UHGV-1528410 (vOTU-072396)

Viral Genome: UHGV-1528410

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1528410
vOTU ID	vOTU-072396
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0224264
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.67 (High-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9763
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.49
Jumbo phage	No

Genome content
Genome length (bp)	31,616
GC content	44.05%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	56
CDS density	89%
Average CDS length (bps)	500.14
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 91.67)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1528410_1	K06400	261.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1528410_1	phrog_95	271.7	0	integrase	integration and excision
UniRef90	UHGV-1528410_1	UniRef90_U2BTD7	1155.0	0	Resolvase protein	N/A
eggNOG-mapper	UHGV-1528410_1	1304866.K413DRAFT_0761	681.0	0	Recombinase	N/A
Pfam	UHGV-1528410_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1528410_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1528410_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1528410_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1528410_1	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1528410_2	phrog_2158	205.1	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1528410_2	UniRef90_U2D7K5	678.0	0	Abi-like protein	N/A
eggNOG-mapper	UHGV-1528410_2	476272.RUMHYD_02820	520.0	0	Abi-like protein	N/A
PADLOC	UHGV-1528410_2	AbiD	121.1	2e-35	AbiD	Abi
Pfam	UHGV-1528410_2	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-1528410_2	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-1528410_2	PF07751,COG4823	N/A	N/A	N/A	N/A
PHROG	UHGV-1528410_3	phrog_10934	109.0	2.1e-32	N/A	unknown function
UniRef90	UHGV-1528410_3	UniRef90_A0A080N6H4	107.0	1.81e-29	Putative phage protein	N/A
eggNOG-mapper	UHGV-1528410_3	1410625.JHWK01000002_gene62	115.0	1.94e-33	N/A	N/A
PHROG	UHGV-1528410_4	phrog_7115	138.5	2.29995e-41	N/A	unknown function
UniRef90	UHGV-1528410_4	UniRef90_U2BUL7	300.0	0	bPH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1528410_4	1280698.AUJS01000007_gene1000	228.0	0	Bacterial PH domain	N/A
Pfam	UHGV-1528410_4	PF08000	N/A	N/A	Bacterial PH domain	bPH_1
structural_annotation	UHGV-1528410_4	PF08000,COG3402	N/A	N/A	N/A	N/A
KOfam	UHGV-1528410_6	K18830	72.7	7.4e-21	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1528410_6	phrog_4	55.0	0.000000000000002	transcriptional repressor	transcription regulation
UniRef90	UHGV-1528410_6	UniRef90_U2BBK0	271.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1528410_6	1235798.C817_05486	115.0	2.84e-31	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1528410_6	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1528410_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1528410_6	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1528410_9	742740.HMPREF9474_00081	47.0	0.00000962	N/A	N/A
PHROG	UHGV-1528410_10	phrog_3584	176.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1528410_10	UniRef90_A0A1I5LZL1	178.0	0	Relaxase/Mobilisation nuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-1528410_10	742740.HMPREF9474_04323	305.0	0	N/A	N/A
KOfam	UHGV-1528410_13	K03469	53.0	0.000000000000007	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-1528410_13	phrog_531	49.9	0.000000000000061	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1528410_13	UniRef90_U2BBG5	254.0	0	Ribonuclease H domain protein	N/A
eggNOG-mapper	UHGV-1528410_13	742740.HMPREF9474_04320	186.0	0	RNA-DNA hybrid ribonuclease activity	N/A
Pfam	UHGV-1528410_13	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1528410_13	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1528410_13	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-1528410_14	phrog_7566	95.4	3.1e-28	N/A	unknown function
UniRef90	UHGV-1528410_14	UniRef90_A0A414QES0	54.3	0.000000303	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-1528410_14	742740.HMPREF9474_04319	241.0	0	N/A	N/A
PHROG	UHGV-1528410_22	phrog_16397	100.4	7.9e-30	N/A	unknown function
eggNOG-mapper	UHGV-1528410_22	742740.HMPREF9474_04316	132.0	9.05001e-40	N/A	N/A
PHROG	UHGV-1528410_25	phrog_24368	82.8	3.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-1528410_25	742740.HMPREF9474_04313	277.0	0	N/A	N/A
KOfam	UHGV-1528410_26	K04763	191.1	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1528410_26	phrog_1	147.0	1.59748e-43	integrase	integration and excision
UniRef90	UHGV-1528410_26	UniRef90_A0A6N3HKR6	440.0	0	Tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-1528410_26	742740.HMPREF9474_04312	663.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1528410_26	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1528410_26	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1528410_26	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1528410_26	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-1528410_28	phrog_11237	103.8	1.5e-30	N/A	unknown function
eggNOG-mapper	UHGV-1528410_28	1235798.C817_04578	154.0	0	N/A	N/A
PHROG	UHGV-1528410_29	phrog_338	107.5	1.5e-31	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1528410_29	UniRef90_A0A6N3HNE1	245.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1528410_29	1280698.AUJS01000007_gene1032	189.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-1528410_29	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1528410_29	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1528410_29	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1528410_30	phrog_104	290.8	0	portal protein	head and packaging
UniRef90	UHGV-1528410_30	UniRef90_A0A1C5Y923	623.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-1528410_30	665950.HMPREF1025_02537	604.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1528410_30	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1528410_30	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1528410_31	phrog_2494	360.1	0	minor head protein	head and packaging
UniRef90	UHGV-1528410_31	UniRef90_UPI001F3BD4CE	300.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-1528410_31	665950.HMPREF1025_02536	266.0	0	N/A	N/A
PHROG	UHGV-1528410_32	phrog_17688	338.9	0	N/A	unknown function
UniRef90	UHGV-1528410_32	UniRef90_U2C0K2	928.0	0	Putative phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-1528410_32	665950.HMPREF1025_02532	726.0	0	phage terminase, large subunit	N/A
COG	UHGV-1528410_32	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1528410_32	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1528410_33	phrog_233	95.7	6.5e-28	head scaffolding protein	head and packaging
UniRef90	UHGV-1528410_33	UniRef90_UPI001961E2FD	119.0	1.25e-31	N/A	N/A
eggNOG-mapper	UHGV-1528410_33	706433.HMPREF9430_01266	106.0	3.42e-27	N/A	N/A
Pfam	UHGV-1528410_33	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1528410_33	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1528410_34	phrog_32396	146.9	3.64338e-44	N/A	unknown function
UniRef90	UHGV-1528410_34	UniRef90_A0A6N3HLP2	579.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-1528410_34	1321784.HMPREF1987_01073	390.0	0	Phage capsid family	N/A
Pfam	UHGV-1528410_34	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1528410_34	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1528410_34	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1528410_36	phrog_137	123.8	6.6e-37	head-tail adaptor Ad1	connector
UniRef90	UHGV-1528410_36	UniRef90_A0A6N3HN80	263.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-1528410_36	1321372.AQQB01000060_gene65	176.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-1528410_36	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-1528410_36	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1528410_37	phrog_501	91.5	7.3e-27	head closure Hc1	connector
UniRef90	UHGV-1528410_37	UniRef90_A0A0R1K4H9	145.0	7.553e-43	N/A	N/A
eggNOG-mapper	UHGV-1528410_37	1231377.C426_1734	155.0	0	N/A	N/A
structural_annotation	UHGV-1528410_37	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1528410_38	phrog_387	59.9	4e-17	neck protein	connector
eggNOG-mapper	UHGV-1528410_38	936375.HMPREF1152_0683	65.9	0.000000000000277	N/A	N/A
PHROG	UHGV-1528410_39	phrog_123	56.1	6.7e-16	tail terminator	connector
eggNOG-mapper	UHGV-1528410_39	1280698.AUJS01000007_gene1043	132.0	1.2e-38	N/A	N/A
structural_annotation	UHGV-1528410_39	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1528410_40	phrog_117	163.4	0	major tail protein	tail
UniRef90	UHGV-1528410_40	UniRef90_UPI0011829489	332.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1528410_40	748224.HMPREF9436_00696	240.0	0	domain, Protein	N/A
COG	UHGV-1528410_40	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1528410_40	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1528410_41	phrog_1526	83.2	2.3e-24	N/A	unknown function
UniRef90	UHGV-1528410_41	UniRef90_F3MWB0	74.7	8.68e-16	N/A	N/A
eggNOG-mapper	UHGV-1528410_41	875454.BAEW01000017_gene1589	72.0	0.00000000000000182	N/A	N/A
PHROG	UHGV-1528410_42	phrog_1633	133.4	8.8e-40	N/A	unknown function
UniRef90	UHGV-1528410_42	UniRef90_A0A139QHL2	119.0	1.44e-32	N/A	N/A
eggNOG-mapper	UHGV-1528410_42	585203.SMSK564_1277	112.0	1.47e-30	N/A	N/A
Pfam	UHGV-1528410_42	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-1528410_42	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-1528410_43	phrog_6900	266.8	0	tail length tape measure protein	tail
UniRef90	UHGV-1528410_43	UniRef90_A0A316Q0J4	277.0	0	PblA	N/A
eggNOG-mapper	UHGV-1528410_43	585203.SMSK564_1276	333.0	0	phage tail tape measure protein	N/A
COG	UHGV-1528410_43	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1528410_43	PF20155,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1528410_44	phrog_33	55.3	0.0000000000000011	distal tail protein Dit	tail
UniRef90	UHGV-1528410_44	UniRef90_A0A413WS74	227.0	0	MtfA protein	N/A
eggNOG-mapper	UHGV-1528410_44	411490.ANACAC_00709	202.0	0	phage tail	N/A
COG	UHGV-1528410_44	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1528410_44	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1528410_45	phrog_3558	362.6	0	tail protein	tail
UniRef90	UHGV-1528410_45	UniRef90_A0A6N3HKW0	1422.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1528410_45	610130.Closa_0754	383.0	0	N/A	N/A
Pfam	UHGV-1528410_45	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-1528410_45	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1528410_45	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1528410_46	phrog_18444	44.9	0.0000000000015	N/A	unknown function
UniRef90	UHGV-1528410_46	UniRef90_A0A7X5CHF3	56.6	0.00000000342	Peptide chain release factor 2	N/A
UniRef90	UHGV-1528410_47	UniRef90_A0A412ZBR4	61.2	0.000000245	H_lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-1528410_47	610130.Closa_0759	57.4	0.00000123	N/A	N/A
eggNOG-mapper	UHGV-1528410_48	742740.HMPREF9474_04291	169.0	0	N/A	N/A
NCBIFam	UHGV-1528410_49	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-1528410_49	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-1528410_50	phrog_199	72.5	4.4e-21	holin	lysis
UniRef90	UHGV-1528410_50	UniRef90_A0A414ADK3	268.0	0	Holin	N/A
eggNOG-mapper	UHGV-1528410_50	742740.HMPREF9474_04290	311.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1528410_50	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1528410_50	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1528410_50	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1528410_50	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1528410_51	phrog_2649	47.4	0.00000000000037	endolysin	lysis
UniRef90	UHGV-1528410_51	UniRef90_A0A6N3EQT3	483.0	0	Peptidoglycan binding domain protein	N/A
eggNOG-mapper	UHGV-1528410_51	397287.C807_01339	143.0	7.33e-38	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1528410_51	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1528410_51	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1528410_51	PF01471,PF00877,NF033742,NF038080,COG0791	N/A	N/A	N/A	N/A
KOfam	UHGV-1528410_52	K19118	242.6	0	csd2, cas7; CRISPR-associated protein Csd2	N/A
UniRef90	UHGV-1528410_52	UniRef90_E7GTP3	572.0	0	Csd2 family CRISPR-associated protein	N/A
eggNOG-mapper	UHGV-1528410_52	742740.HMPREF9474_04288	572.0	0	N/A	N/A
PADLOC	UHGV-1528410_52	cas_Csd2	262.1	0	CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG	CRISPR-CAS
Pfam	UHGV-1528410_52	PF05107	N/A	N/A	CRISPR-associated protein Cas7	Cas_Cas7
NCBIFam	UHGV-1528410_52	TIGR02589.1	N/A	N/A	type I-C CRISPR-associated protein Cas7/Csd2	N/A
COG	UHGV-1528410_52	COG3649	N/A	N/A	CRISPR-Cas system type I effector complex subunit Cas7, RAMP superfamily	N/A
structural_annotation	UHGV-1528410_52	PF05107,TIGR02589,COG3649	N/A	N/A	N/A	N/A
PHROG	UHGV-1528410_53	phrog_25567	76.8	2.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-1528410_53	411469.EUBHAL_00738	74.7	0.00000000000000111	N/A	N/A
AcrCatalog	UHGV-1528410_53	cluster_37554	228.0	0	NA	N/A
AcrCatalog	UHGV-1528410_54	cluster_29073	147.0	0	NA	N/A
UniRef90	UHGV-1528410_56	UniRef90_UPI001C00B315	169.0	0	pyocin knob domain-containing protein	N/A