UHGV-1528205 (vOTU-018858)

Viral Genome: UHGV-1528205

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1528205
vOTU ID	vOTU-018858
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0292745
Associated BioSample	SAMN03283246
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.25 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9798
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.91
Jumbo phage	No

Genome content
Genome length (bp)	37,778
GC content	45.61%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	91%
Average CDS length (bps)	594.16
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 82.25)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1528205_2	K14059	186.7	0	int; integrase	N/A
PHROG	UHGV-1528205_2	phrog_1	181.2	0	integrase	integration and excision
UniRef90	UHGV-1528205_2	UniRef90_A0A1C5ZND9	233.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-1528205_2	887325.HMPREF0381_0346	230.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1528205_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1528205_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1528205_2	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1528205_3	K22300	55.0	0.0000000000000018	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1528205_3	phrog_8	65.3	1.5e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1528205_3	UniRef90_UPI000C071D37	82.4	3.91e-17	LexA family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1528205_3	718252.FP2_01140	74.3	0.00000000000000501	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1528205_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1528205_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1528205_3	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1528205_4	UniRef90_UPI001B3C87CA	70.5	0.0000000000000232	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1528205_4	1163671.JAGI01000002_gene3923	48.9	0.000000709	N/A	N/A
structural_annotation	UHGV-1528205_4	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1528205_9	760568.Desku_0919	99.4	5.25e-23	N/A	N/A
structural_annotation	UHGV-1528205_9	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-1528205_10	phrog_155	66.5	4.7e-19	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1528205_10	UniRef90_A0A843H1N8	115.0	1.5e-28	ERF family protein	N/A
eggNOG-mapper	UHGV-1528205_10	891391.LAC30SC_06645	60.5	0.000000017	ERF superfamily	N/A
Pfam	UHGV-1528205_10	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1528205_10	PF04404	N/A	N/A	N/A	N/A
PHROG	UHGV-1528205_11	phrog_72	58.5	1.2e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1528205_11	UniRef90_A0A285PU94	115.0	5.78e-29	Recombinase NinB	N/A
eggNOG-mapper	UHGV-1528205_11	411468.CLOSCI_00314	125.0	5.14e-34	N/A	N/A
structural_annotation	UHGV-1528205_11	PF05772,NF007281	N/A	N/A	N/A	N/A
KOfam	UHGV-1528205_12	K01160	51.7	0.000000000000025	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1528205_12	phrog_140	111.6	6e-33	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1528205_12	UniRef90_A0A3A6JU01	110.0	2.06e-28	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1528205_12	411470.RUMGNA_02196	105.0	2.25e-27	COG COG4570 Holliday junction resolvase	N/A
Pfam	UHGV-1528205_12	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1528205_12	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1528205_12	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1528205_13	phrog_4973	54.6	0.0000000000000017	N/A	unknown function
UniRef90	UHGV-1528205_13	UniRef90_UPI000E3485C3	53.5	0.000000098	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1528205_13	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1528205_13	PF14090,TIGR00373,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-1528205_14	phrog_2514	65.5	5.8e-19	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1528205_14	397291.C804_01603	143.0	1.16e-38	DnaD domain protein	N/A
COG	UHGV-1528205_14	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1528205_14	PF09681,MF_01177,TIGR01610,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-1528205_15	phrog_9804	127.3	1.1e-37	N/A	unknown function
UniRef90	UHGV-1528205_15	UniRef90_A0A395V4Y2	163.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1528205_15	626523.GCWU000342_01038	97.4	1.76e-22	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1528205_15	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1528205_15	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1528205_17	phrog_59	133.7	7.80001e-40	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1528205_17	UniRef90_UPI001E4F9478	111.0	1.46e-27	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1528205_17	767806.D7PQ37_9CAUD	105.0	3.27e-26	HNH endonuclease	N/A
PADLOC	UHGV-1528205_17	HEase_00016	83.9	3.9e-24	homing endonuclease	RM
Pfam	UHGV-1528205_17	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1528205_17	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1528205_17	PF07463,PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-1528205_18	phrog_7566	92.5	2.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-1528205_18	1118057.CAGX01000020_gene1648	70.9	0.00000000000000721	N/A	N/A
KOfam	UHGV-1528205_19	K19170	55.6	5.8e-18	dndC; DNA sulfur modification protein DndC	N/A
PHROG	UHGV-1528205_19	phrog_424	112.7	2.8e-33	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1528205_19	UniRef90_A0A415D743	282.0	0	Adenylyl-sulfate reductase	N/A
eggNOG-mapper	UHGV-1528205_19	1408324.JNJK01000014_gene2016	300.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
PADLOC	UHGV-1528205_19	BrxP_00001	45.0	8.2e-26	BrxP	BREX
Pfam	UHGV-1528205_19	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1528205_19	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1528205_19	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1528205_21	PF15591,MF_00613,NF003076	N/A	N/A	N/A	N/A
KOfam	UHGV-1528205_23	K03111	135.2	7.6e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1528205_23	phrog_44	135.2	4.39999e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1528205_23	UniRef90_R5C772	209.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1528205_23	1280685.AUKC01000081_gene1299	201.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1528205_23	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1528205_23	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1528205_23	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1528205_23	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1528205_23	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1528205_25	K01520	169.2	0	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1528205_25	phrog_135	174.6	0	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1528205_25	UniRef90_A0A3E4YKT3	165.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-1528205_25	357809.Cphy_3038	152.0	1.4013e-45	dUTPase	N/A
Pfam	UHGV-1528205_25	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-1528205_25	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-1528205_25	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-1528205_25	PF00692,MF_00116,NF001862,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-1528205_26	phrog_2245	63.1	4.3e-18	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-1528205_26	1232446.BAIE02000011_gene1613	50.8	0.000000974	N/A	N/A
structural_annotation	UHGV-1528205_26	PF12643,MF_01020,TIGR03188,COG0140	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1528205_27	PF14359,COG3613	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1528205_30	1163671.JAGI01000002_gene1246	83.6	2.47e-18	N/A	N/A
PHROG	UHGV-1528205_34	phrog_15863	132.3	2.4e-39	N/A	unknown function
UniRef90	UHGV-1528205_34	UniRef90_R6MR87	168.0	0	DnaJ-class molecular chaperone with C-terminal Zn finger domain	N/A
eggNOG-mapper	UHGV-1528205_34	1449338.JQLU01000001_gene965	132.0	2.66e-37	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-1528205_34	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
UniRef90	UHGV-1528205_35	UniRef90_UPI001CBBD546	53.5	0.0000000618	antitoxin	N/A
PHROG	UHGV-1528205_37	phrog_2	90.4	3.3e-26	terminase large subunit	head and packaging
UniRef90	UHGV-1528205_37	UniRef90_UPI001F401ABC	410.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1528205_37	316274.Haur_0564	132.0	3.79e-31	N/A	N/A
COG	UHGV-1528205_37	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-1528205_37	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-1528205_38	phrog_3287	139.5	2.09999e-41	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1528205_38	665956.HMPREF1032_03917	580.0	0	N/A	N/A
structural_annotation	UHGV-1528205_38	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1528205_39	665956.HMPREF1032_03918	67.8	0.0000000000733	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
COG	UHGV-1528205_41	COG4675	N/A	N/A	Phage tail collar domain	N/A
eggNOG-mapper	UHGV-1528205_42	742733.HMPREF9469_05009	50.8	0.00000205	N/A	N/A
PHROG	UHGV-1528205_43	phrog_31538	49.8	0.000000000000069	N/A	unknown function
eggNOG-mapper	UHGV-1528205_43	428125.CLOLEP_01433	58.2	0.000000000312	N/A	N/A
PHROG	UHGV-1528205_44	phrog_13589	181.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1528205_44	411460.RUMTOR_01324	217.0	0	N/A	N/A
structural_annotation	UHGV-1528205_45	PF15868,NF012201	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1528205_47	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-1528205_52	phrog_881	84.0	1e-24	holin	lysis
UniRef90	UHGV-1528205_52	UniRef90_UPI0018A8FD4D	101.0	5.71e-27	phage holin	N/A
eggNOG-mapper	UHGV-1528205_52	742740.HMPREF9474_02251	72.8	2.41e-16	Putative phage holin Dp-1	N/A
Pfam	UHGV-1528205_52	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1528205_52	PF16938	N/A	N/A	N/A	N/A
KOfam	UHGV-1528205_53	K07273	136.3	2.9e-40	acm; lysozyme	N/A
PHROG	UHGV-1528205_53	phrog_291	148.4	5.74532e-44	endolysin	lysis
UniRef90	UHGV-1528205_53	UniRef90_D4J8L7	190.0	0	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-1528205_53	201847.Q8LTJ6_9CAUD	171.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-1528205_53	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1528205_53	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
eggNOG-mapper	UHGV-1528205_56	1506994.JNLQ01000004_gene3618	427.0	0	N/A	N/A
UniRef90	UHGV-1528205_57	UniRef90_R6GNZ5	90.1	6.75e-19	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1528205_57	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1528205_57	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A