UHGV-1534639 (vOTU-059888)

Viral Genome: UHGV-1534639

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1534639
vOTU ID	vOTU-059888
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0267280
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.42 (High-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9688
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.71
Jumbo phage	No

Genome content
Genome length (bp)	35,400
GC content	56.85%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	94%
Average CDS length (bps)	654.88
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 96.42)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1534639_1	K02469	608.8	0	gyrA; DNA gyrase subunit A [EC:5.6.2.2]	N/A
PHROG	UHGV-1534639_1	phrog_28877	674.3	0	DNA topoisomerase II	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1534639_1	UniRef90_D1PMH4	1240.0	0	DNA topoisomerase (ATP-hydrolyzing)	N/A
eggNOG-mapper	UHGV-1534639_1	411471.SUBVAR_05534	1240.0	0	PFAM DNA gyrase topoisomerase IV, subunit A	N/A
Pfam	UHGV-1534639_1	PF00521	N/A	N/A	DNA gyrase/topoisomerase IV, subunit A	DNA_topoisoIV
COG	UHGV-1534639_1	COG0188	N/A	N/A	DNA gyrase/topoisomerase IV, subunit A	N/A
structural_annotation	UHGV-1534639_1	PF00521,MF_01897,NF004043,COG0188	N/A	N/A	N/A	N/A
PHROG	UHGV-1534639_2	phrog_199	64.5	1.2e-18	holin	lysis
UniRef90	UHGV-1534639_2	UniRef90_A0A6N8H4I3	289.0	0	Holin	N/A
eggNOG-mapper	UHGV-1534639_2	411471.SUBVAR_05868	197.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-1534639_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1534639_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1534639_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1534639_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1534639_3	K19304	127.6	1.2e-37	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-1534639_3	phrog_6700	82.0	2.2e-24	endolysin	lysis
UniRef90	UHGV-1534639_3	UniRef90_A0A6N8H6M3	506.0	0	M23 family metallopeptidase	N/A
eggNOG-mapper	UHGV-1534639_3	314225.ELI_12330	94.4	1.83e-20	COG0739 Membrane proteins related to metalloendopeptidases	N/A
Pfam	UHGV-1534639_3	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-1534639_3	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
PHROG	UHGV-1534639_4	phrog_38190	75.9	4.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-1534639_4	665956.HMPREF1032_02936	113.0	1.94e-28	N/A	N/A
eggNOG-mapper	UHGV-1534639_6	1235793.C809_02474	68.9	0.0000000000111	nuclear chromosome segregation	N/A
COG	UHGV-1534639_6	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
eggNOG-mapper	UHGV-1534639_7	742733.HMPREF9469_05009	57.8	0.0000000075	N/A	N/A
PHROG	UHGV-1534639_8	phrog_13589	187.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1534639_8	428125.CLOLEP_01434	236.0	0	N/A	N/A
PHROG	UHGV-1534639_9	phrog_31538	44.8	0.0000000000024	N/A	unknown function
PHROG	UHGV-1534639_10	phrog_15594	78.7	5.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-1534639_10	1118055.CAGU01000013_gene763	57.8	0.00000000142	N/A	N/A
structural_annotation	UHGV-1534639_10	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-1534639_14	phrog_18725	43.4	0.0000000000055	N/A	unknown function
eggNOG-mapper	UHGV-1534639_14	1120746.CCNL01000014_gene2212	115.0	3.79e-31	N/A	N/A
PHROG	UHGV-1534639_15	phrog_13879	287.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1534639_15	1120746.CCNL01000014_gene2107	330.0	0	N/A	N/A
structural_annotation	UHGV-1534639_15	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1534639_16	phrog_1194	66.9	2.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-1534639_16	1120746.CCNL01000014_gene2106	166.0	0	N/A	N/A
structural_annotation	UHGV-1534639_16	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1534639_17	phrog_1535	115.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1534639_17	411471.SUBVAR_06934	118.0	6.62e-25	tape measure	N/A
COG	UHGV-1534639_17	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-1534639_18	phrog_706	103.0	2.7e-30	N/A	unknown function
UniRef90	UHGV-1534639_18	UniRef90_UPI0013141117	229.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1534639_18	665956.HMPREF1032_03058	238.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1534639_18	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1534639_18	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1534639_19	phrog_11299	86.9	2.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-1534639_19	665956.HMPREF1032_03059	115.0	4.22e-31	N/A	N/A
structural_annotation	UHGV-1534639_19	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1534639_20	phrog_3099	156.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1534639_20	411471.SUBVAR_06936	266.0	0	N/A	N/A
structural_annotation	UHGV-1534639_20	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1534639_21	phrog_3266	70.6	2.1e-20	tail completion	connector
eggNOG-mapper	UHGV-1534639_21	665956.HMPREF1032_02946	50.4	0.00000701	N/A	N/A
structural_annotation	UHGV-1534639_21	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1534639_22	phrog_556	93.6	1.4e-27	minor head protein	head and packaging
UniRef90	UHGV-1534639_22	UniRef90_UPI001958E7C1	139.0	9.22e-40	minor capsid protein	N/A
eggNOG-mapper	UHGV-1534639_22	665956.HMPREF1032_03062	108.0	1.75e-28	Minor capsid protein	N/A
Pfam	UHGV-1534639_22	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1534639_22	PF11114	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1534639_23	411471.SUBVAR_06991	59.3	0.000000000621	N/A	N/A
Pfam	UHGV-1534639_23	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1534639_23	PF20536,COG1853	N/A	N/A	N/A	N/A
PHROG	UHGV-1534639_24	phrog_541	57.1	3.3e-16	head-tail adaptor	connector
eggNOG-mapper	UHGV-1534639_25	33035.JPJF01000030_gene2294	248.0	0	N/A	N/A
structural_annotation	UHGV-1534639_25	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1534639_26	phrog_194	66.1	3.1e-19	head scaffolding protein	head and packaging
UniRef90	UHGV-1534639_26	UniRef90_R5GVJ3	83.6	1.29e-16	Bacteriophage SPP1 complete nucleotide sequence	N/A
eggNOG-mapper	UHGV-1534639_26	663278.Ethha_0497	62.4	0.00000000175	N/A	N/A
Pfam	UHGV-1534639_26	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-1534639_28	phrog_581	340.5	0	minor head protein	head and packaging
UniRef90	UHGV-1534639_28	UniRef90_A0A3D0M4T9	370.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1534639_28	645991.Sgly_0338	370.0	0	N/A	N/A
Pfam	UHGV-1534639_28	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-1534639_28	PF15644	N/A	N/A	Papain fold toxin 1, glutamine deamidase	Gln_amidase
COG	UHGV-1534639_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1534639_28	PF06152,PF15542	N/A	N/A	N/A	N/A
PHROG	UHGV-1534639_29	phrog_533	303.5	0	portal protein	head and packaging
UniRef90	UHGV-1534639_29	UniRef90_A0A173Y8E3	463.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1534639_29	411490.ANACAC_00782	184.0	0	N/A	N/A
structural_annotation	UHGV-1534639_29	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1534639_30	K06909	119.4	4e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1534639_30	phrog_2	117.1	2.4e-34	terminase large subunit	head and packaging
UniRef90	UHGV-1534639_30	UniRef90_A0A3D3FC70	364.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1534639_30	742723.HMPREF9477_00911	240.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1534639_30	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1534639_30	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1534639_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1534639_30	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
Pfam	UHGV-1534639_31	PF05225	N/A	N/A	helix-turn-helix, Psq domain	HTH_psq
PHROG	UHGV-1534639_32	phrog_1233	80.2	2.7e-23	N/A	unknown function
eggNOG-mapper	UHGV-1534639_32	1232443.BAIA02000078_gene33	105.0	7.42e-28	N/A	N/A
KOfam	UHGV-1534639_36	K01160	71.0	2.5e-20	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1534639_36	phrog_34	67.7	1.7e-19	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1534639_36	UniRef90_A0A1M6MZ11	108.0	4.76e-28	Holliday junction resolvase RusA (Prophage-encoded endonuclease)	N/A
eggNOG-mapper	UHGV-1534639_36	1449126.JQKL01000003_gene1702	56.6	0.0000000204	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1534639_36	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1534639_36	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1534639_37	phrog_24484	105.8	3.3e-31	N/A	unknown function
KOfam	UHGV-1534639_38	K00571	86.4	2e-25	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1534639_38	phrog_16	212.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1534639_38	UniRef90_UPI001CC0DA2C	1552.0	0	DNA methylase N-4	N/A
eggNOG-mapper	UHGV-1534639_38	936573.HMPREF1147_1705	1175.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-1534639_38	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1534639_38	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1534639_38	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1534639_39	phrog_9804	45.4	0.0000000000012	N/A	unknown function
Pfam	UHGV-1534639_39	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1534639_39	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1534639_40	phrog_15768	87.5	1.6e-35	N/A	unknown function
UniRef90	UHGV-1534639_40	UniRef90_UPI001959E913	185.0	0	N/A	N/A
eggNOG-mapper	UHGV-1534639_40	693979.Bache_0304	96.7	2.31e-22	N/A	N/A
Pfam	UHGV-1534639_40	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1534639_40	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-1534639_41	phrog_2760	207.9	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1534639_41	UniRef90_UPI00156DE752	251.0	0	phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-1534639_41	1031288.AXAA01000044_gene1973	204.0	0	Phage recombination protein Bet	N/A
Pfam	UHGV-1534639_41	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1534639_41	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-1534639_41	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1534639_41	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1534639_42	phrog_674	150.0	1.26117e-44	N/A	unknown function
UniRef90	UHGV-1534639_42	UniRef90_UPI001C02A855	162.0	2.10195e-44	N/A	N/A
eggNOG-mapper	UHGV-1534639_42	742740.HMPREF9474_03487	107.0	1.29e-24	N/A	N/A
Pfam	UHGV-1534639_42	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1534639_42	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1534639_43	phrog_434	133.6	1.7e-39	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1534639_43	UniRef90_UPI001898139F	257.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-1534639_43	1121441.AUCX01000014_gene536	208.0	0	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-1534639_43	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1534639_43	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1534639_43	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1534639_43	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-1534639_48	K23779	42.6	0.000000000013	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-1534639_48	phrog_6499	44.6	0.0000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-1534639_48	UniRef90_A0A6N2UL50	96.7	8.77e-25	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-1534639_48	1504823.CCMM01000008_gene1079	66.2	0.00000000000011	sequence-specific DNA binding	N/A
Pfam	UHGV-1534639_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1534639_48	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1534639_48	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1534639_49	K22300	62.1	1.1e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1534639_49	phrog_2967	64.2	1.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1534639_49	UniRef90_A0A412UNH6	80.1	5.32e-17	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1534639_49	1141106.CAIB01000114_gene881	74.3	0.00000000000000103	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1534639_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1534639_49	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1534639_49	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1534639_50	phrog_87	45.1	0.0000000000012	metallo-protease	other
UniRef90	UHGV-1534639_50	UniRef90_UPI001C3AA0FC	129.0	9.89e-36	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1534639_50	663278.Ethha_2376	93.6	1.56e-22	N/A	N/A
structural_annotation	UHGV-1534639_50	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1534639_51	phrog_9605	387.4	0	N/A	unknown function
UniRef90	UHGV-1534639_51	UniRef90_UPI0014593EBE	407.0	0	N/A	N/A
eggNOG-mapper	UHGV-1534639_51	641107.CDLVIII_4198	364.0	0	N/A	N/A
Pfam	UHGV-1534639_51	PF12358	N/A	N/A	N/A	DUF3644
Pfam	UHGV-1534639_51	PF18740	N/A	N/A	EC042_2821-like Restriction Endonuclease-like domain	EC042_2821