UHGV-1529555 (vOTU-071350)

Viral Genome: UHGV-1529555

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1529555
vOTU ID	vOTU-071350
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0217682
Associated BioSample	SAMEA2738093
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.63 (High-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9745
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.99
Jumbo phage	No

Genome content
Genome length (bp)	28,891
GC content	45.68%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	40
CDS density	89%
Average CDS length (bps)	639.45
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 97.63)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1529555_1	phrog_297	57.3	2.7e-16	holin	lysis
UniRef90	UHGV-1529555_1	UniRef90_C8WA86	190.0	0	Holin, phage phi LC3 family	N/A
eggNOG-mapper	UHGV-1529555_1	521095.Apar_0594	190.0	0	COG5546 Small integral membrane protein	N/A
Pfam	UHGV-1529555_1	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1529555_1	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1529555_1	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-1529555_3	phrog_3558	324.2	0	tail protein	tail
UniRef90	UHGV-1529555_3	UniRef90_S2ZPQ2	498.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1529555_3	1203602.HMPREF1527_01079	498.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1529555_3	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1529555_3	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1529555_3	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1529555_3	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1529555_4	phrog_24267	110.9	1.3e-32	N/A	unknown function
UniRef90	UHGV-1529555_4	UniRef90_R5LPM8	81.6	4.76e-17	Putative truncated prophage LambdaSa1 minor structural protein	N/A
eggNOG-mapper	UHGV-1529555_4	1203602.HMPREF1527_01080	257.0	0	N/A	N/A
structural_annotation	UHGV-1529555_4	COG4675	N/A	N/A	N/A	N/A
UniRef90	UHGV-1529555_5	UniRef90_A0A8B2WXS9	68.9	0.000000000381	MtfA protein	N/A
eggNOG-mapper	UHGV-1529555_5	1203602.HMPREF1527_01081	377.0	0	N/A	N/A
structural_annotation	UHGV-1529555_5	PF20195,PF21621,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1529555_6	phrog_6900	188.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1529555_6	UniRef90_A0A8A6QZT4	187.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1529555_6	1203602.HMPREF1527_01082	692.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-1529555_6	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1529555_6	MF_04138	N/A	N/A	N/A	N/A
PHROG	UHGV-1529555_7	phrog_3656	88.0	1.2e-25	tail assembly chaperone	tail
eggNOG-mapper	UHGV-1529555_7	1203602.HMPREF1527_01083	158.0	0	N/A	N/A
PHROG	UHGV-1529555_9	phrog_117	161.5	0	major tail protein	tail
UniRef90	UHGV-1529555_9	UniRef90_A0A229VW71	172.0	0	Bacterial Ig-like domain (Group 2)	N/A
eggNOG-mapper	UHGV-1529555_9	1203602.HMPREF1527_01085	283.0	0	N/A	N/A
structural_annotation	UHGV-1529555_9	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1529555_10	1203602.HMPREF1527_01086	175.0	0	N/A	N/A
structural_annotation	UHGV-1529555_10	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1529555_11	phrog_387	58.3	1.2e-16	neck protein	connector
PHROG	UHGV-1529555_12	phrog_501	58.3	1.5e-16	head closure Hc1	connector
structural_annotation	UHGV-1529555_12	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1529555_13	phrog_137	62.8	5e-18	head-tail adaptor Ad1	connector
UniRef90	UHGV-1529555_13	UniRef90_UPI001964BF71	64.7	0.0000000000861	Gp19/Gp15/Gp42 family protein	N/A
eggNOG-mapper	UHGV-1529555_13	1437608.BBIA_2150	65.5	0.0000000000137	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-1529555_13	PF09355	N/A	N/A	N/A	Phage_Gp19
PHROG	UHGV-1529555_14	phrog_10	103.4	2.7e-30	major head protein	head and packaging
UniRef90	UHGV-1529555_14	UniRef90_S3AR31	447.0	0	HK97 family phage major capsid protein	N/A
eggNOG-mapper	UHGV-1529555_14	1203602.HMPREF1527_01090	447.0	0	Phage capsid family	N/A
structural_annotation	UHGV-1529555_14	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1529555_15	phrog_9857	91.4	3.8e-27	head scaffolding protein	head and packaging
UniRef90	UHGV-1529555_15	UniRef90_A0A0G3H099	57.4	0.000000246	N/A	N/A
eggNOG-mapper	UHGV-1529555_15	1203602.HMPREF1527_01091	100.0	6.53e-25	N/A	N/A
PHROG	UHGV-1529555_16	phrog_13257	192.4	0	head maturation protease	head and packaging
eggNOG-mapper	UHGV-1529555_16	1203602.HMPREF1527_01093	288.0	0	N/A	N/A
PHROG	UHGV-1529555_17	phrog_104	235.5	0	portal protein	head and packaging
UniRef90	UHGV-1529555_17	UniRef90_A0A7X8RSF9	513.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1529555_17	1203602.HMPREF1527_01094	694.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1529555_17	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1529555_17	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1529555_18	phrog_9	112.0	5.9e-33	terminase large subunit	head and packaging
UniRef90	UHGV-1529555_18	UniRef90_A0A133XRR7	570.0	0	Putative phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-1529555_18	1203602.HMPREF1527_01095	748.0	0	Terminase	N/A
COG	UHGV-1529555_18	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1529555_18	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1529555_20	1203602.HMPREF1527_01100	87.4	1.36e-19	N/A	N/A
structural_annotation	UHGV-1529555_20	PF04545,MF_00674,TIGR03879	N/A	N/A	N/A	N/A
KOfam	UHGV-1529555_21	K03111	135.2	7.4e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1529555_21	phrog_44	136.0	2.5e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1529555_21	UniRef90_C8WA62	270.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1529555_21	521095.Apar_0570	270.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1529555_21	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1529555_21	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1529555_21	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1529555_21	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1529555_21	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1529555_24	K14059	196.0	0	int; integrase	N/A
PHROG	UHGV-1529555_24	phrog_1	191.2	0	integrase	integration and excision
UniRef90	UHGV-1529555_24	UniRef90_C8WA59	761.0	0	Integrase family protein	N/A
eggNOG-mapper	UHGV-1529555_24	521095.Apar_0567	761.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1529555_24	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-1529555_24	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1529555_24	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1529555_24	PF00589,PF13102,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1529555_26	UniRef90_UPI001EF9F008	85.5	0.00000000000000949	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1529555_26	1123312.KB904568_gene379	99.8	1.33e-19	domain protein	N/A
Pfam	UHGV-1529555_26	PF17961	N/A	N/A	Bacterial Ig domain	Big_8
Pfam	UHGV-1529555_26	PF05737	N/A	N/A	Collagen binding domain	Collagen_bind
COG	UHGV-1529555_26	COG4932	N/A	N/A	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	N/A
structural_annotation	UHGV-1529555_26	PF11766,NF033845,COG1470	N/A	N/A	N/A	N/A
PHROG	UHGV-1529555_27	phrog_355	62.7	4.9e-18	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1529555_27	UniRef90_UPI001648C3CE	65.9	0.0000000000338	N/A	N/A
eggNOG-mapper	UHGV-1529555_27	521095.Apar_0563	207.0	0	N/A	N/A
Pfam	UHGV-1529555_27	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-1529555_27	PF14359	N/A	N/A	N/A	N/A
PHROG	UHGV-1529555_28	phrog_419	108.5	7e-32	N/A	unknown function
UniRef90	UHGV-1529555_28	UniRef90_UPI001C4DCDCC	91.3	5.15e-22	PGDYG domain-containing protein	N/A
eggNOG-mapper	UHGV-1529555_28	553184.ATORI0001_1196	176.0	0	N/A	N/A
structural_annotation	UHGV-1529555_28	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-1529555_29	phrog_21525	71.5	1.1e-20	N/A	unknown function
Pfam	UHGV-1529555_29	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
structural_annotation	UHGV-1529555_30	PF02559,TIGR03318,COG1329	N/A	N/A	N/A	N/A
KOfam	UHGV-1529555_33	K07741	62.5	1.4e-17	antB; anti-repressor protein	N/A
PHROG	UHGV-1529555_33	phrog_130	171.9	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1529555_33	UniRef90_C8WA47	375.0	0	Prophage antirepressor	N/A
eggNOG-mapper	UHGV-1529555_33	521095.Apar_0554	375.0	0	Antirepressor	N/A
Pfam	UHGV-1529555_33	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1529555_33	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1529555_33	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1529555_33	PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-1529555_36	phrog_4583	42.0	0.000000000012	transcriptional repressor	transcription regulation
Pfam	UHGV-1529555_36	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1529555_36	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1529555_37	K22300	63.9	3.8e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1529555_37	phrog_2967	49.8	0.000000000000062	transcriptional regulator	transcription regulation
UniRef90	UHGV-1529555_37	UniRef90_A0A2T3EXA1	51.2	0.00000307	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1529555_37	1487953.JMKF01000091_gene5277	52.4	0.000000103	Helix-turn-helix domain	N/A
Pfam	UHGV-1529555_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1529555_37	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1529555_37	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1529555_38	521095.Apar_0548	548.0	0	N/A	N/A
structural_annotation	UHGV-1529555_38	PF20505,MF_00194,NF001462	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1529555_39	521095.Apar_0547	299.0	0	N/A	N/A
KOfam	UHGV-1529555_40	K14059	191.3	0	int; integrase	N/A
PHROG	UHGV-1529555_40	phrog_1	195.9	0	integrase	integration and excision
UniRef90	UHGV-1529555_40	UniRef90_C8WA39	719.0	0	Integrase family protein	N/A
eggNOG-mapper	UHGV-1529555_40	521095.Apar_0546	719.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1529555_40	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-1529555_40	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1529555_40	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1529555_40	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A