UHGV-1535604 (vOTU-068797)

Viral Genome: UHGV-1535604

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1535604
vOTU ID	vOTU-068797
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0266899
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9759
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.81
Jumbo phage	No

Genome content
Genome length (bp)	37,199
GC content	56.85%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	94%
Average CDS length (bps)	557.43
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1535604_5	phrog_674	87.9	1.3e-25	N/A	unknown function
UniRef90	UHGV-1535604_5	UniRef90_UPI0009306B6F	316.0	0	N/A	N/A
eggNOG-mapper	UHGV-1535604_5	479437.Elen_2601	259.0	0	N/A	N/A
Pfam	UHGV-1535604_5	PF07083	N/A	N/A	N/A	DUF1351
PHROG	UHGV-1535604_6	phrog_155	110.7	1.4e-32	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1535604_6	UniRef90_UPI00093167A9	203.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1535604_6	1118057.CAGX01000020_gene1653	115.0	2.47e-29	ERF superfamily	N/A
Pfam	UHGV-1535604_6	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1535604_6	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1535604_7	phrog_72	65.7	7.6e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1535604_7	411470.RUMGNA_02194	72.0	0.000000000000148	N/A	N/A
structural_annotation	UHGV-1535604_7	PF05772	N/A	N/A	N/A	N/A
KOfam	UHGV-1535604_8	K03111	135.5	5.8e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1535604_8	phrog_44	120.2	1.1e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1535604_8	UniRef90_A0A3A9BCL5	171.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1535604_8	502558.EGYY_00970	162.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1535604_8	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1535604_8	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1535604_8	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1535604_8	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1535604_8	PF00436,MF_00984,NF006297,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1535604_9	K21919	45.0	0.000000000001	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-1535604_9	phrog_9562	99.5	1.2e-29	N/A	unknown function
UniRef90	UHGV-1535604_9	UniRef90_UPI001F3391DF	135.0	1.31e-37	N/A	N/A
eggNOG-mapper	UHGV-1535604_9	1226322.HMPREF1545_00011	117.0	1.63e-30	Pentapeptide repeats (8 copies)	N/A
Pfam	UHGV-1535604_9	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
Pfam	UHGV-1535604_9	PF19062	N/A	N/A	N/A	DUF5758
COG	UHGV-1535604_9	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1535604_9	PF19062,PF13599,NF000139	N/A	N/A	N/A	N/A
PHROG	UHGV-1535604_10	phrog_428	130.9	1.2e-38	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1535604_10	UniRef90_UPI0013EAC480	115.0	5.79e-28	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1535604_10	1295642.H839_08149	103.0	1.4e-23	Replication initiation and membrane attachment	N/A
Pfam	UHGV-1535604_10	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-1535604_10	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-1535604_10	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1535604_10	PF09524,PF19808,TIGR02220	N/A	N/A	N/A	N/A
KOfam	UHGV-1535604_11	K02315	170.2	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1535604_11	phrog_50	154.6	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1535604_11	UniRef90_UPI0009315887	197.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1535604_11	1125712.HMPREF1316_1537	154.0	1.69557e-43	IstB-like ATP binding protein	N/A
Pfam	UHGV-1535604_11	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1535604_11	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1535604_11	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1535604_13	phrog_843	70.9	1.4e-20	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1535604_13	UniRef90_A0A3N0AG95	230.0	0	Holliday junction resolvase RecU	N/A
Pfam	UHGV-1535604_13	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-1535604_13	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
UniRef90	UHGV-1535604_14	UniRef90_A0A437UTS5	124.0	1.36e-33	N/A	N/A
Pfam	UHGV-1535604_14	PF07374	N/A	N/A	N/A	DUF1492
PHROG	UHGV-1535604_19	phrog_14517	56.6	3.7e-16	N/A	unknown function
PHROG	UHGV-1535604_21	phrog_19458	140.7	0	primase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1535604_21	411459.RUMOBE_01108	192.0	0	N/A	N/A
COG	UHGV-1535604_21	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
KOfam	UHGV-1535604_22	K02338	44.7	4.9e-18	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	N/A
PHROG	UHGV-1535604_22	phrog_3007	60.5	3e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1535604_22	222534.KB893683_gene1155	57.4	0.000000532	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	N/A
COG	UHGV-1535604_22	COG0592	N/A	N/A	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	N/A
PHROG	UHGV-1535604_24	phrog_421	100.1	2.4e-29	N/A	unknown function
UniRef90	UHGV-1535604_24	UniRef90_UPI00189FBB65	204.0	0	N/A	N/A
eggNOG-mapper	UHGV-1535604_24	742722.HMPREF9463_00227	185.0	0	N/A	N/A
Pfam	UHGV-1535604_24	PF10979	N/A	N/A	N/A	DUF2786
structural_annotation	UHGV-1535604_24	PF10979	N/A	N/A	N/A	N/A
UniRef90	UHGV-1535604_25	UniRef90_UPI001D10AECC	101.0	7.69e-26	N/A	N/A
eggNOG-mapper	UHGV-1535604_25	1499685.CCFJ01000055_gene1946	89.7	5.34e-22	DNA restriction-modification system	N/A
Pfam	UHGV-1535604_25	PF11171	N/A	N/A	N/A	DUF2958
COG	UHGV-1535604_25	COG0827	N/A	N/A	Adenine-specific DNA N6-methylase	N/A
structural_annotation	UHGV-1535604_25	PF11171	N/A	N/A	N/A	N/A
PHROG	UHGV-1535604_26	phrog_2339	46.1	0.00000000000061	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1535604_26	UniRef90_F7UWI7	74.7	6.86e-16	Plasmid maintenance system antidote protein	N/A
Pfam	UHGV-1535604_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-1535604_29	phrog_2302	127.2	9.6e-38	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1535604_29	UniRef90_A0A318MLB0	302.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-1535604_29	742722.HMPREF9463_00233	250.0	0	sulfate reduction	N/A
COG	UHGV-1535604_29	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1535604_29	PF01507,MF_00063,TIGR02057,COG0175	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1535604_32	566461.SSFG_01019	58.9	0.00000000044	N/A	N/A
PHROG	UHGV-1535604_34	phrog_2412	51.2	0.000000000000019	N/A	unknown function
eggNOG-mapper	UHGV-1535604_34	1125712.HMPREF1316_1524	56.2	0.0000000318	N/A	N/A
PHROG	UHGV-1535604_35	phrog_38	155.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1535604_35	UniRef90_UPI00166CA12B	431.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1535604_35	742722.HMPREF9463_00238	640.0	0	N/A	N/A
structural_annotation	UHGV-1535604_35	PF17289,PF05876,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-1535604_36	phrog_64	365.0	0	portal protein	head and packaging
UniRef90	UHGV-1535604_36	UniRef90_A0A437UTT5	671.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1535604_36	742722.HMPREF9463_00239	563.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-1535604_36	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1535604_36	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1535604_36	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
UniRef90	UHGV-1535604_37	UniRef90_UPI000931FACD	89.7	4.66e-20	Rho termination factor N-terminal domain-containing protein	N/A
Pfam	UHGV-1535604_37	PF07498	N/A	N/A	Rho termination factor, N-terminal domain	Rho_N
PHROG	UHGV-1535604_38	phrog_115	208.8	0	minor head protein	head and packaging
UniRef90	UHGV-1535604_38	UniRef90_UPI0009F96B95	446.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1535604_38	742722.HMPREF9463_00241	410.0	0	domain, Protein	N/A
Pfam	UHGV-1535604_38	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1535604_38	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1535604_38	COG2369	N/A	N/A	N/A	N/A
UniRef90	UHGV-1535604_40	UniRef90_UPI0009316548	94.0	5.2e-23	thioredoxin family protein	N/A
PHROG	UHGV-1535604_42	phrog_172	92.1	8.9e-27	head scaffolding protein	head and packaging
UniRef90	UHGV-1535604_42	UniRef90_UPI000930CB63	167.0	0	N/A	N/A
eggNOG-mapper	UHGV-1535604_42	742722.HMPREF9463_00244	115.0	3.55e-29	N/A	N/A
Pfam	UHGV-1535604_42	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1535604_42	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1535604_43	phrog_909	46.9	0.00000000000043	major head protein	head and packaging
eggNOG-mapper	UHGV-1535604_43	1497679.EP56_02915	50.4	0.0000015	N/A	N/A
structural_annotation	UHGV-1535604_43	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-1535604_44	phrog_29	192.5	0	major head protein	head and packaging
UniRef90	UHGV-1535604_44	UniRef90_UPI000931CAC7	456.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-1535604_44	742722.HMPREF9463_00246	433.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1535604_44	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1535604_44	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1535604_45	UniRef90_X8HX34	77.8	3.14e-16	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1535604_45	742722.HMPREF9463_00247	125.0	8.1e-36	N/A	N/A
structural_annotation	UHGV-1535604_45	PF05135	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1535604_46	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1535604_47	phrog_5	57.1	4.7e-16	tail completion or Neck1 protein	connector
UniRef90	UHGV-1535604_47	UniRef90_A0A437UU44	182.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1535604_47	742722.HMPREF9463_00249	150.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-1535604_47	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1535604_48	phrog_176	43.3	0.000000000006	tail terminator	connector
UniRef90	UHGV-1535604_48	UniRef90_A0A437UU11	197.0	0	N/A	N/A
eggNOG-mapper	UHGV-1535604_48	1235792.C808_05344	133.0	2.33e-38	N/A	N/A
Pfam	UHGV-1535604_48	PF16807	N/A	N/A	N/A	DUF5072
structural_annotation	UHGV-1535604_48	PF16807,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1535604_49	phrog_1407	99.0	3.2e-29	major tail protein	tail
UniRef90	UHGV-1535604_49	UniRef90_A0A437UTX5	247.0	0	Phage major tail protein, TP901-1 family	N/A
eggNOG-mapper	UHGV-1535604_49	742722.HMPREF9463_00251	237.0	0	Phage tail tube protein	N/A
Pfam	UHGV-1535604_49	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
NCBIFam	UHGV-1535604_49	TIGR02126.1	N/A	N/A	phage major tail protein, TP901-1 family	N/A
COG	UHGV-1535604_49	COG5437	N/A	N/A	Phage tail protein, TP901-1 family	N/A
structural_annotation	UHGV-1535604_49	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1535604_50	1235792.C808_05346	81.3	3.43e-18	N/A	N/A
PHROG	UHGV-1535604_51	phrog_7423	67.3	1.6e-19	N/A	unknown function
UniRef90	UHGV-1535604_51	UniRef90_UPI0008A1BA71	69.3	0.000000000000467	phenylalanine racemase	N/A
eggNOG-mapper	UHGV-1535604_51	1140002.I570_02921	50.8	0.00000113	N/A	N/A
PHROG	UHGV-1535604_52	phrog_58	296.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1535604_52	742722.HMPREF9463_00254	289.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-1535604_52	PF20155	N/A	N/A	Tape measure protein	TMP_3
Pfam	UHGV-1535604_52	PF04513	N/A	N/A	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
NCBIFam	UHGV-1535604_52	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1535604_52	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1535604_52	PF20155,MF_04138,TIGR01760,COG3941	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1535604_53	665950.HMPREF1025_02521	79.7	0.00000000000000818	N/A	N/A
structural_annotation	UHGV-1535604_53	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1535604_54	phrog_538	149.9	1.54143e-44	minor tail protein	tail
UniRef90	UHGV-1535604_54	UniRef90_UPI001C2424C5	207.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-1535604_54	1256908.HMPREF0373_00466	216.0	0	N/A	N/A
Pfam	UHGV-1535604_54	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-1535604_54	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1535604_55	1121866.AUGK01000006_gene893	72.4	0.00000000000685	N/A	N/A
UniRef90	UHGV-1535604_56	UniRef90_R9L5R1	331.0	0	N/A	N/A
eggNOG-mapper	UHGV-1535604_56	1235794.C811_01515	331.0	0	N/A	N/A
Pfam	UHGV-1535604_56	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1535604_56	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1535604_57	1235794.C811_01514	179.0	0	N/A	N/A
structural_annotation	UHGV-1535604_57	PF05635,TIGR02436	N/A	N/A	N/A	N/A
KOfam	UHGV-1535604_58	K00986	99.6	3.8e-29	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-1535604_58	phrog_1423	175.1	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1535604_58	UniRef90_R9KXH5	453.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-1535604_58	1235794.C811_01513	453.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-1535604_58	icity0040	74.8	1.9e-21	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-1535604_58	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-1535604_58	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-1535604_58	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1535604_59	1235794.C811_01512	90.5	2.42e-22	N/A	N/A
PHROG	UHGV-1535604_60	phrog_134	54.8	0.0000000000000012	N/A	unknown function
UniRef90	UHGV-1535604_60	UniRef90_UPI0007BB27C3	62.0	0.00000000001	XkdX family protein	N/A
eggNOG-mapper	UHGV-1535604_60	697281.Mahau_0596	52.0	0.0000000135	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-1535604_60	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-1535604_60	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
structural_annotation	UHGV-1535604_60	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-1535604_61	phrog_4105	48.2	0.00000000000011	N/A	unknown function
eggNOG-mapper	UHGV-1535604_61	35760.BCHO_0822	55.5	0.0000000592	N/A	N/A
PHROG	UHGV-1535604_62	phrog_1454	103.9	7e-31	N/A	unknown function
UniRef90	UHGV-1535604_62	UniRef90_A0A0D0R2H3	107.0	2.1e-29	Phosphomannomutase	N/A
eggNOG-mapper	UHGV-1535604_62	1232453.BAIF02000027_gene4203	110.0	3.36e-31	N/A	N/A