05%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	43
CDS density	86%
Average CDS length (bps)	507.14
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 55.65)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1527404_1	K07496	114.1	1.6e-33	K07496; putative transposase	N/A
PHROG	UHGV-1527404_1	phrog_506	139.1	4.00001e-41	transposase	integration and excision
UniRef90	UHGV-1527404_1	UniRef90_UPI00156DDEC7	224.0	0	RNA-guided endonuclease TnpB family protein	N/A
eggNOG-mapper	UHGV-1527404_1	411459.RUMOBE_03425	224.0	0	COG COG0675 Transposase and inactivated derivatives	N/A
PADLOC	UHGV-1527404_1	Type_V_V_U4	98.9	6.8e-31	Cas12	CRISPR-CAS
Pfam	UHGV-1527404_1	PF07282	N/A	N/A	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
NCBIFam	UHGV-1527404_1	NF040570.1	N/A	N/A	RNA-guided endonuclease TnpB family protein	N/A
COG	UHGV-1527404_1	COG0675	N/A	N/A	Transposase	N/A
structural_annotation	UHGV-1527404_1	PF07282	N/A	N/A	N/A	N/A
KOfam	UHGV-1527404_2	K07273	205.6	0	acm; lysozyme	N/A
PHROG	UHGV-1527404_2	phrog_6745	175.2	0	endolysin	lysis
UniRef90	UHGV-1527404_2	UniRef90_A0A412ERJ4	944.0	0	NlpC/P60 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-1527404_2	1121115.AXVN01000006_gene2170	416.0	0	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	N/A
Pfam	UHGV-1527404_2	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1527404_2	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
Pfam	UHGV-1527404_2	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1527404_2	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1527404_2	PF01183,PF05382,NF003627,TIGR02219,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1527404_3	610130.Closa_1360	60.5	0.000000000883	Belongs to the 'phage' integrase family	N/A
COG	UHGV-1527404_3	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
KOfam	UHGV-1527404_5	K18830	60.8	2e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1527404_5	phrog_8	50.8	0.000000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-1527404_5	UniRef90_R5GZQ0	135.0	1.37e-38	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1527404_5	748224.HMPREF9436_01444	127.0	3.74e-36	N/A	N/A
PADLOC	UHGV-1527404_5	retron_type_VI_hth_cluster2_1	45.5	0.00000000000032	N/A	Retron
Pfam	UHGV-1527404_5	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1527404_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1527404_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1527404_6	UniRef90_A0A1M6M2C3	76.3	3.41e-17	DNA binding domain-containing protein, excisionase family	N/A
eggNOG-mapper	UHGV-1527404_6	610130.Closa_1362	73.2	9.74e-17	Helix-turn-helix domain	N/A
Pfam	UHGV-1527404_6	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1527404_6	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-1527404_6	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1527404_9	PF21441,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-1527404_10	phrog_7964	167.6	0	N/A	unknown function
UniRef90	UHGV-1527404_10	UniRef90_A0A285PUH1	138.0	1.84e-37	Trimeric LpxA-like	N/A
eggNOG-mapper	UHGV-1527404_10	478749.BRYFOR_05427	109.0	1.81e-27	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-1527404_10	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-1527404_10	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-1527404_10	NF040481	N/A	N/A	N/A	N/A
UniRef90	UHGV-1527404_12	UniRef90_A0A395X9S5	148.0	4.2039e-45	Toxin HipA	N/A
eggNOG-mapper	UHGV-1527404_12	478749.BRYFOR_05417	84.3	1.48e-20	N/A	N/A
structural_annotation	UHGV-1527404_15	NF011879	N/A	N/A	N/A	N/A
UniRef90	UHGV-1527404_16	UniRef90_R6RDX0	81.3	6.4e-19	Arginyl-tRNA synthetase	N/A
PHROG	UHGV-1527404_17	phrog_2872	243.8	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1527404_17	UniRef90_UPI0015715A02	383.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1527404_17	1256908.HMPREF0373_00658	337.0	0	AAA domain	N/A
Pfam	UHGV-1527404_17	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1527404_17	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1527404_18	phrog_59	112.9	2.1e-33	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1527404_18	UniRef90_A0A6S6XZY4	124.0	4.58e-33	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1527404_18	357276.EL88_11520	112.0	1.45e-29	HNH endonuclease domain protein	N/A
PADLOC	UHGV-1527404_18	HEase_00016	83.1	6.7e-24	homing endonuclease	RM
Pfam	UHGV-1527404_18	PF13392	N/A	N/A	HNH endonuclease	HNH_3
Pfam	UHGV-1527404_18	PF07453	N/A	N/A	NUMOD1 domain	NUMOD1
structural_annotation	UHGV-1527404_18	PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-1527404_19	phrog_18107	250.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1527404_19	1256908.HMPREF0373_00659	226.0	0	N/A	N/A
structural_annotation	UHGV-1527404_19	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1527404_20	phrog_3490	156.2	0	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1527404_20	UniRef90_R9KEE1	265.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1527404_20	1256908.HMPREF0373_00660	265.0	0	N/A	N/A
Pfam	UHGV-1527404_20	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-1527404_20	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-1527404_21	K02316	80.0	3.5e-23	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1527404_21	phrog_11992	129.3	3.2e-38	N/A	unknown function
UniRef90	UHGV-1527404_21	UniRef90_A0A3A6GSV7	317.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-1527404_21	411460.RUMTOR_02069	130.0	1.61e-36	CHC2 zinc finger	N/A
PADLOC	UHGV-1527404_21	drt-UG29	47.0	0.0000000000002	DRT	DRT
Pfam	UHGV-1527404_21	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-1527404_21	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1527404_21	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-1527404_22	phrog_8841	490.7	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1527404_22	UniRef90_A0A3A6GQS5	1216.0	0	N/A	N/A
eggNOG-mapper	UHGV-1527404_22	411460.RUMTOR_02070	528.0	0	N/A	N/A
Pfam	UHGV-1527404_22	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-1527404_22	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-1527404_22	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1527404_22	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-1527404_23	K15255	245.5	0	PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]	N/A
PHROG	UHGV-1527404_23	phrog_325	261.3	0	Dda-like helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1527404_23	UniRef90_A0A2V2D011	908.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-1527404_23	1121333.JMLH01000003_gene334	265.0	0	PIF1-like helicase	N/A
PADLOC	UHGV-1527404_23	cluster10	54.8	1.1e-18	RecD_0_IVD	CRISPR-CAS
Pfam	UHGV-1527404_23	PF05970	N/A	N/A	PIF1-like helicase	PIF1
COG	UHGV-1527404_23	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1527404_23	PF05970,PF16277,MF_03176,TIGR01448,COG0507	N/A	N/A	N/A	N/A
PHROG	UHGV-1527404_25	phrog_17690	138.9	1.40004e-41	N/A	unknown function
eggNOG-mapper	UHGV-1527404_25	476272.RUMHYD_03925	197.0	0	N/A	N/A
UniRef90	UHGV-1527404_26	UniRef90_A0A373P4I4	63.5	0.0000000000206	Winged helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-1527404_26	PF01726,COG0640	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1527404_27	411459.RUMOBE_01111	71.6	0.0000000000000778	N/A	N/A
UniRef90	UHGV-1527404_28	UniRef90_A0A2V2D7Q1	132.0	2.44e-37	N/A	N/A
eggNOG-mapper	UHGV-1527404_28	478749.BRYFOR_07594	87.0	3.07e-19	N/A	N/A
eggNOG-mapper	UHGV-1527404_30	476272.RUMHYD_01751	49.7	0.00000228	N/A	N/A
AcrCatalog	UHGV-1527404_30	cluster_11670	43.9	0.0000000156	NA	N/A
eggNOG-mapper	UHGV-1527404_31	397291.C804_00971	74.7	0.00000000000000179	N/A	N/A
structural_annotation	UHGV-1527404_31	PF02701,TIGR03655,COG3677	N/A	N/A	N/A	N/A
PHROG	UHGV-1527404_32	phrog_20593	49.9	0.000000000000048	N/A	unknown function
KOfam	UHGV-1527404_33	K07491	90.3	4e-26	rayT; REP-associated tyrosine transposase	N/A
PHROG	UHGV-1527404_33	phrog_2577	135.4	2.4e-40	transposase	integration and excision
UniRef90	UHGV-1527404_33	UniRef90_A0A4P9EF73	286.0	0	IS200/IS605 family transposase	N/A
eggNOG-mapper	UHGV-1527404_33	457412.RSAG_00470	288.0	0	Transposase IS200 like	N/A
Pfam	UHGV-1527404_33	PF01797	N/A	N/A	Transposase IS200 like	Y1_Tnp
NCBIFam	UHGV-1527404_33	NF033573.1	N/A	N/A	IS200/IS605 family transposase	N/A
COG	UHGV-1527404_33	COG1943	N/A	N/A	REP element-mobilizing transposase RayT	N/A
KOfam	UHGV-1527404_34	K07496	57.0	2.7e-16	K07496; putative transposase	N/A
PHROG	UHGV-1527404_34	phrog_506	50.9	0.000000000000019	transposase	integration and excision
UniRef90	UHGV-1527404_34	UniRef90_C6J860	850.0	0	IS605 OrfB family transposase	N/A
eggNOG-mapper	UHGV-1527404_34	1121115.AXVN01000004_gene1990	870.0	0	TIGRFAM transposase, IS605 OrfB family	N/A
COG	UHGV-1527404_34	COG0675	N/A	N/A	Transposase	N/A
structural_annotation	UHGV-1527404_34	PF18516,MF_00034,NF040570,COG0675	N/A	N/A	N/A	N/A
PHROG	UHGV-1527404_36	phrog_10714	44.7	0.0000000000026	N/A	unknown function
KOfam	UHGV-1527404_39	K06909	382.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1527404_39	phrog_3717	147.0	8.96831e-44	terminase large subunit	head and packaging
UniRef90	UHGV-1527404_39	UniRef90_A0A6L8SYJ6	991.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1527404_39	33035.JPJF01000106_gene3136	530.0	0	Terminase small subunit	N/A
Pfam	UHGV-1527404_39	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1527404_39	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1527404_39	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1527404_39	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1527404_39	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1527404_40	phrog_533	285.2	0	portal protein	head and packaging
UniRef90	UHGV-1527404_40	UniRef90_A0A1C6CDM8	692.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1527404_40	33035.JPJF01000106_gene3135	524.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-1527404_40	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1527404_42	K07496	348.6	0	K07496; putative transposase	N/A
PHROG	UHGV-1527404_42	phrog_506	367.2	0	transposase	integration and excision
UniRef90	UHGV-1527404_42	UniRef90_A0A415HS19	717.0	0	Transposase	N/A
eggNOG-mapper	UHGV-1527404_42	411459.RUMOBE_00229	648.0	0	N/A	N/A
PADLOC	UHGV-1527404_42	Type_V_V_U4	190.4	0	Cas12	CRISPR-CAS
Pfam	UHGV-1527404_42	PF12323	N/A	N/A	Helix-turn-helix domain	HTH_OrfB_IS605
Pfam	UHGV-1527404_42	PF01385	N/A	N/A	Probable transposase	OrfB_IS605
Pfam	UHGV-1527404_42	PF07282	N/A	N/A	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
NCBIFam	UHGV-1527404_42	NF040570.1	N/A	N/A	RNA-guided endonuclease TnpB family protein	N/A
COG	UHGV-1527404_42	COG0675	N/A	N/A	Transposase	N/A
structural_annotation	UHGV-1527404_42	PF07282,PF01385,NF038281,COG0675	N/A	N/A	N/A	N/A