UHGV-1530143 (vOTU-009214)

Viral Genome: UHGV-1530143

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1530143
vOTU ID	vOTU-009214
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0268487
Associated BioSample	SAMEA2466905
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9775
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.97
Jumbo phage	No

Genome content
Genome length (bp)	38,777
GC content	42.79%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	94%
Average CDS length (bps)	664.04
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1530143_1	K07273	184.9	0	acm; lysozyme	N/A
PHROG	UHGV-1530143_1	phrog_6745	177.5	0	endolysin	lysis
UniRef90	UHGV-1530143_1	UniRef90_A0A417PG91	931.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-1530143_1	457412.RSAG_00790	742.0	0	CHAP domain	N/A
Pfam	UHGV-1530143_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1530143_1	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1530143_1	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1530143_1	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1530143_1	PF01183,TIGR02594,TIGR04303,COG3757,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-1530143_2	phrog_443	74.9	1.6e-21	holin	lysis
UniRef90	UHGV-1530143_2	UniRef90_UPI000E5CA950	120.0	7.62e-34	holin	N/A
eggNOG-mapper	UHGV-1530143_2	626523.GCWU000342_01012	87.0	2.38e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1530143_2	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1530143_2	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-1530143_3	phrog_937	65.6	9e-19	hemolysin	other
eggNOG-mapper	UHGV-1530143_3	411459.RUMOBE_01081	124.0	1.12e-34	N/A	N/A
PHROG	UHGV-1530143_4	phrog_1382	47.7	0.00000000000012	N/A	unknown function
eggNOG-mapper	UHGV-1530143_5	457412.RSAG_04672	104.0	1.45e-27	N/A	N/A
KOfam	UHGV-1530143_6	K00986	70.0	3.3e-20	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-1530143_6	phrog_1423	179.1	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1530143_6	UniRef90_A0A417ANK1	751.0	0	Reverse transcriptase	N/A
eggNOG-mapper	UHGV-1530143_6	33035.JPJF01000043_gene1000	457.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-1530143_6	icity0040	42.0	0.0000000000013	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-1530143_6	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-1530143_6	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-1530143_6	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-1530143_7	phrog_17147	444.0	0	N/A	unknown function
UniRef90	UHGV-1530143_7	UniRef90_A0A1M6MWL0	656.0	0	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	N/A
eggNOG-mapper	UHGV-1530143_7	33035.JPJF01000043_gene1001	661.0	0	N/A	N/A
PHROG	UHGV-1530143_9	phrog_9886	805.9	0	N/A	unknown function
UniRef90	UHGV-1530143_9	UniRef90_A0A417PG56	2186.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1530143_9	1123075.AUDP01000020_gene1524	719.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1530143_9	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-1530143_9	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-1530143_9	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1530143_9	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1530143_10	phrog_33	50.0	0.000000000000064	distal tail protein Dit	tail
UniRef90	UHGV-1530143_10	UniRef90_A0A1M6MWV9	311.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1530143_10	1235792.C808_00094	287.0	0	phage tail	N/A
COG	UHGV-1530143_10	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1530143_10	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1530143_11	K10421	51.2	0.000000000000011	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-1530143_11	phrog_1272	575.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1530143_11	UniRef90_A0A417PG60	1719.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1530143_11	397288.C806_05080	513.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-1530143_11	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1530143_11	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1530143_11	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1530143_11	PF10145,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1530143_12	phrog_3033	68.2	9.4e-20	N/A	unknown function
UniRef90	UHGV-1530143_12	UniRef90_A0A2X2UJ60	80.9	3.89e-19	Phage-like protein	N/A
eggNOG-mapper	UHGV-1530143_12	1235799.C818_01010	86.7	3.35e-22	N/A	N/A
PHROG	UHGV-1530143_13	phrog_709	118.1	4.5e-35	N/A	unknown function
eggNOG-mapper	UHGV-1530143_13	610130.Closa_0750	143.0	2.4803e-42	N/A	N/A
structural_annotation	UHGV-1530143_13	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1530143_14	phrog_88	153.0	1.4013e-45	major tail protein	tail
UniRef90	UHGV-1530143_14	UniRef90_A0A417ANR0	397.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1530143_14	764299.STRIC_2428	236.0	0	phage tail protein	N/A
NCBIFam	UHGV-1530143_14	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1530143_14	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1530143_15	phrog_78	41.5	0.00000000002	tail terminator	connector
eggNOG-mapper	UHGV-1530143_15	610130.Closa_0748	129.0	1.12e-37	N/A	N/A
structural_annotation	UHGV-1530143_15	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1530143_16	phrog_5	47.7	0.00000000000043	tail completion or Neck1 protein	connector
UniRef90	UHGV-1530143_16	UniRef90_A0A417PG70	224.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1530143_16	397287.C807_04036	98.6	6.92e-25	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1530143_16	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1530143_16	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1530143_17	1235792.C808_00088	135.0	3.21e-39	N/A	N/A
structural_annotation	UHGV-1530143_17	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1530143_18	phrog_749	71.9	7.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-1530143_18	1235792.C808_00087	135.0	3.81e-40	N/A	N/A
PHROG	UHGV-1530143_19	phrog_10	133.5	2.4e-39	major head protein	head and packaging
UniRef90	UHGV-1530143_19	UniRef90_A0A417PG62	907.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1530143_19	1235792.C808_00086	680.0	0	Phage capsid family	N/A
Pfam	UHGV-1530143_19	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1530143_19	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-1530143_19	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1530143_19	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1530143_19	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1530143_20	K01358	118.2	9.6e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1530143_20	phrog_94	206.3	0	head maturation protease	head and packaging
UniRef90	UHGV-1530143_20	UniRef90_A0A417PG92	512.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1530143_20	1235792.C808_00085	283.0	0	Clp protease	N/A
Pfam	UHGV-1530143_20	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1530143_20	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1530143_20	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1530143_21	phrog_12	100.6	1.3e-29	portal protein	head and packaging
UniRef90	UHGV-1530143_21	UniRef90_A0A417PG64	729.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1530143_21	1235792.C808_00084	426.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1530143_21	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1530143_21	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1530143_21	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1530143_21	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1530143_22	phrog_9	247.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-1530143_22	UniRef90_A0A417PG72	1154.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1530143_22	1235792.C808_00083	931.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-1530143_22	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1530143_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1530143_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1530143_22	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1530143_23	phrog_5110	98.2	4.9e-29	terminase small subunit	head and packaging
UniRef90	UHGV-1530143_23	UniRef90_A0A1M6MVK9	154.0	0	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1530143_23	1235792.C808_00082	162.0	0	N/A	N/A
Pfam	UHGV-1530143_23	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1530143_23	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1530143_24	phrog_119	47.5	0.00000000000023	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1530143_24	UniRef90_A0A417PG49	176.0	0	N/A	N/A
eggNOG-mapper	UHGV-1530143_24	1235792.C808_00081	142.0	2.5924e-43	HNH nucleases	N/A
Pfam	UHGV-1530143_24	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1530143_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1530143_26	phrog_11237	64.7	1.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-1530143_26	1235798.C817_02584	103.0	2.32e-26	N/A	N/A
PHROG	UHGV-1530143_27	phrog_6072	45.2	0.0000000000011	N/A	unknown function
PHROG	UHGV-1530143_28	phrog_7566	95.8	2.2e-28	N/A	unknown function
eggNOG-mapper	UHGV-1530143_28	411459.RUMOBE_00948	95.5	1.27e-23	N/A	N/A
KOfam	UHGV-1530143_31	K03111	133.7	2.1e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1530143_31	phrog_44	131.8	5e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1530143_31	UniRef90_A0A417PG59	266.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1530143_31	457412.RSAG_03244	210.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1530143_31	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1530143_31	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1530143_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1530143_31	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1530143_31	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1530143_33	phrog_3502	41.5	0.000000000026	N/A	unknown function
UniRef90	UHGV-1530143_33	UniRef90_A0A417ANR7	174.0	0	LexA_DNA_bind domain-containing protein	N/A
Pfam	UHGV-1530143_33	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-1530143_33	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1530143_33	PF01726,MF_00732,TIGR00738,COG3388	N/A	N/A	N/A	N/A
UniRef90	UHGV-1530143_37	UniRef90_A0A1Q6JLU8	58.2	0.0000000983	PH domain-containing protein	N/A
eggNOG-mapper	UHGV-1530143_37	411470.RUMGNA_00212	178.0	0	N/A	N/A
KOfam	UHGV-1530143_39	K03497	51.5	0.00000000000002	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1530143_39	phrog_15077	146.4	3.79752e-43	N/A	unknown function
UniRef90	UHGV-1530143_39	UniRef90_A0A417PG73	894.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1530143_39	1235792.C808_00610	141.0	1.28e-33	ParB-like nuclease domain	N/A
Pfam	UHGV-1530143_39	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1530143_39	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1530143_39	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-1530143_40	K03496	188.7	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1530143_40	phrog_164	142.1	3.99931e-42	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1530143_40	UniRef90_A0A417PG63	494.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-1530143_40	97139.C824_00725	235.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-1530143_40	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1530143_40	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1530143_40	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
UniRef90	UHGV-1530143_42	UniRef90_A0A1C6IUE3	173.0	0	Ribonuclease H	N/A
eggNOG-mapper	UHGV-1530143_42	1280698.AUJS01000007_gene1015	76.6	0.0000000000000014	RNA-DNA hybrid ribonuclease activity	N/A
COG	UHGV-1530143_42	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1530143_42	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-1530143_43	phrog_3584	141.8	4.40008e-42	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1530143_43	1235792.C808_03084	250.0	0	N/A	N/A
structural_annotation	UHGV-1530143_43	PF01446	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1530143_46	1235792.C808_00637	44.7	0.00000865	N/A	N/A
PHROG	UHGV-1530143_47	phrog_59	67.4	1.8e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1530143_47	UniRef90_A0A417ANM8	409.0	0	NUMOD4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1530143_47	1410650.JHWL01000037_gene604	154.0	8.40779e-45	N/A	N/A
PADLOC	UHGV-1530143_47	HEase_00016	54.4	4.4e-17	homing endonuclease	RM
Pfam	UHGV-1530143_47	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1530143_47	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1530143_47	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
UniRef90	UHGV-1530143_52	UniRef90_UPI00156EE44C	281.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1530143_52	742740.HMPREF9474_04328	105.0	3.54e-27	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1530143_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1530143_52	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1530143_52	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1530143_53	phrog_16443	49.1	0.000000000000069	N/A	unknown function
eggNOG-mapper	UHGV-1530143_53	334390.LAF_0659	50.8	0.00000117	N/A	N/A
AcrCatalog	UHGV-1530143_53	cluster_1135	45.1	0.00000000514	NA	N/A
UniRef90	UHGV-1530143_54	UniRef90_A0A417PG51	281.0	0	BIG2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1530143_54	445971.ANASTE_01864	63.9	0.000000000864	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-1530143_54	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-1530143_54	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
KOfam	UHGV-1530143_55	K06400	286.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1530143_55	phrog_95	312.5	0	integrase	integration and excision
UniRef90	UHGV-1530143_55	UniRef90_A0A417ANQ9	880.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1530143_55	1123075.AUDP01000026_gene425	385.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1530143_55	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1530143_55	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1530143_55	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1530143_55	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1530143_55	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A