UHGV-1534339 (vOTU-077773)

Viral Genome: UHGV-1534339

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1534339
vOTU ID	vOTU-077773
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0321219
Associated BioSample	SAMN02334145
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.83 (High-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9747
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.72
Jumbo phage	No

Genome content
Genome length (bp)	44,818
GC content	32.86%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	76
CDS density	88%
Average CDS length (bps)	516.59
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.83)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1534339_1	K01447	53.1	0.0000000000000058	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1534339_1	phrog_7698	162.8	0	endolysin	lysis
UniRef90	UHGV-1534339_1	UniRef90_A0A413UF85	471.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-1534339_1	1125712.HMPREF1316_2631	142.0	2.03e-39	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1534339_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1534339_1	PF08460	N/A	N/A	Bacterial SH3 domain	SH3_5
COG	UHGV-1534339_1	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1534339_1	PF01510,PF18342,PF08239,MF_04111,NF040670,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1534339_3	phrog_443	54.0	0.0000000000000045	holin	lysis
UniRef90	UHGV-1534339_3	UniRef90_A0A2U2ELA1	78.6	9.53e-18	Membrane protein	N/A
eggNOG-mapper	UHGV-1534339_3	476272.RUMHYD_01759	85.1	5.63e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1534339_3	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1534339_3	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-1534339_5	phrog_20016	62.4	5.5e-18	N/A	unknown function
UniRef90	UHGV-1534339_5	UniRef90_A0A395WF88	258.0	0	BclA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1534339_5	1226322.HMPREF1545_00077	61.2	0.000000000585	N/A	N/A
structural_annotation	UHGV-1534339_5	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-1534339_6	UniRef90_A0A8F0WFQ8	70.1	0.0000000000748	Outer capsid protein/viral fiber	N/A
eggNOG-mapper	UHGV-1534339_6	476272.RUMHYD_01770	114.0	8.99e-29	N/A	N/A
eggNOG-mapper	UHGV-1534339_11	929506.CbC4_0491	61.2	0.000000434	polysaccharide deacetylase	N/A
COG	UHGV-1534339_11	COG0726	N/A	N/A	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	N/A
structural_annotation	UHGV-1534339_12	PF16407,TIGR02657,COG3794	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1534339_13	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1534339_14	PF10651,COG5513	N/A	N/A	N/A	N/A
UniRef90	UHGV-1534339_15	UniRef90_UPI00189812AD	64.3	0.0000000383	phage tail protein	N/A
eggNOG-mapper	UHGV-1534339_15	1232446.BAIE02000002_gene836	75.9	0.00000000000185	Phage minor structural protein	N/A
COG	UHGV-1534339_15	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-1534339_16	phrog_1067	63.6	2.8e-18	minor head protein	head and packaging
NCBIFam	UHGV-1534339_16	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-1534339_17	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1534339_19	K10421	53.0	8.3e-16	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-1534339_19	phrog_13339	344.4	0	tail length tape measure protein	tail
UniRef90	UHGV-1534339_19	UniRef90_A0A395WD11	851.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1534339_19	999425.HMPREF9186_02045	244.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-1534339_19	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1534339_19	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1534339_19	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-1534339_20	phrog_3033	40.2	0.000000000031	N/A	unknown function
structural_annotation	UHGV-1534339_21	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1534339_22	phrog_88	140.3	9.80068e-42	major tail protein	tail
UniRef90	UHGV-1534339_22	UniRef90_A0A395WA58	327.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1534339_22	1111134.HMPREF1253_0377	142.0	6.33e-40	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1534339_22	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1534339_22	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-1534339_23	UniRef90_A0A374RUJ8	142.0	5.04005e-41	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1534339_23	86416.Clopa_0344	60.1	0.00000000116	N/A	N/A
structural_annotation	UHGV-1534339_23	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-1534339_24	UniRef90_C3DN78	51.2	0.00000576	Prophage pi2 protein 38	N/A
structural_annotation	UHGV-1534339_24	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-1534339_25	phrog_1951	74.3	1.2e-21	head-tail adaptor	connector
UniRef90	UHGV-1534339_25	UniRef90_A0A395WC07	224.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-1534339_25	588581.Cpap_1270	63.5	0.0000000000167	N/A	N/A
structural_annotation	UHGV-1534339_25	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1534339_26	phrog_5223	51.1	0.000000000000018	neck protein	connector
UniRef90	UHGV-1534339_26	UniRef90_A0A374RXD1	82.0	2.19e-18	DNA-packaging protein	N/A
structural_annotation	UHGV-1534339_26	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1534339_27	phrog_10	84.2	1.7e-24	major head protein	head and packaging
UniRef90	UHGV-1534339_27	UniRef90_A0A395WF70	809.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1534339_27	1536774.H70357_10630	159.0	2.53004e-41	Phage capsid family	N/A
Pfam	UHGV-1534339_27	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1534339_27	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1534339_27	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1534339_27	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1534339_28	K06904	88.2	1.1e-25	N/A	N/A
PHROG	UHGV-1534339_28	phrog_80	117.2	2e-34	head maturation protease	head and packaging
UniRef90	UHGV-1534339_28	UniRef90_A0A413UET6	355.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1534339_28	411470.RUMGNA_02064	175.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-1534339_28	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1534339_28	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1534339_28	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1534339_28	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1534339_29	phrog_12	106.8	1.6e-31	portal protein	head and packaging
UniRef90	UHGV-1534339_29	UniRef90_A0A395W9X2	828.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1534339_29	1203606.HMPREF1526_01337	290.0	0	Portal protein	N/A
Pfam	UHGV-1534339_29	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1534339_29	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1534339_29	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1534339_30	phrog_9	310.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1534339_30	UniRef90_A0A395WD03	1116.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1534339_30	742740.HMPREF9474_04307	545.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-1534339_30	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1534339_30	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1534339_30	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1534339_30	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1534339_31	phrog_361	82.2	5e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1534339_31	UniRef90_A0A7C6YMQ8	72.0	0.0000000000000923	P27 family phage terminase small subunit	N/A
Pfam	UHGV-1534339_31	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-1534339_31	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1534339_31	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1534339_32	phrog_119	59.0	7.8e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1534339_32	UniRef90_A0A395WA48	256.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1534339_32	1211814.CAPG01000074_gene3460	67.0	0.000000000000818	HNH endonuclease	N/A
Pfam	UHGV-1534339_32	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1534339_32	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1534339_33	PF13560,TIGR02612,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1534339_34	phrog_2059	104.1	1.6e-30	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1534339_34	UniRef90_A0A395WEU5	291.0	0	Antirestriction protein ArdA	N/A
eggNOG-mapper	UHGV-1534339_34	511680.BUTYVIB_00697	101.0	9.35e-23	N/A	N/A
Pfam	UHGV-1534339_34	PF07275	N/A	N/A	Antirestriction protein (ArdA)	ArdA
dbAPIS	UHGV-1534339_34	APIS003	N/A	N/A	DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes.	N/A
COG	UHGV-1534339_34	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
structural_annotation	UHGV-1534339_34	PF07275,COG4734	N/A	N/A	N/A	N/A
PHROG	UHGV-1534339_41	phrog_4525	66.0	6.7e-19	N/A	unknown function
PHROG	UHGV-1534339_42	phrog_2316	40.8	0.000000000037	N/A	unknown function
UniRef90	UHGV-1534339_42	UniRef90_A0A3E4YBW5	124.0	2.99e-35	N/A	N/A
eggNOG-mapper	UHGV-1534339_42	1280676.AUJO01000024_gene3262	65.5	0.00000000000106	N/A	N/A
structural_annotation	UHGV-1534339_42	PF16475,MF_00436,NF033216	N/A	N/A	N/A	N/A
PHROG	UHGV-1534339_43	phrog_478	105.9	2.4e-31	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1534339_43	UniRef90_A0A0J8Z1B9	178.0	0	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-1534339_43	272623.L62008	80.5	1.36e-17	N/A	N/A
UniRef90	UHGV-1534339_44	UniRef90_A0A413UEX6	296.0	0	N/A	N/A
Pfam	UHGV-1534339_44	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1534339_44	PF07374,NF008895	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1534339_48	PF01104,NF041014	N/A	N/A	N/A	N/A
PHROG	UHGV-1534339_49	phrog_22292	50.2	0.000000000000028	N/A	unknown function
structural_annotation	UHGV-1534339_50	PF01104,NF041014	N/A	N/A	N/A	N/A
UniRef90	UHGV-1534339_51	UniRef90_UPI000403EAB4	63.9	0.0000000000445	N/A	N/A
PHROG	UHGV-1534339_55	phrog_4601	40.9	0.000000000025	N/A	unknown function
structural_annotation	UHGV-1534339_55	PF17888	N/A	N/A	N/A	N/A
PHROG	UHGV-1534339_56	phrog_173	109.0	4.6e-32	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1534339_56	UniRef90_UPI001C25836D	236.0	0	dUTPase	N/A
eggNOG-mapper	UHGV-1534339_56	1174504.AJTN02000191_gene4276	72.4	0.000000000000117	dUTPase	N/A
Pfam	UHGV-1534339_56	PF08761	N/A	N/A	dUTPase	dUTPase_2
COG	UHGV-1534339_56	COG4508	N/A	N/A	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	N/A
structural_annotation	UHGV-1534339_56	PF08761,COG4508	N/A	N/A	N/A	N/A
KOfam	UHGV-1534339_59	K02315	105.3	7.8e-31	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1534339_59	phrog_50	91.9	9.2e-27	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1534339_59	UniRef90_A0A395WER8	322.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-1534339_59	1232446.BAIE02000011_gene1611	117.0	1.79e-30	N/A	N/A
Pfam	UHGV-1534339_59	PF00308	N/A	N/A	Bacterial dnaA protein	Bac_DnaA
COG	UHGV-1534339_59	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1534339_59	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1534339_61	phrog_428	144.3	9.40271e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1534339_61	UniRef90_A0A395WBX6	425.0	0	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1534339_61	279808.SH2379	150.0	2.09999e-41	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-1534339_61	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-1534339_61	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-1534339_61	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1534339_61	PF09524,PF08679,MF_01909,TIGR02220,NF040939,COG1675	N/A	N/A	N/A	N/A
KOfam	UHGV-1534339_64	K04763	136.8	2.2e-40	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1534339_64	phrog_1	119.1	4.6e-35	integrase	integration and excision
UniRef90	UHGV-1534339_64	UniRef90_A0A395W9T7	566.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1534339_64	908340.HMPREF9406_2589	228.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1534339_64	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1534339_64	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1534339_64	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1534339_67	UniRef90_UPI001D14AAA4	69.7	0.000000000000157	N/A	N/A
UniRef90	UHGV-1534339_69	UniRef90_UPI000E4DF961	63.5	0.00000000000317	ribbon-helix-helix domain-containing protein	N/A
Pfam	UHGV-1534339_69	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-1534339_69	PF01402,NF041793,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-1534339_71	K18830	65.2	1.3e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1534339_71	phrog_2967	50.1	0.000000000000049	transcriptional regulator	transcription regulation
UniRef90	UHGV-1534339_71	UniRef90_A0A413CSI3	263.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1534339_71	999413.HMPREF1094_02045	103.0	1.7e-26	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1534339_71	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1534339_71	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1534339_71	PF01381,NF041951,COG2944	N/A	N/A	N/A	N/A
KOfam	UHGV-1534339_72	K18841	104.9	4e-31	chpB, chpBK; mRNA interferase ChpB [EC:3.1.-.-]	N/A
PHROG	UHGV-1534339_72	phrog_1936	86.5	3.3e-25	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1534339_72	UniRef90_A0A6N7VH90	177.0	0	Type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-1534339_72	457405.FSDG_01637	126.0	1.82e-36	Toxic component of a toxin-antitoxin (TA) module	N/A
Pfam	UHGV-1534339_72	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-1534339_72	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-1534339_72	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
KOfam	UHGV-1534339_73	K07172	64.7	2.7e-18	mazE, chpAI; antitoxin MazE	N/A
PHROG	UHGV-1534339_73	phrog_4324	58.4	9.7e-17	N/A	unknown function
UniRef90	UHGV-1534339_73	UniRef90_A0A6N7V4Q9	124.0	1.62e-35	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1534339_73	1122173.AXVL01000008_gene1112	72.4	0.00000000000000101	PFAM SpoVT AbrB	N/A
Pfam	UHGV-1534339_73	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
COG	UHGV-1534339_73	COG2336	N/A	N/A	Antitoxin component MazE of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-1534339_73	PF04014,MF_01193,NF008463,COG2336	N/A	N/A	N/A	N/A
UniRef90	UHGV-1534339_75	UniRef90_A0A413CSC4	239.0	0	PBECR3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1534339_75	796940.HMPREF9628_02206	64.3	0.0000000000134	N/A	N/A
Pfam	UHGV-1534339_75	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
structural_annotation	UHGV-1534339_75	PF18812,COG2929	N/A	N/A	N/A	N/A
KOfam	UHGV-1534339_76	K14059	197.5	0	int; integrase	N/A
PHROG	UHGV-1534339_76	phrog_1	177.8	0	integrase	integration and excision
UniRef90	UHGV-1534339_76	UniRef90_A0A395WBW7	745.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1534339_76	1235796.C815_00955	300.0	0	DNA integration	N/A
Pfam	UHGV-1534339_76	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1534339_76	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1534339_76	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A